Wall clock time and date at job start Tue Mar 31 2020 18:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47115 * 2 1 4 4 N 1.30449 * 125.98917 * 269.95868 * 3 2 1 5 5 N 1.39932 * 108.89878 * 180.02562 * 4 3 2 6 6 C 1.46503 * 125.75331 * 179.97438 * 5 4 3 7 7 C 1.34256 * 108.49138 * 359.75439 * 5 4 3 8 8 C 1.38044 * 107.41837 * 0.39008 * 7 5 4 9 9 C 1.47424 * 126.41657 * 179.87500 * 8 7 5 10 10 O 1.21609 * 120.00411 * 179.68642 * 9 8 7 11 11 N 1.34777 * 120.00049 * 359.68972 * 9 8 7 12 12 C 1.46500 * 120.00096 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.47214 * 324.99517 * 12 11 9 14 14 C 1.52998 * 109.47160 * 85.00384 * 12 11 9 15 15 C 1.53000 * 109.47058 * 204.99851 * 12 11 9 16 16 C 1.53040 * 109.46183 * 300.03023 * 15 12 11 17 17 C 1.53199 * 109.31348 * 178.60230 * 16 15 12 18 18 N 1.46925 * 108.76374 * 54.65593 * 17 16 15 19 19 C 1.36934 * 120.63329 * 126.40956 * 18 17 16 20 20 H 1.08005 * 119.99824 * 331.82239 * 19 18 17 21 21 C 1.38809 * 120.00436 * 151.82130 * 19 18 17 22 22 N 1.31625 * 119.99727 * 343.06826 * 21 19 18 23 23 Si 1.86799 * 120.00154 * 163.07497 * 21 19 18 24 24 H 1.48494 * 109.47384 * 90.00085 * 23 21 19 25 25 H 1.48501 * 109.46863 * 210.00032 * 23 21 19 26 26 H 1.48503 * 109.46861 * 329.99574 * 23 21 19 27 27 C 1.46926 * 118.73891 * 306.37914 * 18 17 16 28 28 C 1.53044 * 109.46083 * 179.97438 * 15 12 11 29 29 H 1.09005 * 109.47149 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46791 * 299.99687 * 1 2 3 31 31 H 1.08994 * 109.47111 * 60.00137 * 1 2 3 32 32 H 1.08998 * 109.47039 * 239.99619 * 2 1 3 33 33 H 1.09008 * 109.47010 * 119.99916 * 2 1 3 34 34 H 1.09003 * 109.46818 * 89.97803 * 6 5 4 35 35 H 1.08995 * 109.47276 * 209.97835 * 6 5 4 36 36 H 1.09004 * 109.47035 * 329.98153 * 6 5 4 37 37 H 1.08008 * 126.29159 * 180.24557 * 7 5 4 38 38 H 0.97000 * 120.00017 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47200 * 179.97438 * 14 12 11 40 40 H 1.09005 * 109.46903 * 299.99406 * 14 12 11 41 41 H 1.08993 * 109.47766 * 59.99471 * 14 12 11 42 42 H 1.09007 * 109.46041 * 60.00025 * 15 12 11 43 43 H 1.09004 * 109.49299 * 298.56521 * 16 15 12 44 44 H 1.09000 * 109.49916 * 58.66213 * 16 15 12 45 45 H 1.08995 * 109.59419 * 294.86158 * 17 16 15 46 46 H 1.09002 * 109.70019 * 174.50243 * 17 16 15 47 47 H 0.97000 * 119.99696 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.58890 * 293.83234 * 27 18 17 49 49 H 1.08994 * 109.70628 * 173.47235 * 27 18 17 50 50 H 1.08997 * 109.49565 * 301.33382 * 28 15 12 51 51 H 1.08992 * 109.49842 * 61.43546 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2886 2.1432 -1.0555 5 7 2.7347 3.4042 -0.6443 6 6 3.1252 4.5046 -1.5291 7 6 2.7400 3.4372 0.6979 8 6 2.3090 2.2037 1.1432 9 6 2.1592 1.7839 2.5485 10 8 1.7623 0.6645 2.8098 11 7 2.4621 2.6408 3.5437 12 6 2.3127 2.2239 4.9402 13 1 1.4522 1.5613 5.0314 14 6 3.5751 1.4855 5.3897 15 6 2.1025 3.4571 5.8209 16 6 3.3105 4.3878 5.6920 17 6 3.0810 5.6375 6.5478 18 7 2.7859 5.2195 7.9251 19 6 3.5078 5.7194 8.9758 20 1 4.5301 6.0346 8.8273 21 6 2.9258 5.8210 10.2319 22 7 1.6169 5.7619 10.3575 23 14 4.0001 6.0420 11.7440 24 1 4.2076 7.4905 11.9965 25 1 3.3337 5.4252 12.9191 26 1 5.3130 5.3856 11.5186 27 6 1.7010 4.2554 8.1536 28 6 1.9458 3.0213 7.2796 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8901 34 1 2.2532 5.1203 -1.7498 35 1 3.8849 5.1131 -1.0387 36 1 3.5279 4.0990 -2.4573 37 1 3.0304 4.2741 1.3157 38 1 2.7783 3.5338 3.3353 39 1 3.4642 1.1757 6.4289 40 1 3.7249 0.6068 4.7623 41 1 4.4357 2.1481 5.2984 42 1 1.2031 3.9831 5.5005 43 1 4.2064 3.8706 6.0358 44 1 3.4357 4.6792 4.6491 45 1 2.2392 6.2038 6.1494 46 1 3.9766 6.2588 6.5385 47 1 1.2102 5.8325 11.2353 48 1 0.7466 4.7090 7.8861 49 1 1.6848 3.9623 9.2033 50 1 1.0995 2.3400 7.3668 51 1 2.8546 2.5173 7.6082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997628788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:24 Heat of formation + Delta-G solvation = 24.585766 kcal Electronic energy + Delta-G solvation = -29499.643890 eV Core-core repulsion = 25627.808031 eV Total energy + Delta-G solvation = -3871.835859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.43892 -40.69294 -39.23937 -36.76483 -35.59731 -34.43621 -33.11219 -32.50569 -31.58675 -31.12354 -30.00576 -27.77143 -27.09943 -25.32823 -24.51795 -23.90299 -23.26243 -22.19850 -21.14067 -20.60397 -20.03055 -18.79856 -18.40727 -17.12692 -16.93626 -16.67452 -16.46928 -15.84474 -15.62824 -15.55663 -15.42755 -15.31316 -15.09923 -14.88594 -14.63306 -14.09324 -14.04459 -14.00999 -13.72889 -13.58761 -13.44216 -12.99637 -12.93636 -12.87669 -12.83910 -12.58392 -12.43406 -12.40888 -12.11535 -12.08760 -11.93082 -11.74442 -11.59852 -11.55043 -11.13977 -10.91009 -10.73311 -10.48627 -10.37737 -10.05069 -9.57864 -8.62532 -7.83947 -5.28575 0.55414 1.12216 1.47365 1.47811 1.49756 1.58686 2.33250 2.51372 2.53847 3.30851 3.37388 3.70805 3.74661 3.86297 3.94546 4.03068 4.11627 4.23165 4.28376 4.41568 4.44910 4.46229 4.47886 4.49963 4.63663 4.66486 4.68789 4.72189 4.73927 4.79092 4.86823 4.98761 5.03393 5.04427 5.10574 5.18011 5.22878 5.29578 5.30003 5.33622 5.38571 5.48838 5.51345 5.62300 5.64564 5.71421 5.85548 5.92116 6.43370 6.53981 6.75386 7.19252 7.40870 7.92362 8.43153 9.22136 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.002421 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.022534 B =11561.333989 C =12341.451741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.047 4.047 3 C 0.120 3.880 4 N -0.329 5.329 5 N -0.359 5.359 6 C 0.086 3.914 7 C 0.120 3.880 8 C -0.318 4.318 9 C 0.593 3.407 10 O -0.579 6.579 11 N -0.710 5.710 12 C 0.161 3.839 13 H 0.069 0.931 14 C -0.156 4.156 15 C -0.074 4.074 16 C -0.115 4.115 17 C 0.140 3.860 18 N -0.610 5.610 19 C -0.258 4.258 20 H 0.067 0.933 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.963 3.037 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.270 1.270 27 C 0.178 3.822 28 C -0.122 4.122 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.095 0.905 37 H 0.225 0.775 38 H 0.408 0.592 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.013 0.987 46 H 0.055 0.945 47 H 0.248 0.752 48 H -0.008 1.008 49 H 0.050 0.950 50 H 0.060 0.940 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 -4.260 -24.481 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.087 4.087 3 C -0.047 4.047 4 N -0.151 5.151 5 N -0.136 5.136 6 C -0.053 4.053 7 C -0.033 4.033 8 C -0.333 4.333 9 C 0.382 3.618 10 O -0.460 6.460 11 N -0.362 5.362 12 C 0.056 3.944 13 H 0.087 0.913 14 C -0.214 4.214 15 C -0.093 4.093 16 C -0.154 4.154 17 C 0.014 3.986 18 N -0.334 5.334 19 C -0.388 4.388 20 H 0.085 0.915 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.791 3.209 24 H -0.212 1.212 25 H -0.222 1.222 26 H -0.195 1.195 27 C 0.053 3.947 28 C -0.162 4.162 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.113 0.887 37 H 0.241 0.759 38 H 0.245 0.755 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.031 0.969 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.010 0.990 49 H 0.068 0.932 50 H 0.079 0.921 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.324 -4.830 -25.572 26.236 hybrid contribution 0.186 0.719 2.058 2.188 sum 3.510 -4.111 -23.514 24.127 Atomic orbital electron populations 1.21544 0.93595 1.02690 1.01032 1.20081 0.96845 0.88088 1.03637 1.22627 0.95502 0.97353 0.89246 1.77117 1.23035 0.91931 1.22972 1.48699 1.47930 1.11395 1.05526 1.22422 1.03029 0.85227 0.94654 1.23660 0.95542 0.98605 0.85516 1.20288 1.22295 0.97030 0.93650 1.17471 0.75966 0.84201 0.84205 1.90710 1.48802 1.21701 1.84804 1.45846 1.67938 1.17181 1.05217 1.20764 0.98370 0.95481 0.79745 0.91321 1.22160 0.97872 1.00056 1.01307 1.21157 0.99003 0.94932 0.94189 1.21978 0.97509 0.96186 0.99691 1.21085 0.97842 0.95008 0.84622 1.44311 1.38996 1.48060 1.02016 1.19505 0.93906 1.36420 0.88970 0.91512 1.25772 0.96294 1.01340 1.01415 1.70188 1.09723 1.55742 1.22644 0.85345 0.78569 0.77551 0.79407 1.21202 1.22186 1.19505 1.20539 0.88389 0.87928 0.97893 1.22054 1.01142 0.98043 0.94952 0.90528 0.94083 0.92753 0.89750 0.89694 0.88908 0.85781 0.88664 0.75896 0.75467 0.91696 0.93423 0.91389 0.91673 0.91852 0.89519 0.96908 0.92686 0.94277 0.98999 0.93195 0.92120 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.90 71.98 0.71 -1.99 16 2 C -0.05 -1.06 5.97 29.85 0.18 -0.88 16 3 C 0.12 2.88 6.52 43.51 0.28 3.16 16 4 N -0.33 -7.39 12.50 -46.68 -0.58 -7.97 16 5 N -0.36 -5.44 3.98 -367.77 -1.46 -6.90 16 6 C 0.09 0.44 11.44 127.77 1.46 1.90 16 7 C 0.12 1.72 10.99 84.28 0.93 2.65 16 8 C -0.32 -7.10 6.13 -20.15 -0.12 -7.23 16 9 C 0.59 15.47 7.78 86.66 0.67 16.15 16 10 O -0.58 -19.16 14.58 -4.06 -0.06 -19.22 16 11 N -0.71 -15.52 4.99 -445.81 -2.22 -17.75 16 12 C 0.16 4.20 2.40 44.99 0.11 4.31 16 13 H 0.07 2.06 7.58 -2.39 -0.02 2.04 16 14 C -0.16 -4.00 8.78 71.98 0.63 -3.37 16 15 C -0.07 -2.13 2.14 -10.77 -0.02 -2.16 16 16 C -0.11 -3.17 4.81 30.67 0.15 -3.03 16 17 C 0.14 5.23 6.52 86.36 0.56 5.80 16 18 N -0.61 -29.49 2.99 -699.09 -2.09 -31.58 16 19 C -0.26 -13.85 9.58 84.03 0.81 -13.05 16 20 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 21 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 22 N -0.94 -55.35 11.19 21.65 0.24 -55.11 16 23 Si 0.96 44.51 29.59 68.60 2.03 46.54 16 24 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 25 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 C 0.18 8.43 5.30 86.36 0.46 8.89 16 28 C -0.12 -4.39 4.97 30.67 0.15 -4.24 16 29 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 2.18 6.56 -2.38 -0.02 2.16 16 34 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 37 H 0.22 1.08 7.46 -2.91 -0.02 1.05 16 38 H 0.41 6.42 5.77 -92.71 -0.53 5.89 16 39 H 0.06 1.73 6.46 -2.39 -0.02 1.72 16 40 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.07 1.62 6.46 -2.39 -0.02 1.61 16 42 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.06 1.84 6.51 -2.38 -0.02 1.82 16 44 H 0.09 1.66 6.46 -2.39 -0.02 1.64 16 45 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 47 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 48 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 49 H 0.05 2.72 6.07 -2.39 -0.01 2.70 16 50 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.06 2.19 6.51 -2.39 -0.02 2.18 16 Total: -1.00 -75.26 396.94 3.62 -71.65 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.39 Total: 15.95 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 7.37 Total: 4.40 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -6.12 Total: -119.31 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.06 Total: -19.22 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -75.26 3.62 -71.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997628788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.233 kcal (2) G-P(sol) polarization free energy of solvation -75.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds