Wall clock time and date at job start Tue Mar 31 2020 19:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47347 * 2 1 4 4 C 1.50696 * 109.47364 * 179.97438 * 3 2 1 5 5 C 1.35364 * 126.38878 * 275.27028 * 4 3 2 6 6 C 1.41498 * 105.50740 * 180.15422 * 5 4 3 7 7 C 1.47704 * 126.52132 * 179.90111 * 6 5 4 8 8 O 1.21572 * 120.00288 * 359.70911 * 7 6 5 9 9 N 1.34780 * 120.00046 * 179.70729 * 7 6 5 10 10 C 1.46503 * 119.99917 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46958 * 324.99798 * 10 9 7 12 12 C 1.52995 * 109.47370 * 85.00158 * 10 9 7 13 13 C 1.52996 * 109.47167 * 205.00319 * 10 9 7 14 14 C 1.53039 * 109.46386 * 179.97438 * 13 10 9 15 15 C 1.53187 * 109.31537 * 181.36936 * 14 13 10 16 16 N 1.46924 * 108.77714 * 305.36663 * 15 14 13 17 17 C 1.36941 * 120.63042 * 233.58961 * 16 15 14 18 18 H 1.08000 * 120.00035 * 27.49064 * 17 16 15 19 19 C 1.38812 * 119.99547 * 207.49672 * 17 16 15 20 20 N 1.31617 * 120.00435 * 18.19652 * 19 17 16 21 21 Si 1.86802 * 119.99734 * 197.91891 * 19 17 16 22 22 H 1.48498 * 109.47188 * 84.85121 * 21 19 17 23 23 H 1.48499 * 109.47180 * 204.85412 * 21 19 17 24 24 H 1.48506 * 109.47075 * 324.85265 * 21 19 17 25 25 C 1.46929 * 118.73893 * 53.85900 * 16 15 14 26 26 C 1.53043 * 109.44650 * 300.05944 * 13 10 9 27 27 N 1.31814 * 106.96251 * 359.63247 * 6 5 4 28 28 N 1.28467 * 110.06902 * 0.22953 * 27 6 5 29 29 H 0.97003 * 124.88024 * 180.02562 * 28 27 6 30 30 H 1.09010 * 109.47062 * 59.99599 * 1 2 3 31 31 H 1.08992 * 109.47823 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47195 * 300.00353 * 1 2 3 33 33 H 1.08998 * 109.47072 * 239.99660 * 2 1 3 34 34 H 1.09004 * 109.46447 * 120.00125 * 2 1 3 35 35 H 1.09007 * 109.47261 * 59.99687 * 3 2 1 36 36 H 1.08996 * 109.47183 * 300.00122 * 3 2 1 37 37 H 1.08003 * 127.24580 * 0.03053 * 5 4 3 38 38 H 0.96997 * 119.99914 * 359.97438 * 9 7 6 39 39 H 1.08992 * 109.47301 * 59.99668 * 12 10 9 40 40 H 1.08999 * 109.47436 * 180.02562 * 12 10 9 41 41 H 1.09006 * 109.46960 * 300.00047 * 12 10 9 42 42 H 1.08999 * 109.46133 * 60.02210 * 13 10 9 43 43 H 1.09002 * 109.49807 * 61.41330 * 14 13 10 44 44 H 1.08997 * 109.49604 * 301.32538 * 14 13 10 45 45 H 1.09002 * 109.58741 * 185.57736 * 15 14 13 46 46 H 1.09002 * 109.70527 * 65.22402 * 15 14 13 47 47 H 0.97001 * 120.00020 * 179.72213 * 20 19 17 48 48 H 1.08992 * 109.58381 * 65.93197 * 25 16 15 49 49 H 1.09006 * 109.58258 * 186.35568 * 25 16 15 50 50 H 1.08997 * 109.50083 * 298.57042 * 26 13 10 51 51 H 1.09002 * 109.49820 * 58.67005 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3496 1.3425 1.0861 6 6 5.6719 1.3924 0.5848 7 6 6.9159 1.3229 1.3780 8 8 6.8603 1.2167 2.5878 9 7 8.1127 1.3772 0.7606 10 6 9.3466 1.3088 1.5474 11 1 9.1986 1.8173 2.5001 12 6 9.7089 -0.1557 1.8018 13 6 10.4808 1.9884 0.7775 14 6 11.7695 1.9174 1.5999 15 6 12.8944 2.6285 0.8414 16 7 13.0028 2.0431 -0.5018 17 6 14.2019 1.5669 -0.9607 18 1 14.9413 1.2032 -0.2626 19 6 14.4670 1.5518 -2.3232 20 7 13.7561 2.2995 -3.1404 21 14 15.8380 0.4761 -2.9960 22 1 15.3231 -0.8983 -3.2223 23 1 16.3246 1.0401 -4.2807 24 1 16.9563 0.4312 -2.0199 25 6 11.8014 1.9837 -1.3456 26 6 10.6871 1.2751 -0.5607 27 7 5.5824 1.5069 -0.7254 28 7 4.3485 1.5374 -1.0819 29 1 4.0375 1.6169 -1.9973 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 4.0449 1.2470 2.1178 38 1 8.1571 1.4615 -0.2047 39 1 9.8568 -0.6642 0.8491 40 1 10.6266 -0.2066 2.3876 41 1 8.9008 -0.6399 2.3503 42 1 10.2228 3.0318 0.5968 43 1 12.0417 0.8742 1.7604 44 1 11.6143 2.4054 2.5621 45 1 13.8357 2.4958 1.3749 46 1 12.6677 3.6915 0.7594 47 1 13.9440 2.2920 -4.0920 48 1 11.4849 2.9946 -1.6023 49 1 12.0213 1.4253 -2.2556 50 1 10.9694 0.2378 -0.3804 51 1 9.7618 1.3061 -1.1360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997697578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:21 Heat of formation + Delta-G solvation = 13.007970 kcal Electronic energy + Delta-G solvation = -28849.687074 eV Core-core repulsion = 24977.349164 eV Total energy + Delta-G solvation = -3872.337910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.71690 -40.93476 -39.37893 -36.79595 -36.23582 -34.54294 -33.21103 -32.39092 -31.80685 -31.57228 -30.19214 -27.40041 -27.15056 -25.84358 -24.39592 -23.85283 -22.87261 -22.03791 -21.92695 -20.98330 -20.15464 -18.70449 -18.59704 -18.02645 -17.01763 -16.80398 -16.76274 -15.94652 -15.83503 -15.65886 -15.51898 -15.36961 -15.06984 -14.77365 -14.62780 -14.55999 -14.11200 -14.08379 -13.92843 -13.59244 -13.14540 -13.04665 -12.94947 -12.87460 -12.55341 -12.46348 -12.44243 -12.16891 -12.12319 -11.92873 -11.90244 -11.72646 -11.54531 -11.51581 -11.31580 -11.07583 -10.95980 -10.51038 -10.49389 -10.06084 -9.95804 -8.66079 -7.85448 -5.29121 0.49417 1.09715 1.47226 1.48843 1.56786 1.86082 2.24226 2.34773 2.52740 3.28092 3.36762 3.65019 3.71087 3.80699 3.90360 3.97536 4.06314 4.17620 4.24599 4.39845 4.44543 4.46154 4.53746 4.60830 4.64156 4.69691 4.72825 4.79562 4.85664 4.94924 4.95773 4.98309 4.99326 5.03775 5.18503 5.24097 5.26000 5.28552 5.32108 5.33042 5.35829 5.44571 5.48240 5.49881 5.59472 5.68994 5.81602 6.08889 6.41142 6.45601 6.85461 7.14604 7.17308 7.89750 8.41140 9.20678 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019510 B = 0.002176 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.848344 B =12866.177969 C =13724.905196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.046 4.046 4 C 0.037 3.963 5 C -0.197 4.197 6 C -0.037 4.037 7 C 0.600 3.400 8 O -0.569 6.569 9 N -0.704 5.704 10 C 0.155 3.845 11 H 0.083 0.917 12 C -0.157 4.157 13 C -0.075 4.075 14 C -0.115 4.115 15 C 0.140 3.860 16 N -0.609 5.609 17 C -0.259 4.259 18 H 0.067 0.933 19 C -0.052 4.052 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.270 1.270 25 C 0.177 3.823 26 C -0.121 4.121 27 N -0.271 5.271 28 N -0.364 5.364 29 H 0.460 0.540 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.163 0.837 38 H 0.409 0.591 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.011 0.989 47 H 0.249 0.751 48 H -0.007 1.007 49 H 0.053 0.947 50 H 0.059 0.941 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.288 -3.126 5.885 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.090 4.090 5 C -0.225 4.225 6 C -0.196 4.196 7 C 0.386 3.614 8 O -0.447 6.447 9 N -0.355 5.355 10 C 0.051 3.949 11 H 0.101 0.899 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.154 4.154 15 C 0.015 3.985 16 N -0.333 5.333 17 C -0.390 4.390 18 H 0.084 0.916 19 C -0.248 4.248 20 N -0.582 5.582 21 Si 0.793 3.207 22 H -0.212 1.212 23 H -0.223 1.223 24 H -0.195 1.195 25 C 0.052 3.948 26 C -0.160 4.160 27 N -0.109 5.109 28 N -0.080 5.080 29 H 0.308 0.692 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.181 0.819 38 H 0.247 0.753 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.029 0.971 47 H 0.058 0.942 48 H 0.011 0.989 49 H 0.071 0.929 50 H 0.078 0.922 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -26.572 -3.091 5.673 27.346 hybrid contribution 0.510 -0.245 -0.969 1.122 sum -26.062 -3.335 4.703 26.692 Atomic orbital electron populations 1.21763 0.94227 1.02210 1.02656 1.21516 0.96797 0.95176 1.02308 1.20375 0.83531 0.98754 1.05848 1.21831 0.96355 1.04580 0.86202 1.21672 0.90022 1.09942 1.00861 1.21857 0.95280 1.11952 0.90532 1.17178 0.82438 0.75642 0.86160 1.90742 1.87389 1.52088 1.14436 1.46069 1.04956 1.72779 1.11692 1.20978 0.82306 0.97024 0.94598 0.89901 1.22179 1.01874 0.95325 1.02126 1.21182 0.94125 0.98939 0.95202 1.21939 0.93875 1.01569 0.97996 1.21058 0.97336 0.94203 0.85943 1.44334 1.05516 1.69954 1.13455 1.19526 0.94864 1.33418 0.91157 0.91569 1.25752 1.01050 1.00350 0.97608 1.70193 1.44478 1.40463 1.03032 0.85321 0.79429 0.78618 0.77305 1.21153 1.22315 1.19475 1.20664 0.85069 0.95682 0.93429 1.22135 0.98119 0.99724 0.95976 1.73532 1.03228 1.19543 1.14562 1.43427 1.02091 1.51552 1.10971 0.69197 0.91750 0.92592 0.91998 0.92141 0.92291 0.87928 0.88131 0.81927 0.75341 0.92318 0.90299 0.93136 0.91849 0.91441 0.90081 0.92684 0.97140 0.94214 0.98874 0.92900 0.92195 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 71.98 0.71 -0.08 16 2 C -0.12 -0.88 5.92 30.59 0.18 -0.70 16 3 C -0.05 -0.31 5.77 29.85 0.17 -0.14 16 4 C 0.04 0.53 6.48 41.40 0.27 0.80 16 5 C -0.20 -4.17 10.73 22.41 0.24 -3.93 16 6 C -0.04 -0.96 7.13 42.45 0.30 -0.66 16 7 C 0.60 18.39 7.79 86.74 0.68 19.06 16 8 O -0.57 -20.25 16.59 -3.94 -0.07 -20.32 16 9 N -0.70 -20.18 5.00 -445.54 -2.23 -22.40 16 10 C 0.15 4.48 2.40 44.99 0.11 4.59 16 11 H 0.08 2.48 7.58 -2.39 -0.02 2.46 16 12 C -0.16 -4.34 8.78 71.98 0.63 -3.71 16 13 C -0.08 -2.41 2.14 -10.77 -0.02 -2.44 16 14 C -0.11 -3.73 4.97 30.67 0.15 -3.58 16 15 C 0.14 5.79 6.51 86.36 0.56 6.35 16 16 N -0.61 -30.65 2.99 -698.26 -2.09 -32.74 16 17 C -0.26 -14.36 9.59 84.03 0.81 -13.55 16 18 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 19 C -0.05 -2.95 4.89 84.86 0.42 -2.54 16 20 N -0.94 -55.83 11.21 21.65 0.24 -55.59 16 21 Si 0.96 45.29 29.59 68.60 2.03 47.32 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 C 0.18 8.56 5.35 86.51 0.46 9.02 16 26 C -0.12 -4.41 4.83 30.82 0.15 -4.26 16 27 N -0.27 -6.26 11.92 -48.18 -0.57 -6.83 16 28 N -0.36 -5.45 6.83 -47.93 -0.33 -5.77 16 29 H 0.46 3.38 8.96 -219.99 -1.97 1.41 16 30 H 0.06 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 38 H 0.41 11.32 6.57 -92.71 -0.61 10.71 16 39 H 0.06 1.66 6.46 -2.39 -0.02 1.65 16 40 H 0.08 2.04 6.46 -2.39 -0.02 2.03 16 41 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.07 2.20 6.51 -2.39 -0.02 2.18 16 44 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.05 2.22 7.93 -2.39 -0.02 2.21 16 46 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16 48 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 49 H 0.05 2.90 6.03 -2.38 -0.01 2.89 16 50 H 0.06 2.24 6.51 -2.39 -0.02 2.22 16 51 H 0.06 2.02 6.46 -2.39 -0.02 2.00 16 Total: -1.00 -71.93 400.06 1.17 -70.76 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -1.64 Total: 21.35 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 5.82 Total: 4.23 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -4.97 Total: -123.34 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.07 Total: -20.32 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.93 1.17 -70.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997697578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.765 kcal (2) G-P(sol) polarization free energy of solvation -71.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds