Wall clock time and date at job start Tue Mar 31 2020 18:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47527 * 2 1 4 4 C 1.38048 * 126.29378 * 270.00181 * 3 2 1 5 5 C 1.47432 * 126.41154 * 359.97438 * 4 3 2 6 6 O 1.21602 * 119.99927 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99874 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00305 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.46759 * 325.00222 * 8 7 5 10 10 C 1.53001 * 109.46978 * 84.99990 * 8 7 5 11 11 C 1.52992 * 109.47394 * 205.00335 * 8 7 5 12 12 C 1.53043 * 109.46181 * 300.02266 * 11 8 7 13 13 C 1.53191 * 109.31354 * 178.60193 * 12 11 8 14 14 N 1.46923 * 108.76746 * 54.65580 * 13 12 11 15 15 C 1.36939 * 120.62879 * 126.40124 * 14 13 12 16 16 H 1.08001 * 119.99992 * 332.61781 * 15 14 13 17 17 C 1.38811 * 119.99938 * 152.61292 * 15 14 13 18 18 N 1.31617 * 120.00447 * 159.34993 * 17 15 14 19 19 Si 1.86807 * 119.99771 * 339.34445 * 17 15 14 20 20 H 1.48494 * 109.46884 * 92.94749 * 19 17 15 21 21 H 1.48499 * 109.46723 * 212.94403 * 19 17 15 22 22 H 1.48497 * 109.47056 * 332.94360 * 19 17 15 23 23 C 1.46925 * 118.73864 * 306.38660 * 14 13 12 24 24 C 1.53039 * 109.46211 * 179.97438 * 11 8 7 25 25 C 1.41292 * 107.17159 * 180.25865 * 4 3 2 26 26 N 1.30448 * 108.02159 * 359.59158 * 25 4 3 27 27 N 1.34267 * 126.29452 * 90.02197 * 3 2 1 28 28 C 1.46502 * 125.75035 * 359.97438 * 27 3 2 29 29 H 1.09000 * 109.47058 * 59.99995 * 1 2 3 30 30 H 1.08995 * 109.47487 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46891 * 300.00158 * 1 2 3 32 32 H 1.09010 * 109.47469 * 239.99923 * 2 1 3 33 33 H 1.09000 * 109.47058 * 120.00005 * 2 1 3 34 34 H 0.97006 * 120.00245 * 0.02562 * 7 5 4 35 35 H 1.09006 * 109.46871 * 180.02562 * 10 8 7 36 36 H 1.08999 * 109.47265 * 299.99898 * 10 8 7 37 37 H 1.09003 * 109.47185 * 60.00494 * 10 8 7 38 38 H 1.09000 * 109.46315 * 59.99743 * 11 8 7 39 39 H 1.08995 * 109.50105 * 298.56726 * 12 11 8 40 40 H 1.09005 * 109.49233 * 58.66339 * 12 11 8 41 41 H 1.09007 * 109.59844 * 294.86953 * 13 12 11 42 42 H 1.08998 * 109.70205 * 174.51112 * 13 12 11 43 43 H 0.96998 * 120.00341 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.58427 * 293.81521 * 23 14 13 45 45 H 1.09002 * 109.70350 * 173.45954 * 23 14 13 46 46 H 1.09001 * 109.49791 * 301.33878 * 24 11 8 47 47 H 1.09006 * 109.49924 * 61.43049 * 24 11 8 48 48 H 1.07996 * 125.98581 * 179.73502 * 25 4 3 49 49 H 1.08997 * 109.47258 * 89.99621 * 28 27 3 50 50 H 1.08995 * 109.47205 * 210.00317 * 28 27 3 51 51 H 1.09009 * 109.46684 * 330.00089 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3048 2.1911 -1.1127 5 6 2.1591 1.7778 -2.5203 6 8 1.7636 0.6594 -2.7878 7 7 2.4633 2.6398 -3.5107 8 6 2.3180 2.2293 -4.9095 9 1 2.5702 1.1732 -5.0062 10 6 0.8725 2.4517 -5.3587 11 6 3.2579 3.0603 -5.7851 12 6 2.9040 4.5430 -5.6486 13 6 3.8691 5.3746 -6.4993 14 7 3.8366 4.8714 -7.8793 15 6 3.5905 5.7198 -8.9257 16 1 3.0046 6.6136 -8.7699 17 6 4.0940 5.4310 -10.1866 18 7 3.5531 5.9807 -11.2531 19 14 5.5397 4.2622 -10.3697 20 1 5.0361 2.8837 -10.5962 21 1 6.3717 4.6814 -11.5261 22 1 6.3605 4.2924 -9.1325 23 6 4.0736 3.4407 -8.1153 24 6 3.1064 2.6309 -7.2462 25 6 2.7556 3.4477 -0.6498 26 7 2.7422 3.4259 0.6544 27 7 2.2977 2.1699 1.0822 28 6 2.1472 1.7441 2.4758 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.7784 3.5320 -3.2974 35 1 0.7643 2.1458 -6.3994 36 1 0.2029 1.8595 -4.7349 37 1 0.6203 3.5077 -5.2620 38 1 4.2876 2.9018 -5.4649 39 1 1.8826 4.7065 -5.9922 40 1 2.9893 4.8427 -4.6040 41 1 4.8796 5.2832 -6.1008 42 1 3.5639 6.4209 -6.4846 43 1 3.9052 5.7792 -12.1341 44 1 5.1006 3.1916 -7.8486 45 1 3.9024 3.2083 -9.1664 46 1 3.3357 1.5693 -7.3390 47 1 2.0829 2.8125 -7.5746 48 1 3.0562 4.2809 -1.2676 49 1 3.0785 1.2955 2.8214 50 1 1.9080 2.6080 3.0959 51 1 1.3428 1.0118 2.5471 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997655510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:40 Heat of formation + Delta-G solvation = 50.566348 kcal Electronic energy + Delta-G solvation = -29631.147380 eV Core-core repulsion = 25760.438124 eV Total energy + Delta-G solvation = -3870.709256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.78325 -39.65813 -38.07982 -35.48553 -34.65202 -33.33303 -32.74788 -31.37059 -30.33900 -29.70182 -28.97700 -27.35325 -25.47301 -24.32236 -23.37032 -23.01740 -22.22468 -21.05720 -20.34473 -19.76891 -18.77521 -17.78914 -16.69193 -16.26022 -16.05711 -15.84705 -15.13676 -14.84162 -14.77766 -14.59093 -14.42431 -14.08333 -13.86678 -13.68142 -13.49168 -13.31591 -13.12486 -13.08987 -12.93343 -12.61574 -12.48620 -12.17073 -12.00936 -11.82871 -11.71749 -11.63283 -11.52553 -11.02182 -10.96467 -10.66020 -10.55587 -10.39372 -10.08275 -9.88416 -9.74897 -9.70826 -9.56242 -9.39327 -9.07465 -8.75999 -8.58016 -6.94191 -5.92503 -3.27707 1.26094 1.94989 1.99763 3.30520 3.34412 3.42207 3.50658 3.53649 4.09435 4.13801 4.51777 4.55512 4.64333 4.69898 4.87708 4.93141 4.93316 4.96918 5.02786 5.09728 5.10840 5.24714 5.26354 5.36867 5.44807 5.56378 5.59393 5.62682 5.78647 5.85656 5.89409 5.91180 5.99054 6.06358 6.12510 6.16982 6.19387 6.29646 6.40746 6.50121 6.52178 6.53603 6.61584 6.68194 6.72320 6.75176 7.03529 7.24384 7.63289 7.99483 8.33784 8.35425 8.97447 9.75210 10.13581 11.23588 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.025388 B = 0.002433 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.607040 B =11506.076019 C =11963.075814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.069 4.069 3 C 0.159 3.841 4 C -0.295 4.295 5 C 0.595 3.405 6 O -0.551 6.551 7 N -0.719 5.719 8 C 0.150 3.850 9 H 0.084 0.916 10 C -0.163 4.163 11 C -0.087 4.087 12 C -0.131 4.131 13 C 0.149 3.851 14 N -0.605 5.605 15 C -0.258 4.258 16 H 0.085 0.915 17 C 0.022 3.978 18 N -0.909 5.909 19 Si 0.883 3.117 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.271 1.271 23 C 0.126 3.874 24 C -0.127 4.127 25 C 0.084 3.916 26 N -0.299 5.299 27 N -0.364 5.364 28 C 0.095 3.905 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.397 0.603 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.020 0.980 42 H 0.062 0.938 43 H 0.262 0.738 44 H 0.023 0.977 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.190 0.810 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 -11.104 27.045 29.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C 0.027 3.973 4 C -0.309 4.309 5 C 0.383 3.617 6 O -0.430 6.430 7 N -0.370 5.370 8 C 0.046 3.954 9 H 0.102 0.898 10 C -0.221 4.221 11 C -0.106 4.106 12 C -0.170 4.170 13 C 0.023 3.977 14 N -0.329 5.329 15 C -0.386 4.386 16 H 0.102 0.898 17 C -0.177 4.177 18 N -0.553 5.553 19 Si 0.714 3.286 20 H -0.216 1.216 21 H -0.233 1.233 22 H -0.196 1.196 23 C 0.000 4.000 24 C -0.167 4.167 25 C -0.104 4.104 26 N -0.117 5.117 27 N -0.143 5.143 28 C -0.046 4.046 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.233 0.767 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.207 0.793 49 H 0.097 0.903 50 H 0.112 0.888 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.463 -11.197 27.896 30.388 hybrid contribution 0.932 -0.486 -0.774 1.305 sum -3.531 -11.683 27.122 29.741 Atomic orbital electron populations 1.21638 0.93393 1.02532 1.02239 1.20457 0.97106 0.88390 1.04854 1.21546 0.94743 0.94782 0.86254 1.20061 1.20698 0.96403 0.93760 1.17169 0.76613 0.84396 0.83569 1.90713 1.47578 1.20454 1.84271 1.45967 1.68029 1.16858 1.06100 1.21037 0.95737 0.99584 0.79080 0.89757 1.22237 0.95917 1.02167 1.01787 1.21318 0.98419 0.95376 0.95473 1.22121 1.01699 0.94657 0.98515 1.20905 0.95408 0.96554 0.84866 1.44340 1.83653 1.02603 1.02331 1.18918 1.27226 1.05627 0.86838 0.89770 1.25280 0.98655 0.98231 0.95504 1.69837 1.41061 1.46645 0.97708 0.86948 0.84758 0.80108 0.76829 1.21632 1.23278 1.19632 1.21320 0.95370 0.84580 0.98683 1.22079 1.01983 0.98713 0.93897 1.24054 0.97043 0.97317 0.91996 1.77195 1.22032 0.99196 1.13327 1.48351 1.49891 1.09773 1.06329 1.21964 1.03263 1.01889 0.77445 0.91519 0.91439 0.93318 0.86899 0.90878 0.76728 0.91151 0.92833 0.92051 0.91282 0.91184 0.93297 0.96194 0.91957 0.92822 0.95906 0.90955 0.92685 0.91040 0.79328 0.90279 0.88787 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.89 37.16 0.37 -0.68 16 2 C -0.07 -0.56 5.39 -27.89 -0.15 -0.71 16 3 C 0.16 1.61 6.26 -81.60 -0.51 1.10 16 4 C -0.29 -3.37 6.13 -105.06 -0.64 -4.02 16 5 C 0.59 7.72 7.78 -12.52 -0.10 7.62 16 6 O -0.55 -8.45 14.50 5.28 0.08 -8.38 16 7 N -0.72 -8.47 4.99 -54.88 -0.27 -8.74 16 8 C 0.15 1.97 2.40 -67.93 -0.16 1.81 16 9 H 0.08 1.21 7.58 -51.93 -0.39 0.82 16 10 C -0.16 -2.15 8.78 37.16 0.33 -1.82 16 11 C -0.09 -1.26 2.14 -90.58 -0.19 -1.45 16 12 C -0.13 -1.94 4.81 -26.61 -0.13 -2.06 16 13 C 0.15 2.78 6.52 -3.71 -0.02 2.76 16 14 N -0.61 -14.06 2.77 -172.32 -0.48 -14.53 16 15 C -0.26 -7.13 10.04 -15.06 -0.15 -7.29 16 16 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 17 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 18 N -0.91 -27.88 13.97 55.49 0.78 -27.11 16 19 Si 0.88 22.45 24.35 -169.99 -4.14 18.31 16 20 H -0.29 -7.08 6.62 56.52 0.37 -6.70 16 21 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 22 H -0.27 -6.78 6.63 56.52 0.37 -6.41 16 23 C 0.13 2.70 4.20 -3.71 -0.02 2.68 16 24 C -0.13 -2.16 4.96 -26.61 -0.13 -2.29 16 25 C 0.08 0.86 11.50 -16.98 -0.20 0.67 16 26 N -0.30 -3.31 12.50 30.86 0.39 -2.92 16 27 N -0.36 -3.37 3.98 -63.34 -0.25 -3.62 16 28 C 0.10 0.45 11.06 59.85 0.66 1.11 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.11 1.14 6.50 -51.92 -0.34 0.81 16 33 H 0.07 0.41 7.70 -51.93 -0.40 0.01 16 34 H 0.40 3.94 5.80 -40.82 -0.24 3.70 16 35 H 0.07 0.94 6.46 -51.93 -0.34 0.61 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.80 6.46 -51.93 -0.34 0.46 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.11 6.51 -51.93 -0.34 0.77 16 40 H 0.05 0.57 6.46 -51.93 -0.34 0.24 16 41 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.02 0.49 7.07 -51.93 -0.37 0.12 16 45 H 0.07 1.72 4.50 -51.93 -0.23 1.48 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 1.26 6.51 -51.93 -0.34 0.92 16 48 H 0.19 1.39 7.50 -52.49 -0.39 1.00 16 49 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 50 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.09 0.24 7.62 -51.92 -0.40 -0.15 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -34.25 388.76 -7.46 -41.71 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.27 Total: 1.45 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -1.14 Total: -2.03 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.16 Total: -56.92 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.14 Total: 18.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.25 -7.46 -41.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997655510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.277 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds