Wall clock time and date at job start Tue Mar 31 2020 19:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47347 * 2 1 4 4 C 1.50696 * 109.47364 * 179.97438 * 3 2 1 5 5 C 1.35364 * 126.38878 * 275.27028 * 4 3 2 6 6 C 1.41498 * 105.50740 * 180.15422 * 5 4 3 7 7 C 1.47704 * 126.52132 * 179.90111 * 6 5 4 8 8 O 1.21572 * 120.00288 * 359.70911 * 7 6 5 9 9 N 1.34780 * 120.00046 * 179.70729 * 7 6 5 10 10 C 1.46503 * 119.99917 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46958 * 324.99798 * 10 9 7 12 12 C 1.52995 * 109.47370 * 85.00158 * 10 9 7 13 13 C 1.52996 * 109.47167 * 205.00319 * 10 9 7 14 14 C 1.53039 * 109.46386 * 179.97438 * 13 10 9 15 15 C 1.53187 * 109.31537 * 181.36936 * 14 13 10 16 16 N 1.46924 * 108.77714 * 305.36663 * 15 14 13 17 17 C 1.36941 * 120.63042 * 233.58961 * 16 15 14 18 18 H 1.08000 * 120.00035 * 27.49064 * 17 16 15 19 19 C 1.38812 * 119.99547 * 207.49672 * 17 16 15 20 20 N 1.31617 * 120.00435 * 18.19652 * 19 17 16 21 21 Si 1.86802 * 119.99734 * 197.91891 * 19 17 16 22 22 H 1.48498 * 109.47188 * 84.85121 * 21 19 17 23 23 H 1.48499 * 109.47180 * 204.85412 * 21 19 17 24 24 H 1.48506 * 109.47075 * 324.85265 * 21 19 17 25 25 C 1.46929 * 118.73893 * 53.85900 * 16 15 14 26 26 C 1.53043 * 109.44650 * 300.05944 * 13 10 9 27 27 N 1.31814 * 106.96251 * 359.63247 * 6 5 4 28 28 N 1.28467 * 110.06902 * 0.22953 * 27 6 5 29 29 H 0.97003 * 124.88024 * 180.02562 * 28 27 6 30 30 H 1.09010 * 109.47062 * 59.99599 * 1 2 3 31 31 H 1.08992 * 109.47823 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47195 * 300.00353 * 1 2 3 33 33 H 1.08998 * 109.47072 * 239.99660 * 2 1 3 34 34 H 1.09004 * 109.46447 * 120.00125 * 2 1 3 35 35 H 1.09007 * 109.47261 * 59.99687 * 3 2 1 36 36 H 1.08996 * 109.47183 * 300.00122 * 3 2 1 37 37 H 1.08003 * 127.24580 * 0.03053 * 5 4 3 38 38 H 0.96997 * 119.99914 * 359.97438 * 9 7 6 39 39 H 1.08992 * 109.47301 * 59.99668 * 12 10 9 40 40 H 1.08999 * 109.47436 * 180.02562 * 12 10 9 41 41 H 1.09006 * 109.46960 * 300.00047 * 12 10 9 42 42 H 1.08999 * 109.46133 * 60.02210 * 13 10 9 43 43 H 1.09002 * 109.49807 * 61.41330 * 14 13 10 44 44 H 1.08997 * 109.49604 * 301.32538 * 14 13 10 45 45 H 1.09002 * 109.58741 * 185.57736 * 15 14 13 46 46 H 1.09002 * 109.70527 * 65.22402 * 15 14 13 47 47 H 0.97001 * 120.00020 * 179.72213 * 20 19 17 48 48 H 1.08992 * 109.58381 * 65.93197 * 25 16 15 49 49 H 1.09006 * 109.58258 * 186.35568 * 25 16 15 50 50 H 1.08997 * 109.50083 * 298.57042 * 26 13 10 51 51 H 1.09002 * 109.49820 * 58.67005 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3496 1.3425 1.0861 6 6 5.6719 1.3924 0.5848 7 6 6.9159 1.3229 1.3780 8 8 6.8603 1.2167 2.5878 9 7 8.1127 1.3772 0.7606 10 6 9.3466 1.3088 1.5474 11 1 9.1986 1.8173 2.5001 12 6 9.7089 -0.1557 1.8018 13 6 10.4808 1.9884 0.7775 14 6 11.7695 1.9174 1.5999 15 6 12.8944 2.6285 0.8414 16 7 13.0028 2.0431 -0.5018 17 6 14.2019 1.5669 -0.9607 18 1 14.9413 1.2032 -0.2626 19 6 14.4670 1.5518 -2.3232 20 7 13.7561 2.2995 -3.1404 21 14 15.8380 0.4761 -2.9960 22 1 15.3231 -0.8983 -3.2223 23 1 16.3246 1.0401 -4.2807 24 1 16.9563 0.4312 -2.0199 25 6 11.8014 1.9837 -1.3456 26 6 10.6871 1.2751 -0.5607 27 7 5.5824 1.5069 -0.7254 28 7 4.3485 1.5374 -1.0819 29 1 4.0375 1.6169 -1.9973 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 4.0449 1.2470 2.1178 38 1 8.1571 1.4615 -0.2047 39 1 9.8568 -0.6642 0.8491 40 1 10.6266 -0.2066 2.3876 41 1 8.9008 -0.6399 2.3503 42 1 10.2228 3.0318 0.5968 43 1 12.0417 0.8742 1.7604 44 1 11.6143 2.4054 2.5621 45 1 13.8357 2.4958 1.3749 46 1 12.6677 3.6915 0.7594 47 1 13.9440 2.2920 -4.0920 48 1 11.4849 2.9946 -1.6023 49 1 12.0213 1.4253 -2.2556 50 1 10.9694 0.2378 -0.3804 51 1 9.7618 1.3061 -1.1360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997697578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:23 Heat of formation + Delta-G solvation = 33.438684 kcal Electronic energy + Delta-G solvation = -28848.801131 eV Core-core repulsion = 24977.349164 eV Total energy + Delta-G solvation = -3871.451967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.91213 -39.67023 -37.88713 -35.79799 -35.21886 -32.95049 -32.08947 -31.34062 -30.70613 -29.90895 -28.70855 -26.89149 -25.49223 -24.53803 -22.90048 -22.39643 -22.21613 -21.26859 -20.48667 -19.83774 -18.61021 -17.95336 -17.05838 -16.61127 -16.00540 -15.69682 -15.54286 -14.83259 -14.60906 -14.45991 -14.08764 -14.02127 -13.93252 -13.71609 -13.49816 -13.42627 -12.95320 -12.69179 -12.63991 -12.41521 -12.16223 -11.95307 -11.78936 -11.55544 -11.45259 -11.29444 -11.13821 -10.99930 -10.79017 -10.69978 -10.44223 -10.17244 -10.10370 -10.00854 -9.80733 -9.60458 -9.50577 -9.30574 -9.21317 -8.86162 -8.42711 -6.63676 -5.75682 -3.16476 1.44889 1.87498 2.58818 3.28463 3.39953 3.44049 3.46679 3.47515 4.16666 4.28264 4.44514 4.52733 4.53955 4.82420 4.93697 5.07520 5.19600 5.23240 5.25012 5.28754 5.37874 5.40817 5.44618 5.52383 5.56319 5.58990 5.72858 5.74676 5.79281 5.81840 5.93765 6.10281 6.14271 6.20970 6.23698 6.34397 6.41998 6.53541 6.63370 6.67672 6.75092 6.79149 6.82986 6.88643 7.06073 7.41560 7.51183 7.69381 7.78509 7.83086 8.30778 8.48494 9.25085 9.89235 10.46034 11.32724 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019510 B = 0.002176 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.848344 B =12866.177969 C =13724.905196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.050 4.050 4 C 0.013 3.987 5 C -0.175 4.175 6 C -0.008 4.008 7 C 0.601 3.399 8 O -0.539 6.539 9 N -0.706 5.706 10 C 0.146 3.854 11 H 0.084 0.916 12 C -0.163 4.163 13 C -0.086 4.086 14 C -0.125 4.125 15 C 0.145 3.855 16 N -0.592 5.592 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.280 1.280 25 C 0.171 3.829 26 C -0.137 4.137 27 N -0.255 5.255 28 N -0.380 5.380 29 H 0.444 0.556 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.161 0.839 38 H 0.407 0.593 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.016 0.984 47 H 0.253 0.747 48 H 0.016 0.984 49 H 0.087 0.913 50 H 0.061 0.939 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.497 -2.582 5.461 26.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.089 4.089 4 C -0.112 4.112 5 C -0.203 4.203 6 C -0.170 4.170 7 C 0.385 3.615 8 O -0.414 6.414 9 N -0.358 5.358 10 C 0.042 3.958 11 H 0.102 0.898 12 C -0.221 4.221 13 C -0.105 4.105 14 C -0.165 4.165 15 C 0.019 3.981 16 N -0.314 5.314 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.046 3.954 26 C -0.176 4.176 27 N -0.091 5.091 28 N -0.094 5.094 29 H 0.288 0.712 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.179 0.821 38 H 0.244 0.756 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.034 0.966 47 H 0.063 0.937 48 H 0.034 0.966 49 H 0.105 0.895 50 H 0.080 0.920 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -24.776 -2.546 5.244 25.453 hybrid contribution 0.022 -0.467 -0.819 0.943 sum -24.754 -3.013 4.425 25.326 Atomic orbital electron populations 1.21782 0.95188 1.02080 1.02010 1.21551 0.96030 0.95459 1.02941 1.20222 0.86262 0.98326 1.04084 1.21427 0.95022 1.07396 0.87377 1.21494 0.90432 1.08636 0.99776 1.22027 0.95374 1.09670 0.89881 1.16904 0.81796 0.76477 0.86328 1.90774 1.86882 1.50590 1.13186 1.46110 1.05086 1.72930 1.11673 1.21145 0.82796 0.96856 0.95028 0.89837 1.22231 1.01583 0.96003 1.02258 1.21316 0.93577 0.99315 0.96255 1.22065 0.95412 1.01674 0.97339 1.20891 0.95612 0.94240 0.87375 1.44065 1.05833 1.69457 1.12085 1.19198 0.94007 1.33884 0.90841 0.91690 1.25010 0.98501 0.99007 0.97270 1.70041 1.42692 1.38875 1.03187 0.86329 0.81825 0.80497 0.78239 1.21467 1.21843 1.20532 1.20851 0.83784 0.96999 0.93811 1.22367 0.99413 1.00501 0.95339 1.73609 1.01491 1.18854 1.15108 1.43325 1.02943 1.53226 1.09880 0.71172 0.92660 0.92401 0.92375 0.91944 0.91109 0.88985 0.90581 0.82123 0.75623 0.91931 0.91143 0.92926 0.91409 0.91696 0.93011 0.92822 0.96604 0.93710 0.96565 0.89516 0.92011 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.91 37.16 0.37 -0.21 16 2 C -0.12 -0.58 5.92 -26.73 -0.16 -0.74 16 3 C -0.05 -0.24 5.77 -27.89 -0.16 -0.40 16 4 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 5 C -0.18 -1.93 10.73 -39.37 -0.42 -2.35 16 6 C -0.01 -0.11 7.13 -82.77 -0.59 -0.70 16 7 C 0.60 9.28 7.79 -12.39 -0.10 9.18 16 8 O -0.54 -9.61 16.59 5.30 0.09 -9.52 16 9 N -0.71 -10.37 5.00 -54.79 -0.27 -10.64 16 10 C 0.15 2.20 2.40 -67.93 -0.16 2.03 16 11 H 0.08 1.32 7.58 -51.93 -0.39 0.92 16 12 C -0.16 -2.37 8.78 37.15 0.33 -2.05 16 13 C -0.09 -1.42 2.14 -90.58 -0.19 -1.61 16 14 C -0.13 -2.15 4.97 -26.61 -0.13 -2.28 16 15 C 0.15 3.04 6.51 -3.71 -0.02 3.02 16 16 N -0.59 -14.73 2.99 -172.05 -0.51 -15.25 16 17 C -0.25 -6.85 9.59 -15.06 -0.14 -7.00 16 18 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 19 C 0.00 0.01 4.89 -17.43 -0.09 -0.07 16 20 N -0.90 -26.26 11.21 55.49 0.62 -25.64 16 21 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.17 4.04 5.35 -3.48 -0.02 4.02 16 26 C -0.14 -2.53 4.83 -26.38 -0.13 -2.66 16 27 N -0.25 -3.07 11.92 33.42 0.40 -2.67 16 28 N -0.38 -3.21 6.83 33.50 0.23 -2.98 16 29 H 0.44 2.18 8.96 -190.44 -1.71 0.47 16 30 H 0.05 0.18 8.14 -51.92 -0.42 -0.24 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.20 8.14 -51.92 -0.42 -0.22 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.39 8.14 -51.92 -0.42 -0.04 16 36 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 38 H 0.41 5.76 6.57 -40.82 -0.27 5.50 16 39 H 0.06 0.93 6.46 -51.93 -0.34 0.60 16 40 H 0.07 0.99 6.46 -51.93 -0.34 0.65 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.13 6.51 -51.93 -0.34 0.79 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 2.30 6.03 -51.93 -0.31 1.99 16 50 H 0.06 1.18 6.51 -51.93 -0.34 0.84 16 51 H 0.04 0.73 6.46 -51.93 -0.34 0.39 16 LS Contribution 400.06 15.07 6.03 6.03 Total: -1.00 -32.71 400.06 -10.43 -43.14 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -9.82 Total: 3.00 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.16 Total: -2.24 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.46 Total: -57.18 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.71 -10.43 -43.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997697578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.582 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds