Wall clock time and date at job start Tue Mar 31 2020 19:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47086 * 2 1 4 4 C 1.50702 * 109.47113 * 180.02562 * 3 2 1 5 5 N 1.30444 * 125.99135 * 269.95442 * 4 3 2 6 6 N 1.39935 * 108.90185 * 180.02562 * 5 4 3 7 7 H 0.97000 * 125.75264 * 179.97438 * 6 5 4 8 8 C 1.34264 * 108.48673 * 359.75203 * 6 5 4 9 9 C 1.38038 * 107.41872 * 0.39525 * 8 6 5 10 10 C 1.47430 * 126.41351 * 179.87327 * 9 8 6 11 11 O 1.21609 * 119.99623 * 179.69044 * 10 9 8 12 12 N 1.34769 * 120.00203 * 359.68121 * 10 9 8 13 13 C 1.46495 * 120.00353 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.46938 * 325.00166 * 13 12 10 15 15 C 1.52998 * 109.47147 * 85.00250 * 13 12 10 16 16 C 1.53005 * 109.47359 * 205.00487 * 13 12 10 17 17 C 1.53040 * 109.45845 * 300.02468 * 16 13 12 18 18 C 1.53185 * 109.31582 * 178.60088 * 17 16 13 19 19 N 1.46928 * 108.76666 * 54.65545 * 18 17 16 20 20 C 1.36934 * 120.63629 * 126.40454 * 19 18 17 21 21 H 1.08005 * 119.99824 * 331.83185 * 20 19 18 22 22 C 1.38809 * 120.00436 * 151.83076 * 20 19 18 23 23 N 1.31625 * 119.99727 * 343.06826 * 22 20 19 24 24 Si 1.86799 * 120.00154 * 163.07497 * 22 20 19 25 25 H 1.48495 * 109.47182 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47129 * 119.99791 * 24 22 20 27 27 H 1.48503 * 109.46733 * 239.99795 * 24 22 20 28 28 C 1.46929 * 118.73667 * 306.38748 * 19 18 17 29 29 C 1.53044 * 109.45938 * 179.97438 * 16 13 12 30 30 H 1.09010 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47212 * 299.99887 * 1 2 3 32 32 H 1.08994 * 109.47042 * 60.00606 * 1 2 3 33 33 H 1.09003 * 109.47151 * 239.99383 * 2 1 3 34 34 H 1.09002 * 109.46922 * 120.00015 * 2 1 3 35 35 H 1.08999 * 109.47499 * 60.00162 * 3 2 1 36 36 H 1.09002 * 109.47252 * 299.99813 * 3 2 1 37 37 H 1.08002 * 126.28824 * 180.23983 * 8 6 5 38 38 H 0.97008 * 119.99789 * 0.02562 * 12 10 9 39 39 H 1.08996 * 109.47270 * 60.00119 * 15 13 12 40 40 H 1.09008 * 109.47113 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.47114 * 299.99611 * 15 13 12 42 42 H 1.08999 * 109.46286 * 59.99781 * 16 13 12 43 43 H 1.09002 * 109.50025 * 298.56780 * 17 16 13 44 44 H 1.09006 * 109.49700 * 58.65912 * 17 16 13 45 45 H 1.08998 * 109.59985 * 294.87219 * 18 17 16 46 46 H 1.08994 * 109.70637 * 174.50713 * 18 17 16 47 47 H 0.97000 * 119.99696 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.58533 * 293.82082 * 28 19 18 49 49 H 1.09002 * 109.70143 * 173.46278 * 28 19 18 50 50 H 1.09000 * 109.49721 * 301.33386 * 29 16 13 51 51 H 1.08998 * 109.49633 * 61.43430 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3140 1.4431 1.0545 6 7 5.6514 1.4434 0.6427 7 1 6.4247 1.4443 1.2283 8 6 5.6836 1.4374 -0.6996 9 6 4.3768 1.4424 -1.1442 10 6 3.9305 1.4412 -2.5494 11 8 2.7427 1.4403 -2.8100 12 7 4.8389 1.4413 -3.5449 13 6 4.3954 1.4408 -4.9412 14 1 3.4834 0.8509 -5.0324 15 6 4.1207 2.8775 -5.3896 16 6 5.4873 0.8312 -5.8229 17 6 6.7679 1.6592 -5.6940 18 6 7.8689 1.0262 -6.5506 19 7 7.3758 0.8884 -7.9278 20 6 8.0875 1.4027 -8.9786 21 1 8.7260 2.2610 -8.8297 22 6 7.9883 0.8210 -10.2350 23 7 7.4955 -0.3929 -10.3612 24 14 8.5546 1.7610 -11.7467 25 1 9.0645 3.0945 -11.3382 26 1 9.6369 1.0030 -12.4243 27 1 7.4118 1.9329 -12.6794 28 6 6.1046 0.1879 -8.1562 29 6 5.0234 0.8302 -7.2813 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 6.5692 1.4325 -1.3177 38 1 5.7864 1.4418 -3.3370 39 1 5.0327 3.4673 -5.2983 40 1 3.7903 2.8770 -6.4284 41 1 3.3428 3.3117 -4.7616 42 1 5.6829 -0.1923 -5.5033 43 1 6.5795 2.6765 -6.0370 44 1 7.0848 1.6792 -4.6512 45 1 8.1218 0.0433 -6.1531 46 1 8.7535 1.6628 -6.5413 47 1 7.4259 -0.7992 -11.2392 48 1 6.2136 -0.8634 -7.8895 49 1 5.8225 0.2713 -9.2058 50 1 4.0986 0.2600 -7.3685 51 1 4.8517 1.8554 -7.6091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997657172.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:02 Heat of formation + Delta-G solvation = 32.397932 kcal Electronic energy + Delta-G solvation = -29410.280614 eV Core-core repulsion = 25538.783516 eV Total energy + Delta-G solvation = -3871.497098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.68701 -39.56216 -37.88297 -35.57467 -35.05174 -32.91771 -31.83696 -31.49658 -30.35721 -29.65753 -28.68932 -27.27749 -25.45368 -23.95078 -22.94022 -22.28942 -22.05773 -20.89317 -20.07505 -19.74210 -18.86130 -18.39864 -16.75231 -16.49625 -15.73446 -15.43223 -15.23574 -14.82248 -14.61421 -14.45648 -14.20904 -14.00463 -13.83619 -13.61414 -13.40831 -13.17994 -13.04820 -12.62969 -12.48510 -12.20323 -12.06957 -11.70156 -11.62141 -11.41701 -11.39974 -11.23604 -11.19406 -10.90979 -10.74238 -10.72748 -10.43402 -10.15123 -10.09050 -9.97789 -9.80792 -9.72803 -9.50387 -9.39521 -9.13554 -8.82216 -8.47517 -6.67148 -5.79558 -3.22094 1.24989 1.95217 2.39802 3.31938 3.36119 3.43348 3.44308 3.46075 4.20305 4.35597 4.48745 4.81183 4.93854 4.97976 5.06881 5.11344 5.18003 5.24057 5.32752 5.37711 5.40548 5.54054 5.60063 5.67282 5.69372 5.74789 5.76571 5.88249 5.90134 6.06630 6.12227 6.12807 6.17728 6.19941 6.27511 6.29101 6.39389 6.44035 6.61248 6.64764 6.74529 6.77630 6.79223 6.82907 6.98212 7.25140 7.38662 7.65113 7.67250 7.79145 8.36144 8.44753 9.21045 9.84647 10.41367 11.28794 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.002345 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.203895 B =11939.828065 C =12609.396370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.045 4.045 4 C 0.138 3.862 5 N -0.300 5.300 6 N -0.462 5.462 7 H 0.443 0.557 8 C 0.103 3.897 9 C -0.283 4.283 10 C 0.591 3.409 11 O -0.542 6.542 12 N -0.720 5.720 13 C 0.148 3.852 14 H 0.084 0.916 15 C -0.162 4.162 16 C -0.085 4.085 17 C -0.128 4.128 18 C 0.145 3.855 19 N -0.591 5.591 20 C -0.251 4.251 21 H 0.065 0.935 22 C 0.001 3.999 23 N -0.902 5.902 24 Si 0.900 3.100 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.289 1.289 28 C 0.171 3.829 29 C -0.134 4.134 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.186 0.814 38 H 0.394 0.606 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.042 0.958 45 H 0.015 0.985 46 H 0.052 0.948 47 H 0.253 0.747 48 H 0.016 0.984 49 H 0.087 0.913 50 H 0.050 0.950 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 3.217 21.457 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.084 4.084 4 C -0.030 4.030 5 N -0.122 5.122 6 N -0.167 5.167 7 H 0.288 0.712 8 C -0.049 4.049 9 C -0.298 4.298 10 C 0.378 3.622 11 O -0.420 6.420 12 N -0.372 5.372 13 C 0.044 3.956 14 H 0.102 0.898 15 C -0.220 4.220 16 C -0.104 4.104 17 C -0.167 4.167 18 C 0.019 3.981 19 N -0.314 5.314 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.547 5.547 24 Si 0.731 3.269 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.215 1.215 28 C 0.045 3.955 29 C -0.173 4.173 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.203 0.797 38 H 0.229 0.771 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.033 0.967 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.034 0.966 49 H 0.105 0.895 50 H 0.069 0.931 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.389 3.132 22.368 23.764 hybrid contribution 1.499 0.367 -1.280 2.005 sum -5.890 3.499 21.088 22.173 Atomic orbital electron populations 1.21735 0.95324 1.01667 1.01934 1.21362 0.95997 0.95390 1.02161 1.20230 0.85266 0.98741 1.04167 1.22481 0.97099 0.94752 0.88671 1.77163 0.86210 1.26371 1.22499 1.46107 1.07862 1.57229 1.05463 0.71194 1.23195 0.99133 0.96907 0.85709 1.20400 0.92022 1.22508 0.94915 1.17230 0.85802 0.75782 0.83401 1.90734 1.16214 1.50808 1.84212 1.46070 1.09326 1.75432 1.06347 1.21091 0.98377 0.97107 0.79007 0.89763 1.22223 1.01606 0.96342 1.01815 1.21320 0.94115 0.99007 0.95966 1.22112 0.96398 1.00162 0.98041 1.20876 0.94029 0.96819 0.86387 1.44040 1.20533 1.66235 1.00618 1.19206 1.23291 1.07681 0.87881 0.91760 1.25045 1.00678 0.95217 0.98766 1.70043 1.49815 1.12350 1.22487 0.86252 0.77937 0.79420 0.83339 1.20297 1.21779 1.21546 1.20766 0.83207 0.92476 0.99003 1.22256 0.99479 1.01705 0.93903 0.92732 0.92903 0.92191 0.91394 0.92399 0.90728 0.87932 0.79724 0.77070 0.92274 0.91151 0.92919 0.91478 0.91663 0.93986 0.96745 0.92986 0.93697 0.96568 0.89473 0.93143 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.11 -1.11 5.92 -26.74 -0.16 -1.27 16 3 C -0.04 -0.48 5.25 -27.89 -0.15 -0.63 16 4 C 0.14 1.60 6.52 -82.02 -0.53 1.07 16 5 N -0.30 -3.29 12.63 33.90 0.43 -2.86 16 6 N -0.46 -3.48 7.29 30.85 0.22 -3.25 16 7 H 0.44 1.72 8.96 -182.72 -1.64 0.08 16 8 C 0.10 0.79 11.52 -16.56 -0.19 0.60 16 9 C -0.28 -3.16 6.13 -105.07 -0.64 -3.81 16 10 C 0.59 7.73 7.78 -12.52 -0.10 7.63 16 11 O -0.54 -8.63 14.58 5.27 0.08 -8.55 16 12 N -0.72 -8.44 4.99 -54.88 -0.27 -8.72 16 13 C 0.15 2.01 2.40 -67.93 -0.16 1.85 16 14 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 15 C -0.16 -2.18 8.78 37.16 0.33 -1.85 16 16 C -0.08 -1.29 2.14 -90.57 -0.19 -1.48 16 17 C -0.13 -1.94 4.81 -26.61 -0.13 -2.07 16 18 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 19 N -0.59 -14.22 2.99 -172.32 -0.52 -14.74 16 20 C -0.25 -6.71 9.58 -15.06 -0.14 -6.86 16 21 H 0.06 1.70 7.89 -52.48 -0.41 1.28 16 22 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 23 N -0.90 -25.85 11.19 55.49 0.62 -25.23 16 24 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 29 C -0.13 -2.40 4.97 -26.61 -0.13 -2.53 16 30 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 1.23 6.55 -51.93 -0.34 0.89 16 37 H 0.19 0.72 7.46 -52.49 -0.39 0.33 16 38 H 0.39 3.72 5.77 -40.82 -0.24 3.48 16 39 H 0.06 0.77 6.46 -51.93 -0.34 0.44 16 40 H 0.07 0.97 6.46 -51.92 -0.34 0.63 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.05 6.51 -51.93 -0.34 0.71 16 44 H 0.04 0.50 6.46 -51.93 -0.34 0.16 16 45 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 2.27 6.07 -51.93 -0.31 1.96 16 50 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.06 1.12 6.51 -51.93 -0.34 0.78 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -32.67 395.50 -10.08 -42.75 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -9.61 Total: 1.85 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.97 Total: -3.57 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.48 Total: -54.79 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.08 Total: -8.55 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.67 -10.08 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997657172.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.152 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds