Wall clock time and date at job start Tue Mar 31 2020 19:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47086 * 2 1 4 4 C 1.50702 * 109.47113 * 180.02562 * 3 2 1 5 5 N 1.30444 * 125.99135 * 269.95442 * 4 3 2 6 6 N 1.39935 * 108.90185 * 180.02562 * 5 4 3 7 7 H 0.97000 * 125.75264 * 179.97438 * 6 5 4 8 8 C 1.34264 * 108.48673 * 359.75203 * 6 5 4 9 9 C 1.38038 * 107.41872 * 0.39525 * 8 6 5 10 10 C 1.47430 * 126.41351 * 179.87327 * 9 8 6 11 11 O 1.21609 * 119.99623 * 179.69044 * 10 9 8 12 12 N 1.34769 * 120.00203 * 359.68121 * 10 9 8 13 13 C 1.46495 * 120.00353 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.46938 * 325.00166 * 13 12 10 15 15 C 1.52998 * 109.47147 * 85.00250 * 13 12 10 16 16 C 1.53005 * 109.47359 * 205.00487 * 13 12 10 17 17 C 1.53040 * 109.45845 * 300.02468 * 16 13 12 18 18 C 1.53185 * 109.31582 * 178.60088 * 17 16 13 19 19 N 1.46928 * 108.76666 * 54.65545 * 18 17 16 20 20 C 1.36934 * 120.63629 * 126.40454 * 19 18 17 21 21 H 1.08005 * 119.99824 * 331.83185 * 20 19 18 22 22 C 1.38809 * 120.00436 * 151.83076 * 20 19 18 23 23 N 1.31625 * 119.99727 * 343.06826 * 22 20 19 24 24 Si 1.86799 * 120.00154 * 163.07497 * 22 20 19 25 25 H 1.48495 * 109.47182 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47129 * 119.99791 * 24 22 20 27 27 H 1.48503 * 109.46733 * 239.99795 * 24 22 20 28 28 C 1.46929 * 118.73667 * 306.38748 * 19 18 17 29 29 C 1.53044 * 109.45938 * 179.97438 * 16 13 12 30 30 H 1.09010 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47212 * 299.99887 * 1 2 3 32 32 H 1.08994 * 109.47042 * 60.00606 * 1 2 3 33 33 H 1.09003 * 109.47151 * 239.99383 * 2 1 3 34 34 H 1.09002 * 109.46922 * 120.00015 * 2 1 3 35 35 H 1.08999 * 109.47499 * 60.00162 * 3 2 1 36 36 H 1.09002 * 109.47252 * 299.99813 * 3 2 1 37 37 H 1.08002 * 126.28824 * 180.23983 * 8 6 5 38 38 H 0.97008 * 119.99789 * 0.02562 * 12 10 9 39 39 H 1.08996 * 109.47270 * 60.00119 * 15 13 12 40 40 H 1.09008 * 109.47113 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.47114 * 299.99611 * 15 13 12 42 42 H 1.08999 * 109.46286 * 59.99781 * 16 13 12 43 43 H 1.09002 * 109.50025 * 298.56780 * 17 16 13 44 44 H 1.09006 * 109.49700 * 58.65912 * 17 16 13 45 45 H 1.08998 * 109.59985 * 294.87219 * 18 17 16 46 46 H 1.08994 * 109.70637 * 174.50713 * 18 17 16 47 47 H 0.97000 * 119.99696 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.58533 * 293.82082 * 28 19 18 49 49 H 1.09002 * 109.70143 * 173.46278 * 28 19 18 50 50 H 1.09000 * 109.49721 * 301.33386 * 29 16 13 51 51 H 1.08998 * 109.49633 * 61.43430 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3140 1.4431 1.0545 6 7 5.6514 1.4434 0.6427 7 1 6.4247 1.4443 1.2283 8 6 5.6836 1.4374 -0.6996 9 6 4.3768 1.4424 -1.1442 10 6 3.9305 1.4412 -2.5494 11 8 2.7427 1.4403 -2.8100 12 7 4.8389 1.4413 -3.5449 13 6 4.3954 1.4408 -4.9412 14 1 3.4834 0.8509 -5.0324 15 6 4.1207 2.8775 -5.3896 16 6 5.4873 0.8312 -5.8229 17 6 6.7679 1.6592 -5.6940 18 6 7.8689 1.0262 -6.5506 19 7 7.3758 0.8884 -7.9278 20 6 8.0875 1.4027 -8.9786 21 1 8.7260 2.2610 -8.8297 22 6 7.9883 0.8210 -10.2350 23 7 7.4955 -0.3929 -10.3612 24 14 8.5546 1.7610 -11.7467 25 1 9.0645 3.0945 -11.3382 26 1 9.6369 1.0030 -12.4243 27 1 7.4118 1.9329 -12.6794 28 6 6.1046 0.1879 -8.1562 29 6 5.0234 0.8302 -7.2813 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 6.5692 1.4325 -1.3177 38 1 5.7864 1.4418 -3.3370 39 1 5.0327 3.4673 -5.2983 40 1 3.7903 2.8770 -6.4284 41 1 3.3428 3.3117 -4.7616 42 1 5.6829 -0.1923 -5.5033 43 1 6.5795 2.6765 -6.0370 44 1 7.0848 1.6792 -4.6512 45 1 8.1218 0.0433 -6.1531 46 1 8.7535 1.6628 -6.5413 47 1 7.4259 -0.7992 -11.2392 48 1 6.2136 -0.8634 -7.8895 49 1 5.8225 0.2713 -9.2058 50 1 4.0986 0.2600 -7.3685 51 1 4.8517 1.8554 -7.6091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997657172.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:00 Heat of formation + Delta-G solvation = 11.606182 kcal Electronic energy + Delta-G solvation = -29411.182211 eV Core-core repulsion = 25538.783516 eV Total energy + Delta-G solvation = -3872.398696 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.42439 -40.66841 -39.21802 -36.78406 -36.08019 -34.41298 -32.97175 -32.54348 -31.60505 -31.09385 -29.93020 -28.02803 -27.10225 -25.22026 -24.18016 -23.63460 -22.90490 -22.18752 -21.16239 -20.59773 -20.10285 -19.33792 -18.51395 -17.47428 -16.99637 -16.50901 -16.25351 -16.02063 -15.71822 -15.49536 -15.35810 -15.29990 -15.21366 -14.92263 -14.62972 -14.20218 -14.05274 -14.01320 -13.90195 -13.54421 -13.00603 -12.95118 -12.88974 -12.80110 -12.60331 -12.44384 -12.40118 -12.16085 -12.09251 -11.95996 -11.90403 -11.60562 -11.55214 -11.53464 -11.13352 -10.90261 -10.73356 -10.50875 -10.48846 -10.07570 -9.69939 -8.62656 -7.83950 -5.28658 0.58136 1.11283 1.46802 1.49526 1.59092 1.82428 2.35275 2.52045 2.53618 3.30715 3.47186 3.74970 3.75867 3.87342 3.95422 4.11741 4.13707 4.18786 4.23404 4.38651 4.43891 4.46592 4.51063 4.61638 4.67293 4.69157 4.79685 4.86102 4.86581 4.90467 4.99285 5.01359 5.04357 5.11194 5.14627 5.23209 5.30290 5.34354 5.34881 5.39296 5.43188 5.47616 5.49773 5.62779 5.66014 5.71861 5.86143 6.28617 6.43478 6.51621 6.76855 7.19269 7.42519 7.92419 8.43045 9.22140 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.002345 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.203895 B =11939.828065 C =12609.396370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.043 4.043 4 C 0.123 3.877 5 N -0.324 5.324 6 N -0.447 5.447 7 H 0.461 0.539 8 C 0.134 3.866 9 C -0.318 4.318 10 C 0.591 3.409 11 O -0.578 6.578 12 N -0.709 5.709 13 C 0.161 3.839 14 H 0.069 0.931 15 C -0.156 4.156 16 C -0.074 4.074 17 C -0.115 4.115 18 C 0.139 3.861 19 N -0.610 5.610 20 C -0.255 4.255 21 H 0.067 0.933 22 C -0.054 4.054 23 N -0.937 5.937 24 Si 0.962 3.038 25 H -0.265 1.265 26 H -0.294 1.294 27 H -0.293 1.293 28 C 0.178 3.822 29 C -0.122 4.122 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.231 0.769 38 H 0.409 0.591 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.013 0.987 46 H 0.054 0.946 47 H 0.248 0.752 48 H -0.008 1.008 49 H 0.049 0.951 50 H 0.060 0.940 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 4.463 23.616 24.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.082 4.082 4 C -0.044 4.044 5 N -0.146 5.146 6 N -0.153 5.153 7 H 0.309 0.691 8 C -0.021 4.021 9 C -0.333 4.333 10 C 0.380 3.620 11 O -0.459 6.459 12 N -0.362 5.362 13 C 0.057 3.943 14 H 0.087 0.913 15 C -0.214 4.214 16 C -0.093 4.093 17 C -0.154 4.154 18 C 0.014 3.986 19 N -0.334 5.334 20 C -0.386 4.386 21 H 0.085 0.915 22 C -0.249 4.249 23 N -0.583 5.583 24 Si 0.791 3.209 25 H -0.190 1.190 26 H -0.222 1.222 27 H -0.220 1.220 28 C 0.052 3.948 29 C -0.162 4.162 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.247 0.753 38 H 0.246 0.754 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.031 0.969 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.010 0.990 49 H 0.068 0.932 50 H 0.079 0.921 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.091 4.398 24.593 25.715 hybrid contribution 1.184 -0.048 -1.875 2.218 sum -4.907 4.351 22.718 23.646 Atomic orbital electron populations 1.21719 0.94269 1.02220 1.02175 1.21290 0.96911 0.94938 1.01154 1.20169 0.85579 0.98821 1.03668 1.22602 0.97461 0.95131 0.89240 1.77105 0.87641 1.27217 1.22670 1.46152 1.07460 1.55685 1.05977 0.69094 1.23756 0.99132 0.93397 0.85778 1.20329 0.93650 1.25661 0.93654 1.17493 0.85344 0.74919 0.84261 1.90720 1.17846 1.52509 1.84816 1.45839 1.09967 1.75180 1.05175 1.20752 0.96974 0.96801 0.79813 0.91332 1.22162 1.01833 0.96138 1.01285 1.21157 0.94719 0.99262 0.94145 1.21977 0.94459 0.99182 0.99739 1.21092 0.95723 0.97191 0.84616 1.44322 1.20891 1.66134 1.02049 1.19543 1.22661 1.07448 0.88910 0.91494 1.25773 1.01714 0.96002 1.01416 1.70194 1.51724 1.13872 1.22534 0.85276 0.77050 0.78617 0.79940 1.18965 1.22152 1.21957 1.20545 0.84651 0.91713 0.97890 1.22053 0.98056 1.01069 0.95013 0.92028 0.91553 0.93028 0.93520 0.92076 0.89791 0.89701 0.75321 0.75386 0.91364 0.91788 0.93398 0.91629 0.91865 0.89387 0.96879 0.92713 0.94297 0.98978 0.93245 0.92146 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.91 71.98 0.71 -1.75 16 2 C -0.10 -2.11 5.92 30.59 0.18 -1.93 16 3 C -0.04 -0.92 5.25 29.85 0.16 -0.76 16 4 C 0.12 2.73 6.52 43.52 0.28 3.01 16 5 N -0.32 -6.46 12.63 -46.67 -0.59 -7.05 16 6 N -0.45 -5.19 7.29 -56.32 -0.41 -5.60 16 7 H 0.46 1.80 8.96 -213.43 -1.91 -0.12 16 8 C 0.13 1.50 11.52 84.27 0.97 2.48 16 9 C -0.32 -6.42 6.13 -20.15 -0.12 -6.55 16 10 C 0.59 14.55 7.78 86.67 0.67 15.22 16 11 O -0.58 -18.42 14.58 -4.06 -0.06 -18.48 16 12 N -0.71 -14.61 4.99 -445.81 -2.22 -16.83 16 13 C 0.16 4.07 2.40 44.99 0.11 4.18 16 14 H 0.07 2.01 7.58 -2.39 -0.02 1.99 16 15 C -0.16 -3.90 8.78 71.98 0.63 -3.27 16 16 C -0.07 -2.09 2.14 -10.76 -0.02 -2.11 16 17 C -0.11 -3.10 4.81 30.67 0.15 -2.96 16 18 C 0.14 5.16 6.52 86.36 0.56 5.72 16 19 N -0.61 -29.32 2.99 -699.09 -2.09 -31.41 16 20 C -0.26 -13.66 9.58 84.03 0.81 -12.86 16 21 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 22 C -0.05 -2.99 4.92 84.86 0.42 -2.57 16 23 N -0.94 -55.27 11.19 21.65 0.24 -55.03 16 24 Si 0.96 44.49 29.59 68.60 2.03 46.52 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 28 C 0.18 8.36 5.30 86.36 0.46 8.82 16 29 C -0.12 -4.35 4.97 30.67 0.15 -4.19 16 30 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 2.11 6.55 -2.39 -0.02 2.09 16 37 H 0.23 0.35 7.46 -2.91 -0.02 0.33 16 38 H 0.41 5.82 5.77 -92.70 -0.53 5.28 16 39 H 0.07 1.58 6.46 -2.39 -0.02 1.57 16 40 H 0.06 1.68 6.46 -2.38 -0.02 1.66 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.06 1.80 6.51 -2.39 -0.02 1.79 16 44 H 0.09 1.61 6.46 -2.38 -0.02 1.59 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 47 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 48 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 49 H 0.05 2.68 6.07 -2.39 -0.01 2.67 16 50 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.06 2.16 6.51 -2.39 -0.02 2.15 16 Total: -1.00 -74.02 395.50 1.51 -72.51 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -1.50 Total: 14.88 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 6.12 Total: 0.48 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -5.07 Total: -115.92 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.06 Total: -18.48 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -74.02 1.51 -72.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997657172.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.117 kcal (2) G-P(sol) polarization free energy of solvation -74.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds