Wall clock time and date at job start Tue Mar 31 2020 18:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50711 * 109.46736 * 2 1 4 4 C 1.35359 * 126.38128 * 274.97742 * 3 2 1 5 5 C 1.41508 * 105.50062 * 180.02562 * 4 3 2 6 6 C 1.47707 * 126.51820 * 179.97438 * 5 4 3 7 7 O 1.21568 * 120.00115 * 353.89126 * 6 5 4 8 8 N 1.34778 * 119.99856 * 173.88664 * 6 5 4 9 9 C 1.46499 * 120.00014 * 3.99218 * 8 6 5 10 10 C 1.52994 * 109.47315 * 83.50788 * 9 8 6 11 11 C 1.46498 * 119.99902 * 183.99498 * 8 6 5 12 12 H 1.09002 * 108.44761 * 179.97438 * 11 8 6 13 13 C 1.52568 * 108.51486 * 62.31339 * 11 8 6 14 14 C 1.51029 * 109.27831 * 153.60564 * 13 11 8 15 15 C 1.53955 * 109.97192 * 92.06272 * 14 13 11 16 16 N 1.47597 * 112.13947 * 319.41764 * 15 14 13 17 17 C 1.36939 * 118.64259 * 137.89220 * 16 15 14 18 18 H 1.08006 * 119.99772 * 210.30047 * 17 16 15 19 19 C 1.38811 * 120.00128 * 30.29777 * 17 16 15 20 20 N 1.31622 * 119.99830 * 10.16271 * 19 17 16 21 21 Si 1.86801 * 120.00014 * 190.15553 * 19 17 16 22 22 H 1.48506 * 109.46819 * 60.00564 * 21 19 17 23 23 H 1.48500 * 109.46994 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47386 * 300.00453 * 21 19 17 25 25 C 1.44580 * 122.71561 * 317.86725 * 16 15 14 26 26 C 1.47093 * 108.51336 * 297.68683 * 11 8 6 27 27 N 1.31811 * 106.96257 * 0.02562 * 5 4 3 28 28 N 1.28471 * 110.07116 * 359.97438 * 27 5 4 29 29 H 0.97000 * 124.87902 * 180.26046 * 28 27 5 30 30 H 1.09005 * 109.46774 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47301 * 299.99627 * 1 2 3 32 32 H 1.08994 * 109.47540 * 59.99894 * 1 2 3 33 33 H 1.09000 * 109.47301 * 240.00373 * 2 1 3 34 34 H 1.09000 * 109.47664 * 119.99655 * 2 1 3 35 35 H 1.07993 * 127.25259 * 359.96006 * 4 3 2 36 36 H 1.09004 * 109.47506 * 203.50979 * 9 8 6 37 37 H 1.09006 * 109.47249 * 323.50971 * 9 8 6 38 38 H 1.08996 * 109.47629 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.47346 * 300.00318 * 10 9 8 40 40 H 1.09006 * 109.46813 * 59.99916 * 10 9 8 41 41 H 1.09003 * 109.48494 * 273.70026 * 13 11 8 42 42 H 1.09000 * 109.49366 * 33.76340 * 13 11 8 43 43 H 1.09001 * 109.44811 * 331.90193 * 14 13 11 44 44 H 1.09003 * 109.31333 * 212.14092 * 14 13 11 45 45 H 1.08995 * 108.94723 * 198.73212 * 15 14 13 46 46 H 1.09005 * 108.87700 * 80.05586 * 15 14 13 47 47 H 0.96991 * 119.99559 * 179.97438 * 20 19 17 48 48 H 1.08995 * 109.44836 * 330.68902 * 25 16 15 49 49 H 1.09003 * 109.44823 * 210.76831 * 25 16 15 50 50 H 1.09003 * 109.32451 * 304.32139 * 26 11 8 51 51 H 1.09001 * 109.32737 * 63.96704 * 26 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4210 0.0000 4 6 2.2107 2.2095 -1.0856 5 6 2.6932 3.4412 -0.5832 6 6 3.0435 4.6372 -1.3761 7 8 3.0326 4.5859 -2.5907 8 7 3.3751 5.7854 -0.7531 9 6 3.4733 5.8239 0.7081 10 6 4.8535 5.3246 1.1399 11 6 3.6373 6.9949 -1.5370 12 1 3.8855 7.8040 -0.8502 13 6 2.3635 7.3712 -2.2878 14 6 2.3620 8.8580 -2.5532 15 6 2.9911 9.1473 -3.9282 16 7 4.1745 8.3041 -4.1870 17 6 4.3307 7.7566 -5.4324 18 1 4.8380 6.8099 -5.5464 19 6 3.8369 8.4181 -6.5484 20 7 3.3999 9.6550 -6.4403 21 14 3.7928 7.5532 -8.2035 22 1 2.9465 6.3369 -8.1039 23 1 3.2256 8.4690 -9.2256 24 1 5.1714 7.1661 -8.5967 25 6 5.1759 8.0327 -3.1801 26 6 4.7982 6.7461 -2.4054 27 7 2.7715 3.3180 0.7268 28 7 2.3890 2.1444 1.0829 29 1 2.3574 1.8253 1.9983 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0251 1.9523 -2.1180 36 1 3.3325 6.8477 1.0549 37 1 2.7039 5.1846 1.1410 38 1 4.9269 5.3536 2.2270 39 1 4.9944 4.3009 0.7931 40 1 5.6230 5.9639 0.7069 41 1 2.3255 6.8302 -3.2333 42 1 1.4946 7.1098 -1.6838 43 1 2.9370 9.3655 -1.7787 44 1 1.3358 9.2253 -2.5407 45 1 3.2877 10.1954 -3.9682 46 1 2.2471 8.9606 -4.7028 47 1 3.0552 10.1173 -7.2202 48 1 5.2296 8.8715 -2.4863 49 1 6.1452 7.8962 -3.6598 50 1 5.6444 6.4310 -1.7949 51 1 4.5537 5.9578 -3.1174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997925330.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:52 Heat of formation + Delta-G solvation = 68.871720 kcal Electronic energy + Delta-G solvation = -30586.723938 eV Core-core repulsion = 26716.808463 eV Total energy + Delta-G solvation = -3869.915476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.82546 -39.88622 -37.15921 -35.59845 -34.59119 -33.23644 -31.85245 -31.44187 -30.74358 -29.57433 -29.11960 -25.93679 -24.67271 -24.11114 -23.78887 -23.02297 -22.27274 -21.19979 -20.22838 -19.08464 -18.31525 -17.94383 -16.57182 -16.48289 -15.87840 -15.62372 -14.90870 -14.79301 -14.51052 -14.16700 -13.98095 -13.73183 -13.59823 -13.48654 -13.40114 -13.20420 -12.92028 -12.76738 -12.41010 -12.06873 -11.97351 -11.91524 -11.82010 -11.56765 -11.23844 -11.12305 -10.99150 -10.69264 -10.61798 -10.49973 -10.34721 -10.08273 -9.98905 -9.59803 -9.52593 -9.46751 -9.37291 -9.19765 -9.07599 -8.27486 -8.20454 -6.41582 -5.60184 -3.07348 1.58263 2.03787 2.67503 3.30886 3.51543 3.55036 3.59409 3.65073 4.24382 4.40459 4.55163 4.66103 4.85531 4.98041 5.12948 5.18725 5.31049 5.41422 5.44021 5.50235 5.54355 5.55629 5.60066 5.67918 5.76312 5.77765 5.81530 5.85904 5.95508 6.02768 6.20312 6.20793 6.26112 6.34343 6.40317 6.52295 6.62768 6.72080 6.81405 6.82609 6.95932 7.02680 7.08160 7.23946 7.37996 7.62837 7.72250 7.86287 7.88982 8.01461 8.58164 8.68721 9.43821 10.09219 10.55428 11.47076 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.003345 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.471626 B = 8369.511012 C = 9547.747667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C 0.013 3.987 4 C -0.176 4.176 5 C 0.001 3.999 6 C 0.592 3.408 7 O -0.510 6.510 8 N -0.602 5.602 9 C 0.101 3.899 10 C -0.157 4.157 11 C 0.175 3.825 12 H 0.067 0.933 13 C -0.112 4.112 14 C -0.141 4.141 15 C 0.180 3.820 16 N -0.587 5.587 17 C -0.248 4.248 18 H 0.062 0.938 19 C 0.004 3.996 20 N -0.910 5.910 21 Si 0.901 3.099 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.284 1.284 25 C 0.166 3.834 26 C -0.167 4.167 27 N -0.257 5.257 28 N -0.389 5.389 29 H 0.440 0.560 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.161 0.839 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.052 0.948 45 H 0.024 0.976 46 H 0.072 0.928 47 H 0.251 0.749 48 H 0.029 0.971 49 H 0.047 0.953 50 H 0.043 0.957 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.947 -15.968 20.539 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.113 4.113 4 C -0.204 4.204 5 C -0.160 4.160 6 C 0.377 3.623 7 O -0.382 6.382 8 N -0.336 5.336 9 C -0.023 4.023 10 C -0.215 4.215 11 C 0.074 3.926 12 H 0.085 0.915 13 C -0.151 4.151 14 C -0.180 4.180 15 C 0.055 3.945 16 N -0.308 5.308 17 C -0.378 4.378 18 H 0.080 0.920 19 C -0.194 4.194 20 N -0.555 5.555 21 Si 0.731 3.269 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.210 1.210 25 C 0.037 3.963 26 C -0.208 4.208 27 N -0.092 5.092 28 N -0.102 5.102 29 H 0.284 0.716 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.090 0.910 47 H 0.061 0.939 48 H 0.047 0.953 49 H 0.065 0.935 50 H 0.061 0.939 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.716 -15.215 20.651 25.919 hybrid contribution -0.271 -1.038 -0.840 1.362 sum -3.987 -16.253 19.812 25.934 Atomic orbital electron populations 1.21785 0.94051 1.02190 1.02719 1.20108 0.96418 0.88834 1.03872 1.21400 1.05659 0.96781 0.87447 1.21536 1.06639 0.92387 0.99813 1.22202 1.07036 0.97056 0.89712 1.16971 0.77709 0.81151 0.86464 1.90858 1.51811 1.83117 1.12449 1.48354 1.68076 1.10133 1.06991 1.21804 0.98666 1.01769 0.80016 1.22069 0.97310 1.01643 1.00525 1.20105 0.96188 0.83801 0.92485 0.91480 1.21340 0.94619 0.97347 1.01776 1.22054 0.99931 0.95056 1.00998 1.20995 0.89041 0.92992 0.91443 1.43575 1.20509 1.58191 1.08552 1.19159 1.34606 1.00801 0.83219 0.92024 1.25103 1.01459 0.95117 0.97696 1.70023 1.46630 1.09903 1.28935 0.86390 0.77866 0.78750 0.83883 1.20979 1.21823 1.21008 1.20558 0.92413 0.92518 0.90857 1.22009 0.95462 1.03599 0.99701 1.73777 1.18730 1.01632 1.15095 1.43451 1.48070 1.09069 1.09608 0.71601 0.91808 0.92777 0.91744 0.89052 0.90808 0.82162 0.91160 0.88578 0.92338 0.92600 0.92886 0.89143 0.94052 0.93873 0.92937 0.95826 0.90950 0.93857 0.95314 0.93470 0.93855 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.44 16 2 C -0.05 -0.30 6.49 -27.88 -0.18 -0.48 16 3 C 0.01 0.12 6.48 -82.21 -0.53 -0.42 16 4 C -0.18 -2.23 10.73 -39.36 -0.42 -2.66 16 5 C 0.00 0.01 6.65 -82.76 -0.55 -0.54 16 6 C 0.59 10.57 7.01 -12.39 -0.09 10.48 16 7 O -0.51 -11.10 13.81 5.31 0.07 -11.03 16 8 N -0.60 -9.73 2.27 -170.79 -0.39 -10.12 16 9 C 0.10 1.27 5.69 -4.05 -0.02 1.24 16 10 C -0.16 -1.80 9.74 37.15 0.36 -1.44 16 11 C 0.18 3.16 1.95 -70.99 -0.14 3.02 16 12 H 0.07 1.12 6.85 -51.93 -0.36 0.76 16 13 C -0.11 -2.24 4.26 -27.94 -0.12 -2.36 16 14 C -0.14 -2.82 5.72 -27.22 -0.16 -2.97 16 15 C 0.18 4.49 4.63 -2.94 -0.01 4.48 16 16 N -0.59 -15.25 2.26 -172.09 -0.39 -15.64 16 17 C -0.25 -7.13 9.42 -15.06 -0.14 -7.27 16 18 H 0.06 1.80 7.85 -52.48 -0.41 1.38 16 19 C 0.00 0.12 4.99 -17.43 -0.09 0.03 16 20 N -0.91 -27.25 10.94 55.49 0.61 -26.65 16 21 Si 0.90 22.96 29.57 -169.99 -5.03 17.94 16 22 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.17 3.67 5.65 -4.09 -0.02 3.65 16 26 C -0.17 -3.35 4.86 -28.59 -0.14 -3.49 16 27 N -0.26 -3.00 7.55 33.42 0.25 -2.74 16 28 N -0.39 -3.27 6.83 33.50 0.23 -3.04 16 29 H 0.44 2.00 8.96 -190.44 -1.71 0.29 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.07 0.80 7.76 -51.93 -0.40 0.40 16 37 H 0.10 1.17 5.36 -51.93 -0.28 0.89 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.71 7.06 -51.93 -0.37 0.34 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 2.19 6.71 -51.93 -0.35 1.84 16 42 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 43 H 0.04 0.79 7.31 -51.93 -0.38 0.41 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.02 0.63 7.99 -51.93 -0.41 0.21 16 46 H 0.07 2.02 6.46 -51.93 -0.34 1.69 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 49 H 0.05 1.07 7.99 -51.93 -0.41 0.65 16 50 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.09 2.11 6.08 -51.93 -0.32 1.79 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -33.93 390.88 -10.57 -44.50 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -9.93 Total: 0.04 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.88 Total: 0.85 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.31 Total: -58.19 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.03 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.03 Total: 17.94 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.93 -10.57 -44.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997925330.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.370 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds