Wall clock time and date at job start Tue Mar 31 2020 18:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50711 * 109.46736 * 2 1 4 4 C 1.35359 * 126.38128 * 274.97742 * 3 2 1 5 5 C 1.41508 * 105.50062 * 180.02562 * 4 3 2 6 6 C 1.47707 * 126.51820 * 179.97438 * 5 4 3 7 7 O 1.21568 * 120.00115 * 353.89126 * 6 5 4 8 8 N 1.34778 * 119.99856 * 173.88664 * 6 5 4 9 9 C 1.46499 * 120.00014 * 3.99218 * 8 6 5 10 10 C 1.52994 * 109.47315 * 83.50788 * 9 8 6 11 11 C 1.46498 * 119.99902 * 183.99498 * 8 6 5 12 12 H 1.09002 * 108.44761 * 179.97438 * 11 8 6 13 13 C 1.52568 * 108.51486 * 62.31339 * 11 8 6 14 14 C 1.51029 * 109.27831 * 153.60564 * 13 11 8 15 15 C 1.53955 * 109.97192 * 92.06272 * 14 13 11 16 16 N 1.47597 * 112.13947 * 319.41764 * 15 14 13 17 17 C 1.36939 * 118.64259 * 137.89220 * 16 15 14 18 18 H 1.08006 * 119.99772 * 210.30047 * 17 16 15 19 19 C 1.38811 * 120.00128 * 30.29777 * 17 16 15 20 20 N 1.31622 * 119.99830 * 10.16271 * 19 17 16 21 21 Si 1.86801 * 120.00014 * 190.15553 * 19 17 16 22 22 H 1.48506 * 109.46819 * 60.00564 * 21 19 17 23 23 H 1.48500 * 109.46994 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47386 * 300.00453 * 21 19 17 25 25 C 1.44580 * 122.71561 * 317.86725 * 16 15 14 26 26 C 1.47093 * 108.51336 * 297.68683 * 11 8 6 27 27 N 1.31811 * 106.96257 * 0.02562 * 5 4 3 28 28 N 1.28471 * 110.07116 * 359.97438 * 27 5 4 29 29 H 0.97000 * 124.87902 * 180.26046 * 28 27 5 30 30 H 1.09005 * 109.46774 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47301 * 299.99627 * 1 2 3 32 32 H 1.08994 * 109.47540 * 59.99894 * 1 2 3 33 33 H 1.09000 * 109.47301 * 240.00373 * 2 1 3 34 34 H 1.09000 * 109.47664 * 119.99655 * 2 1 3 35 35 H 1.07993 * 127.25259 * 359.96006 * 4 3 2 36 36 H 1.09004 * 109.47506 * 203.50979 * 9 8 6 37 37 H 1.09006 * 109.47249 * 323.50971 * 9 8 6 38 38 H 1.08996 * 109.47629 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.47346 * 300.00318 * 10 9 8 40 40 H 1.09006 * 109.46813 * 59.99916 * 10 9 8 41 41 H 1.09003 * 109.48494 * 273.70026 * 13 11 8 42 42 H 1.09000 * 109.49366 * 33.76340 * 13 11 8 43 43 H 1.09001 * 109.44811 * 331.90193 * 14 13 11 44 44 H 1.09003 * 109.31333 * 212.14092 * 14 13 11 45 45 H 1.08995 * 108.94723 * 198.73212 * 15 14 13 46 46 H 1.09005 * 108.87700 * 80.05586 * 15 14 13 47 47 H 0.96991 * 119.99559 * 179.97438 * 20 19 17 48 48 H 1.08995 * 109.44836 * 330.68902 * 25 16 15 49 49 H 1.09003 * 109.44823 * 210.76831 * 25 16 15 50 50 H 1.09003 * 109.32451 * 304.32139 * 26 11 8 51 51 H 1.09001 * 109.32737 * 63.96704 * 26 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4210 0.0000 4 6 2.2107 2.2095 -1.0856 5 6 2.6932 3.4412 -0.5832 6 6 3.0435 4.6372 -1.3761 7 8 3.0326 4.5859 -2.5907 8 7 3.3751 5.7854 -0.7531 9 6 3.4733 5.8239 0.7081 10 6 4.8535 5.3246 1.1399 11 6 3.6373 6.9949 -1.5370 12 1 3.8855 7.8040 -0.8502 13 6 2.3635 7.3712 -2.2878 14 6 2.3620 8.8580 -2.5532 15 6 2.9911 9.1473 -3.9282 16 7 4.1745 8.3041 -4.1870 17 6 4.3307 7.7566 -5.4324 18 1 4.8380 6.8099 -5.5464 19 6 3.8369 8.4181 -6.5484 20 7 3.3999 9.6550 -6.4403 21 14 3.7928 7.5532 -8.2035 22 1 2.9465 6.3369 -8.1039 23 1 3.2256 8.4690 -9.2256 24 1 5.1714 7.1661 -8.5967 25 6 5.1759 8.0327 -3.1801 26 6 4.7982 6.7461 -2.4054 27 7 2.7715 3.3180 0.7268 28 7 2.3890 2.1444 1.0829 29 1 2.3574 1.8253 1.9983 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0251 1.9523 -2.1180 36 1 3.3325 6.8477 1.0549 37 1 2.7039 5.1846 1.1410 38 1 4.9269 5.3536 2.2270 39 1 4.9944 4.3009 0.7931 40 1 5.6230 5.9639 0.7069 41 1 2.3255 6.8302 -3.2333 42 1 1.4946 7.1098 -1.6838 43 1 2.9370 9.3655 -1.7787 44 1 1.3358 9.2253 -2.5407 45 1 3.2877 10.1954 -3.9682 46 1 2.2471 8.9606 -4.7028 47 1 3.0552 10.1173 -7.2202 48 1 5.2296 8.8715 -2.4863 49 1 6.1452 7.8962 -3.6598 50 1 5.6444 6.4310 -1.7949 51 1 4.5537 5.9578 -3.1174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997925330.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:42 Heat of formation + Delta-G solvation = 48.354603 kcal Electronic energy + Delta-G solvation = -30587.613627 eV Core-core repulsion = 26716.808463 eV Total energy + Delta-G solvation = -3870.805165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 4.95 seconds Orbital eigenvalues (eV) -43.71397 -41.28175 -38.86454 -37.01957 -35.35728 -34.82268 -33.29564 -32.98543 -32.30971 -30.59073 -30.22682 -27.84676 -26.19119 -25.44688 -24.72929 -24.53728 -23.44246 -22.02129 -21.72107 -21.00037 -19.55514 -18.80462 -18.51241 -17.68224 -17.13686 -16.84451 -16.79322 -15.81537 -15.75606 -15.39771 -15.31972 -15.26445 -14.99075 -14.89691 -14.51927 -14.40952 -14.22525 -14.03577 -13.64598 -13.43836 -13.30979 -13.11630 -12.95562 -12.79263 -12.71858 -12.49567 -12.37003 -12.29990 -12.03798 -12.02712 -11.92589 -11.82982 -11.62744 -11.43456 -11.33996 -11.14230 -10.68722 -10.44642 -10.36568 -9.90974 -9.57488 -8.54373 -7.82348 -5.32078 0.56561 1.12177 1.42315 1.45822 1.52658 1.84186 2.20880 2.40999 2.52312 3.28632 3.32065 3.68559 3.71277 3.80867 4.00837 4.14648 4.15058 4.30639 4.37329 4.41993 4.48847 4.50572 4.54371 4.55654 4.61337 4.70158 4.73932 4.80091 4.82480 4.90227 5.00964 5.06288 5.07478 5.09479 5.13985 5.18289 5.20960 5.28283 5.32222 5.38819 5.45810 5.46978 5.57058 5.63631 5.72786 5.81071 5.87070 6.15406 6.46724 6.53021 6.88325 7.23441 7.28299 8.00408 8.37736 9.21590 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.003345 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.471626 B = 8369.511012 C = 9547.747667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C 0.040 3.960 4 C -0.210 4.210 5 C -0.031 4.031 6 C 0.585 3.415 7 O -0.565 6.565 8 N -0.599 5.599 9 C 0.097 3.903 10 C -0.149 4.149 11 C 0.176 3.824 12 H 0.097 0.903 13 C -0.101 4.101 14 C -0.127 4.127 15 C 0.190 3.810 16 N -0.601 5.601 17 C -0.258 4.258 18 H 0.048 0.952 19 C -0.045 4.045 20 N -0.933 5.933 21 Si 0.960 3.040 22 H -0.287 1.287 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.162 3.838 26 C -0.148 4.148 27 N -0.247 5.247 28 N -0.365 5.365 29 H 0.461 0.539 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.147 0.853 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.039 0.961 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.002 0.998 46 H 0.032 0.968 47 H 0.249 0.751 48 H 0.053 0.947 49 H 0.036 0.964 50 H 0.063 0.937 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 -17.414 24.310 30.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.090 4.090 3 C -0.087 4.087 4 C -0.238 4.238 5 C -0.190 4.190 6 C 0.372 3.628 7 O -0.442 6.442 8 N -0.330 5.330 9 C -0.025 4.025 10 C -0.208 4.208 11 C 0.075 3.925 12 H 0.115 0.885 13 C -0.140 4.140 14 C -0.166 4.166 15 C 0.065 3.935 16 N -0.323 5.323 17 C -0.389 4.389 18 H 0.066 0.934 19 C -0.240 4.240 20 N -0.580 5.580 21 Si 0.788 3.212 22 H -0.214 1.214 23 H -0.213 1.213 24 H -0.201 1.201 25 C 0.035 3.965 26 C -0.189 4.189 27 N -0.084 5.084 28 N -0.082 5.082 29 H 0.310 0.690 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.165 0.835 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.020 0.980 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.071 0.929 49 H 0.054 0.946 50 H 0.081 0.919 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.834 -16.671 24.507 29.887 hybrid contribution -0.234 -0.694 -1.905 2.041 sum -4.068 -17.366 22.602 28.792 Atomic orbital electron populations 1.21776 0.93724 1.03175 1.01962 1.20281 0.96494 0.86497 1.05695 1.21733 1.03110 0.97653 0.86166 1.21615 1.08673 0.92959 1.00572 1.21794 1.09771 0.96615 0.90780 1.17466 0.76857 0.82356 0.86143 1.90832 1.54237 1.84221 1.14940 1.48365 1.67267 1.08948 1.08470 1.22075 0.99624 1.03356 0.77399 1.22000 0.96175 1.00356 1.02243 1.19934 0.94269 0.85584 0.92757 0.88478 1.21165 0.96443 0.96533 0.99819 1.21897 1.00881 0.95407 0.98398 1.20767 0.87956 0.91557 0.93252 1.43747 1.21854 1.58103 1.08554 1.19305 1.34294 1.00403 0.84928 0.93435 1.25757 1.01668 0.95859 1.00731 1.70165 1.47442 1.10914 1.29440 0.85465 0.78006 0.77508 0.80217 1.21395 1.21255 1.20083 1.20697 0.91028 0.94247 0.90553 1.21738 0.97171 1.00884 0.99089 1.73659 1.18446 1.02916 1.13419 1.43539 1.45941 1.07982 1.10692 0.69006 0.89989 0.92396 0.93677 0.88658 0.87573 0.83543 0.89057 0.87908 0.89472 0.94157 0.93599 0.94191 0.92649 0.90951 0.91252 0.97979 0.94979 0.94204 0.92879 0.94572 0.91885 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 71.98 0.71 -0.52 16 2 C -0.05 -0.41 6.49 29.85 0.19 -0.22 16 3 C 0.04 0.64 6.48 41.41 0.27 0.91 16 4 C -0.21 -5.41 10.73 22.41 0.24 -5.17 16 5 C -0.03 -0.89 6.65 42.46 0.28 -0.61 16 6 C 0.58 21.47 7.01 86.75 0.61 22.07 16 7 O -0.57 -26.42 13.81 -3.93 -0.05 -26.47 16 8 N -0.60 -18.82 2.27 -812.52 -1.84 -20.66 16 9 C 0.10 2.16 5.69 86.38 0.49 2.65 16 10 C -0.15 -2.98 9.74 71.98 0.70 -2.28 16 11 C 0.18 6.20 1.95 43.01 0.08 6.29 16 12 H 0.10 2.88 6.85 -2.39 -0.02 2.87 16 13 C -0.10 -4.05 4.26 29.81 0.13 -3.92 16 14 C -0.13 -4.96 5.72 30.27 0.17 -4.79 16 15 C 0.19 9.75 4.63 86.49 0.40 10.15 16 16 N -0.60 -32.32 2.26 -698.38 -1.58 -33.90 16 17 C -0.26 -15.58 9.42 84.03 0.79 -14.79 16 18 H 0.05 2.94 7.85 -2.91 -0.02 2.92 16 19 C -0.04 -2.71 4.99 84.86 0.42 -2.28 16 20 N -0.93 -57.94 10.94 21.65 0.24 -57.70 16 21 Si 0.96 48.96 29.57 68.60 2.03 50.98 16 22 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 23 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 24 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 25 C 0.16 7.27 5.65 87.37 0.49 7.76 16 26 C -0.15 -6.00 4.86 29.39 0.14 -5.86 16 27 N -0.25 -5.27 7.55 -48.17 -0.36 -5.63 16 28 N -0.36 -5.05 6.83 -47.93 -0.33 -5.37 16 29 H 0.46 2.24 8.96 -219.99 -1.97 0.27 16 30 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.43 16 32 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 36 H 0.09 1.68 7.76 -2.39 -0.02 1.66 16 37 H 0.10 2.19 5.36 -2.38 -0.01 2.18 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.04 0.93 7.06 -2.39 -0.02 0.92 16 40 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.04 2.03 6.71 -2.39 -0.02 2.01 16 42 H 0.05 2.04 8.05 -2.39 -0.02 2.02 16 43 H 0.07 2.44 7.31 -2.39 -0.02 2.42 16 44 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.00 0.12 7.99 -2.39 -0.02 0.10 16 46 H 0.03 1.87 6.46 -2.38 -0.02 1.86 16 47 H 0.25 14.96 8.31 -92.72 -0.77 14.19 16 48 H 0.05 2.11 8.06 -2.39 -0.02 2.09 16 49 H 0.04 1.67 7.99 -2.39 -0.02 1.65 16 50 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.05 2.38 6.08 -2.39 -0.01 2.36 16 Total: -1.00 -80.19 390.88 3.19 -77.01 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -1.05 Total: 12.36 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 6.14 Total: 9.40 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -3.87 Total: -123.27 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.05 Total: -26.47 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.03 Total: 50.98 kcal Total: -80.19 3.19 -77.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997925330.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.361 kcal (2) G-P(sol) polarization free energy of solvation -80.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.95 seconds