Wall clock time and date at job start Tue Mar 31 2020 18:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47527 * 2 1 4 4 C 1.38048 * 126.29378 * 270.00181 * 3 2 1 5 5 C 1.47432 * 126.41154 * 359.97438 * 4 3 2 6 6 O 1.21602 * 119.99927 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99874 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00305 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.46759 * 325.00222 * 8 7 5 10 10 C 1.53001 * 109.46978 * 84.99990 * 8 7 5 11 11 C 1.52992 * 109.47394 * 205.00335 * 8 7 5 12 12 C 1.53043 * 109.46181 * 300.02266 * 11 8 7 13 13 C 1.53191 * 109.31354 * 178.60193 * 12 11 8 14 14 N 1.46923 * 108.76746 * 54.65580 * 13 12 11 15 15 C 1.36939 * 120.62879 * 126.40124 * 14 13 12 16 16 H 1.08001 * 119.99992 * 332.61781 * 15 14 13 17 17 C 1.38811 * 119.99938 * 152.61292 * 15 14 13 18 18 N 1.31617 * 120.00447 * 159.34993 * 17 15 14 19 19 Si 1.86807 * 119.99771 * 339.34445 * 17 15 14 20 20 H 1.48494 * 109.46884 * 92.94749 * 19 17 15 21 21 H 1.48499 * 109.46723 * 212.94403 * 19 17 15 22 22 H 1.48497 * 109.47056 * 332.94360 * 19 17 15 23 23 C 1.46925 * 118.73864 * 306.38660 * 14 13 12 24 24 C 1.53039 * 109.46211 * 179.97438 * 11 8 7 25 25 C 1.41292 * 107.17159 * 180.25865 * 4 3 2 26 26 N 1.30448 * 108.02159 * 359.59158 * 25 4 3 27 27 N 1.34267 * 126.29452 * 90.02197 * 3 2 1 28 28 C 1.46502 * 125.75035 * 359.97438 * 27 3 2 29 29 H 1.09000 * 109.47058 * 59.99995 * 1 2 3 30 30 H 1.08995 * 109.47487 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46891 * 300.00158 * 1 2 3 32 32 H 1.09010 * 109.47469 * 239.99923 * 2 1 3 33 33 H 1.09000 * 109.47058 * 120.00005 * 2 1 3 34 34 H 0.97006 * 120.00245 * 0.02562 * 7 5 4 35 35 H 1.09006 * 109.46871 * 180.02562 * 10 8 7 36 36 H 1.08999 * 109.47265 * 299.99898 * 10 8 7 37 37 H 1.09003 * 109.47185 * 60.00494 * 10 8 7 38 38 H 1.09000 * 109.46315 * 59.99743 * 11 8 7 39 39 H 1.08995 * 109.50105 * 298.56726 * 12 11 8 40 40 H 1.09005 * 109.49233 * 58.66339 * 12 11 8 41 41 H 1.09007 * 109.59844 * 294.86953 * 13 12 11 42 42 H 1.08998 * 109.70205 * 174.51112 * 13 12 11 43 43 H 0.96998 * 120.00341 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.58427 * 293.81521 * 23 14 13 45 45 H 1.09002 * 109.70350 * 173.45954 * 23 14 13 46 46 H 1.09001 * 109.49791 * 301.33878 * 24 11 8 47 47 H 1.09006 * 109.49924 * 61.43049 * 24 11 8 48 48 H 1.07996 * 125.98581 * 179.73502 * 25 4 3 49 49 H 1.08997 * 109.47258 * 89.99621 * 28 27 3 50 50 H 1.08995 * 109.47205 * 210.00317 * 28 27 3 51 51 H 1.09009 * 109.46684 * 330.00089 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3048 2.1911 -1.1127 5 6 2.1591 1.7778 -2.5203 6 8 1.7636 0.6594 -2.7878 7 7 2.4633 2.6398 -3.5107 8 6 2.3180 2.2293 -4.9095 9 1 2.5702 1.1732 -5.0062 10 6 0.8725 2.4517 -5.3587 11 6 3.2579 3.0603 -5.7851 12 6 2.9040 4.5430 -5.6486 13 6 3.8691 5.3746 -6.4993 14 7 3.8366 4.8714 -7.8793 15 6 3.5905 5.7198 -8.9257 16 1 3.0046 6.6136 -8.7699 17 6 4.0940 5.4310 -10.1866 18 7 3.5531 5.9807 -11.2531 19 14 5.5397 4.2622 -10.3697 20 1 5.0361 2.8837 -10.5962 21 1 6.3717 4.6814 -11.5261 22 1 6.3605 4.2924 -9.1325 23 6 4.0736 3.4407 -8.1153 24 6 3.1064 2.6309 -7.2462 25 6 2.7556 3.4477 -0.6498 26 7 2.7422 3.4259 0.6544 27 7 2.2977 2.1699 1.0822 28 6 2.1472 1.7441 2.4758 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.7784 3.5320 -3.2974 35 1 0.7643 2.1458 -6.3994 36 1 0.2029 1.8595 -4.7349 37 1 0.6203 3.5077 -5.2620 38 1 4.2876 2.9018 -5.4649 39 1 1.8826 4.7065 -5.9922 40 1 2.9893 4.8427 -4.6040 41 1 4.8796 5.2832 -6.1008 42 1 3.5639 6.4209 -6.4846 43 1 3.9052 5.7792 -12.1341 44 1 5.1006 3.1916 -7.8486 45 1 3.9024 3.2083 -9.1664 46 1 3.3357 1.5693 -7.3390 47 1 2.0829 2.8125 -7.5746 48 1 3.0562 4.2809 -1.2676 49 1 3.0785 1.2955 2.8214 50 1 1.9080 2.6080 3.0959 51 1 1.3428 1.0118 2.5471 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997655510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:37 Heat of formation + Delta-G solvation = 27.504743 kcal Electronic energy + Delta-G solvation = -29632.147406 eV Core-core repulsion = 25760.438124 eV Total energy + Delta-G solvation = -3871.709282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 4.09 seconds Orbital eigenvalues (eV) -42.51194 -40.75524 -39.38277 -36.85658 -35.37201 -34.39324 -33.93511 -32.95505 -31.83957 -30.78152 -29.96640 -27.94855 -27.05803 -25.20252 -24.72833 -24.24314 -23.30326 -22.37523 -21.33052 -20.62166 -20.06902 -18.77155 -18.47206 -17.40259 -16.86564 -16.69613 -16.65452 -16.00804 -15.67903 -15.61452 -15.43839 -15.27266 -15.11885 -15.03027 -14.68468 -14.46963 -14.24488 -13.97169 -13.80499 -13.59808 -13.51596 -13.46224 -13.20987 -13.20320 -12.90305 -12.61780 -12.51526 -12.29864 -12.17154 -12.13535 -11.97957 -11.67333 -11.65711 -11.48026 -11.19335 -11.00149 -10.77513 -10.63809 -10.40760 -10.05512 -9.56431 -8.87935 -8.13791 -5.43995 0.51043 1.16622 1.31542 1.41348 1.42459 1.51412 2.36020 2.43939 2.51243 3.09490 3.40807 3.49559 3.52527 3.79453 3.89157 3.92630 3.99960 4.07132 4.28191 4.31230 4.35690 4.39913 4.41616 4.45862 4.52834 4.58982 4.61137 4.64496 4.67183 4.71098 4.77051 4.82850 4.95161 4.98652 5.02737 5.07061 5.13929 5.18388 5.23196 5.24191 5.29784 5.33898 5.35999 5.42175 5.63728 5.70699 5.89252 5.91240 6.16227 6.51151 6.72707 6.96820 7.39400 7.67658 8.08242 9.06281 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.025388 B = 0.002433 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.607040 B =11506.076019 C =11963.075814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.066 4.066 3 C 0.159 3.841 4 C -0.321 4.321 5 C 0.595 3.405 6 O -0.580 6.580 7 N -0.711 5.711 8 C 0.162 3.838 9 H 0.076 0.924 10 C -0.158 4.158 11 C -0.076 4.076 12 C -0.120 4.120 13 C 0.142 3.858 14 N -0.620 5.620 15 C -0.243 4.243 16 H 0.052 0.948 17 C -0.038 4.038 18 N -0.959 5.959 19 Si 0.946 3.054 20 H -0.276 1.276 21 H -0.314 1.314 22 H -0.261 1.261 23 C 0.120 3.880 24 C -0.121 4.121 25 C 0.084 3.916 26 N -0.324 5.324 27 N -0.361 5.361 28 C 0.083 3.917 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.408 0.592 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.034 0.966 42 H 0.054 0.946 43 H 0.260 0.740 44 H 0.031 0.969 45 H 0.046 0.954 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.212 0.788 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 -12.655 30.384 33.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 C 0.024 3.976 4 C -0.336 4.336 5 C 0.384 3.616 6 O -0.461 6.461 7 N -0.362 5.362 8 C 0.057 3.943 9 H 0.094 0.906 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.159 4.159 13 C 0.017 3.983 14 N -0.345 5.345 15 C -0.372 4.372 16 H 0.070 0.930 17 C -0.233 4.233 18 N -0.606 5.606 19 Si 0.776 3.224 20 H -0.203 1.203 21 H -0.243 1.243 22 H -0.186 1.186 23 C -0.005 4.005 24 C -0.160 4.160 25 C -0.103 4.103 26 N -0.143 5.143 27 N -0.140 5.140 28 C -0.056 4.056 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.245 0.755 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.229 0.771 49 H 0.112 0.888 50 H 0.119 0.881 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.871 -12.748 31.315 34.031 hybrid contribution 0.684 0.023 -1.676 1.811 sum -3.187 -12.724 29.639 32.412 Atomic orbital electron populations 1.21597 0.92897 1.03253 1.01552 1.20479 0.97399 0.87380 1.05269 1.21852 0.93923 0.95430 0.86353 1.20078 1.22707 0.97518 0.93259 1.17391 0.75970 0.83984 0.84288 1.90699 1.48965 1.21693 1.84764 1.45813 1.67865 1.17263 1.05279 1.20766 0.95123 0.98778 0.79612 0.90586 1.22183 0.95926 1.02127 1.01391 1.21198 0.99236 0.95126 0.93996 1.22004 0.99816 0.94181 0.99896 1.21128 0.97186 0.96911 0.83062 1.44496 1.83881 1.03080 1.03028 1.18880 1.25313 1.04925 0.88130 0.93010 1.25900 1.01193 1.00854 0.95323 1.69969 1.42852 1.49587 0.98153 0.85917 0.81290 0.78721 0.76519 1.20282 1.24328 1.18568 1.21368 0.96865 0.84051 0.98200 1.21969 1.00130 0.99226 0.94689 1.24417 0.96341 0.97526 0.92025 1.77147 1.22942 1.00468 1.13732 1.48686 1.48702 1.09026 1.07569 1.22372 1.05037 1.02918 0.75314 0.94310 0.90050 0.91804 0.89063 0.87823 0.75478 0.91586 0.93352 0.91847 0.90394 0.92200 0.89372 0.94754 0.92729 0.93111 0.95141 0.93598 0.90565 0.91924 0.77130 0.88769 0.88101 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.89 71.98 0.71 -1.06 16 2 C -0.07 -0.95 5.39 29.85 0.16 -0.79 16 3 C 0.16 2.91 6.26 42.14 0.26 3.17 16 4 C -0.32 -6.84 6.13 -20.15 -0.12 -6.96 16 5 C 0.59 14.59 7.78 86.67 0.67 15.26 16 6 O -0.58 -17.39 14.50 -4.04 -0.06 -17.45 16 7 N -0.71 -15.10 4.99 -445.81 -2.22 -17.32 16 8 C 0.16 3.91 2.40 44.99 0.11 4.02 16 9 H 0.08 2.04 7.58 -2.39 -0.02 2.02 16 10 C -0.16 -3.94 8.78 71.98 0.63 -3.31 16 11 C -0.08 -2.01 2.14 -10.77 -0.02 -2.03 16 12 C -0.12 -3.24 4.81 30.67 0.15 -3.09 16 13 C 0.14 5.06 6.52 86.36 0.56 5.62 16 14 N -0.62 -28.39 2.77 -699.11 -1.94 -30.32 16 15 C -0.24 -13.69 10.04 84.03 0.84 -12.85 16 16 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 17 C -0.04 -2.25 5.23 84.86 0.44 -1.81 16 18 N -0.96 -60.79 13.97 21.65 0.30 -60.49 16 19 Si 0.95 47.01 24.35 68.60 1.67 48.68 16 20 H -0.28 -13.00 6.62 99.48 0.66 -12.34 16 21 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 22 H -0.26 -12.37 6.63 99.48 0.66 -11.71 16 23 C 0.12 4.96 4.20 86.36 0.36 5.33 16 24 C -0.12 -3.87 4.96 30.67 0.15 -3.72 16 25 C 0.08 1.56 11.50 85.65 0.99 2.54 16 26 N -0.32 -6.51 12.50 -56.28 -0.70 -7.22 16 27 N -0.36 -5.83 3.98 -354.30 -1.41 -7.24 16 28 C 0.08 0.53 11.06 127.77 1.41 1.95 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 1.77 6.50 -2.38 -0.02 1.75 16 33 H 0.10 0.81 7.70 -2.39 -0.02 0.80 16 34 H 0.41 6.79 5.80 -92.70 -0.54 6.25 16 35 H 0.07 1.70 6.46 -2.38 -0.02 1.68 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.55 6.46 -2.39 -0.02 1.53 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.06 1.78 6.51 -2.39 -0.02 1.76 16 40 H 0.09 1.71 6.46 -2.38 -0.02 1.70 16 41 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 43 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.03 1.23 7.07 -2.39 -0.02 1.21 16 45 H 0.05 2.14 4.50 -2.39 -0.01 2.13 16 46 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.06 2.13 6.51 -2.38 -0.02 2.11 16 48 H 0.21 2.54 7.50 -2.91 -0.02 2.51 16 49 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 50 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.11 0.19 7.62 -2.38 -0.02 0.17 16 Total: -1.00 -76.50 388.76 3.26 -73.25 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.30 Total: 15.84 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 7.32 Total: 2.27 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -5.97 Total: -122.59 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.06 Total: -17.45 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.67 Total: 48.68 kcal Total: -76.50 3.26 -73.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997655510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.751 kcal (2) G-P(sol) polarization free energy of solvation -76.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.09 seconds