Wall clock time and date at job start Tue Mar 31 2020 18:37:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50703 * 109.46948 * 2 1
4 4 N 1.33321 * 126.10600 * 84.39770 * 3 2 1
5 5 C 1.30858 * 109.68499 * 180.02562 * 4 3 2
6 6 N 1.34502 * 109.15961 * 359.97438 * 5 4 3
7 7 H 0.96999 * 126.46701 * 180.02562 * 6 5 4
8 8 C 1.36665 * 126.10597 * 264.70945 * 3 2 1
9 9 C 1.46757 * 126.84536 * 0.03318 * 8 3 2
10 10 O 1.21685 * 120.00519 * 266.91341 * 9 8 3
11 11 N 1.34786 * 120.00033 * 86.91187 * 9 8 3
12 12 C 1.46496 * 119.99530 * 354.20137 * 11 9 8
13 13 C 1.52996 * 109.47699 * 94.15835 * 12 11 9
14 14 C 1.46502 * 119.99915 * 174.19172 * 11 9 8
15 15 H 1.09005 * 108.44324 * 180.02562 * 14 11 9
16 16 C 1.52564 * 108.51003 * 62.31774 * 14 11 9
17 17 C 1.51036 * 109.27886 * 153.60124 * 16 14 11
18 18 C 1.53948 * 109.96854 * 92.06201 * 17 16 14
19 19 N 1.47605 * 112.14292 * 319.42338 * 18 17 16
20 20 C 1.36937 * 118.64378 * 137.89402 * 19 18 17
21 21 H 1.07998 * 119.99557 * 212.47468 * 20 19 18
22 22 C 1.38810 * 120.00148 * 32.46812 * 20 19 18
23 23 N 1.31615 * 119.99956 * 7.88525 * 22 20 19
24 24 Si 1.86794 * 119.99933 * 187.88217 * 22 20 19
25 25 H 1.48499 * 109.47211 * 60.00199 * 24 22 20
26 26 H 1.48509 * 109.47306 * 180.02562 * 24 22 20
27 27 H 1.48495 * 109.47251 * 300.00213 * 24 22 20
28 28 C 1.44575 * 122.71239 * 317.86241 * 19 18 17
29 29 C 1.47084 * 108.51622 * 297.69348 * 14 11 9
30 30 H 1.08997 * 109.47210 * 186.76545 * 1 2 3
31 31 H 1.09003 * 109.46984 * 306.76890 * 1 2 3
32 32 H 1.08997 * 109.47135 * 66.76370 * 1 2 3
33 33 H 1.08997 * 109.47217 * 240.00156 * 2 1 3
34 34 H 1.08999 * 109.46713 * 119.99905 * 2 1 3
35 35 H 1.07994 * 125.41827 * 179.97438 * 5 4 3
36 36 H 1.09005 * 109.46574 * 214.15824 * 12 11 9
37 37 H 1.08997 * 109.47552 * 334.14992 * 12 11 9
38 38 H 1.08994 * 109.47727 * 179.97438 * 13 12 11
39 39 H 1.09001 * 109.47001 * 300.00163 * 13 12 11
40 40 H 1.09008 * 109.47120 * 59.99419 * 13 12 11
41 41 H 1.09001 * 109.48921 * 273.69832 * 16 14 11
42 42 H 1.09007 * 109.49420 * 33.76036 * 16 14 11
43 43 H 1.09003 * 109.43869 * 331.90297 * 17 16 14
44 44 H 1.08996 * 109.31235 * 212.14191 * 17 16 14
45 45 H 1.09003 * 108.94581 * 198.73240 * 18 17 16
46 46 H 1.09003 * 108.94543 * 80.10363 * 18 17 16
47 47 H 0.97007 * 120.00096 * 179.97438 * 23 22 20
48 48 H 1.09000 * 109.45125 * 330.69282 * 28 19 18
49 49 H 1.08993 * 109.43098 * 210.76016 * 28 19 18
50 50 H 1.09007 * 109.33094 * 304.31843 * 29 14 11
51 51 H 1.09000 * 109.33079 * 63.79232 * 29 14 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.1951 2.1966 1.0720
5 6 2.6470 3.3682 0.7038
6 7 2.7922 3.3850 -0.6333
7 1 3.1107 4.1281 -1.1693
8 6 2.3968 2.1462 -1.0994
9 6 2.3747 1.6976 -2.4966
10 8 3.3728 1.2126 -2.9958
11 7 1.2488 1.8229 -3.2269
12 6 0.0126 2.2877 -2.5930
13 6 -0.1155 3.8015 -2.7738
14 6 1.2614 1.4945 -4.6546
15 1 0.2620 1.6624 -5.0560
16 6 1.6035 0.0157 -4.8084
17 6 1.0148 -0.5007 -6.0999
18 6 2.0462 -0.3738 -7.2357
19 7 2.7971 0.8951 -7.1661
20 6 4.1465 0.8729 -7.3978
21 1 4.7940 1.5683 -6.8844
22 6 4.6821 -0.0433 -8.2926
23 7 3.8845 -0.7839 -9.0326
24 14 6.5348 -0.2250 -8.4463
25 1 7.1030 -0.6296 -7.1354
26 1 6.8479 -1.2612 -9.4631
27 1 7.1265 1.0716 -8.8633
28 6 2.1665 2.1606 -6.8640
29 6 2.1962 2.4037 -5.3348
30 1 -0.3633 -1.0205 0.1211
31 1 -0.3633 0.6152 0.8232
32 1 -0.3633 0.4054 -0.9443
33 1 1.8934 -0.5138 -0.8900
34 1 1.8933 -0.5138 0.8900
35 1 2.8681 4.1907 1.3678
36 1 -0.8413 1.7930 -3.0560
37 1 0.0376 2.0496 -1.5297
38 1 -1.0355 4.1473 -2.3026
39 1 0.7384 4.2962 -2.3109
40 1 -0.1407 4.0396 -3.8373
41 1 2.6865 -0.1073 -4.8245
42 1 1.1862 -0.5433 -3.9707
43 1 0.1269 0.0795 -6.3514
44 1 0.7394 -1.5481 -5.9771
45 1 1.5270 -0.4258 -8.1927
46 1 2.7487 -1.2047 -7.1703
47 1 4.2588 -1.4239 -9.6581
48 1 1.1325 2.1423 -7.2085
49 1 2.7033 2.9631 -7.3697
50 1 1.9111 3.4353 -5.1280
51 1 3.2053 2.2294 -4.9614
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000998190793.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:37:02
Heat of formation + Delta-G solvation = 24.614222 kcal
Electronic energy + Delta-G solvation = -31358.434460 eV
Core-core repulsion = 27486.599836 eV
Total energy + Delta-G solvation = -3871.834625 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-43.24865 -41.26576 -38.88152 -37.08613 -35.36147 -34.94264 -33.29609 -33.03239
-32.42870 -31.00020 -29.81901 -27.79279 -26.03649 -25.40626 -24.62512 -24.52998
-23.26864 -22.03098 -21.47131 -21.01998 -20.11967 -18.78438 -18.52508 -17.61654
-17.39761 -16.93163 -16.35645 -15.96635 -15.68672 -15.57814 -15.37587 -15.24433
-15.04368 -14.82727 -14.69158 -14.51354 -14.32732 -14.03086 -13.68902 -13.49510
-13.33075 -13.17919 -12.96077 -12.88575 -12.75489 -12.45075 -12.38308 -12.22201
-12.09616 -12.01614 -11.93233 -11.74768 -11.54718 -11.38400 -11.32492 -11.19153
-10.97308 -10.69685 -10.47620 -9.71509 -9.42009 -8.53413 -7.84512 -5.36977
0.74220 1.22928 1.40455 1.43592 1.49850 1.83598 2.03159 2.42438
2.49515 3.29476 3.42385 3.56675 3.72192 3.89051 4.00274 4.01970
4.11912 4.22135 4.32244 4.34418 4.42304 4.47135 4.51160 4.52198
4.54505 4.64521 4.70149 4.77093 4.85722 4.89335 4.91869 4.95976
5.05920 5.08841 5.13048 5.15542 5.18352 5.27568 5.32100 5.32897
5.42810 5.48716 5.56226 5.62060 5.72417 5.73085 5.84119 6.36169
6.40762 6.45674 6.95864 7.10653 7.22134 7.98535 8.36389 9.18851
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.015542 B = 0.003652 C = 0.003472
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1801.086221 B = 7664.928537 C = 8062.336813
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.049 4.049
3 C 0.050 3.950
4 N -0.520 5.520
5 C 0.222 3.778
6 N -0.538 5.538
7 H 0.434 0.566
8 C -0.081 4.081
9 C 0.588 3.412
10 O -0.560 6.560
11 N -0.591 5.591
12 C 0.093 3.907
13 C -0.162 4.162
14 C 0.175 3.825
15 H 0.102 0.898
16 C -0.101 4.101
17 C -0.128 4.128
18 C 0.190 3.810
19 N -0.600 5.600
20 C -0.261 4.261
21 H 0.047 0.953
22 C -0.040 4.040
23 N -0.931 5.931
24 Si 0.957 3.043
25 H -0.288 1.288
26 H -0.288 1.288
27 H -0.274 1.274
28 C 0.162 3.838
29 C -0.145 4.145
30 H 0.073 0.927
31 H 0.062 0.938
32 H 0.059 0.941
33 H 0.055 0.945
34 H 0.081 0.919
35 H 0.259 0.741
36 H 0.098 0.902
37 H 0.088 0.912
38 H 0.087 0.913
39 H 0.045 0.955
40 H 0.058 0.942
41 H 0.040 0.960
42 H 0.057 0.943
43 H 0.073 0.927
44 H 0.067 0.933
45 H 0.001 0.999
46 H 0.028 0.972
47 H 0.249 0.751
48 H 0.054 0.946
49 H 0.037 0.963
50 H 0.071 0.929
51 H 0.039 0.961
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.959 10.475 19.353 25.538
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.088 4.088
3 C -0.083 4.083
4 N -0.240 5.240
5 C -0.062 4.062
6 N -0.143 5.143
7 H 0.275 0.725
8 C -0.199 4.199
9 C 0.374 3.626
10 O -0.437 6.437
11 N -0.323 5.323
12 C -0.029 4.029
13 C -0.220 4.220
14 C 0.074 3.926
15 H 0.119 0.881
16 C -0.139 4.139
17 C -0.167 4.167
18 C 0.066 3.934
19 N -0.322 5.322
20 C -0.392 4.392
21 H 0.065 0.935
22 C -0.236 4.236
23 N -0.577 5.577
24 Si 0.785 3.215
25 H -0.215 1.215
26 H -0.213 1.213
27 H -0.200 1.200
28 C 0.034 3.966
29 C -0.186 4.186
30 H 0.092 0.908
31 H 0.081 0.919
32 H 0.078 0.922
33 H 0.073 0.927
34 H 0.100 0.900
35 H 0.274 0.726
36 H 0.116 0.884
37 H 0.106 0.894
38 H 0.105 0.895
39 H 0.064 0.936
40 H 0.078 0.922
41 H 0.059 0.941
42 H 0.075 0.925
43 H 0.091 0.909
44 H 0.086 0.914
45 H 0.019 0.981
46 H 0.046 0.954
47 H 0.058 0.942
48 H 0.072 0.928
49 H 0.055 0.945
50 H 0.089 0.911
51 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges -12.616 9.850 19.732 25.407
hybrid contribution 1.992 0.193 -1.496 2.499
sum -10.623 10.043 18.236 23.372
Atomic orbital electron populations
1.21755 0.92637 1.02974 1.02313 1.19939 0.97676 0.88861 1.02325
1.20966 1.02716 0.97421 0.87167 1.70003 1.20656 1.03110 1.30204
1.25921 0.99687 0.98532 0.82041 1.43198 1.49457 1.12155 1.09474
0.72545 1.20514 1.15107 0.89983 0.94337 1.17302 0.83180 0.78424
0.83726 1.90928 1.35807 1.44980 1.71961 1.48416 1.10051 1.64589
1.09250 1.22013 0.85610 0.96033 0.99235 1.22141 1.02567 0.94686
1.02591 1.19958 1.00388 0.93879 0.78407 0.88054 1.21172 1.00917
0.95128 0.96717 1.21906 0.98593 1.01053 0.95127 1.20747 0.91937
0.87504 0.93256 1.43718 1.04582 1.02330 1.81577 1.19255 0.84873
1.17720 1.17320 0.93527 1.25783 1.01225 1.00288 0.96306 1.70142
1.34390 1.26896 1.26254 0.85515 0.81549 0.77541 0.76855 1.21512
1.21330 1.20014 1.20699 0.96335 0.87435 0.92107 1.21699 0.99793
0.98355 0.98758 0.90846 0.91911 0.92227 0.92654 0.90048 0.72551
0.88361 0.89432 0.89462 0.93608 0.92241 0.94126 0.92455 0.90858
0.91400 0.98098 0.95378 0.94192 0.92767 0.94490 0.91088 0.94216
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.42 9.51 71.98 0.68 -1.73 16
2 C -0.05 -1.14 6.34 29.85 0.19 -0.95 16
3 C 0.05 1.24 5.76 41.97 0.24 1.48 16
4 N -0.52 -11.70 11.20 -187.58 -2.10 -13.80 16
5 C 0.22 3.35 13.01 180.33 2.35 5.70 16
6 N -0.54 -9.50 6.19 -188.05 -1.16 -10.67 16
7 H 0.43 5.62 8.96 -92.71 -0.83 4.79 16
8 C -0.08 -2.07 5.34 40.01 0.21 -1.86 16
9 C 0.59 18.57 6.43 86.47 0.56 19.12 16
10 O -0.56 -24.18 14.01 -4.30 -0.06 -24.24 16
11 N -0.59 -15.38 2.25 -813.58 -1.83 -17.21 16
12 C 0.09 1.61 5.31 86.38 0.46 2.07 16
13 C -0.16 -2.26 10.24 71.98 0.74 -1.53 16
14 C 0.18 5.39 1.96 43.01 0.08 5.47 16
15 H 0.10 2.56 6.99 -2.38 -0.02 2.55 16
16 C -0.10 -3.72 4.16 29.81 0.12 -3.60 16
17 C -0.13 -4.70 5.72 30.27 0.17 -4.52 16
18 C 0.19 9.41 4.63 86.49 0.40 9.81 16
19 N -0.60 -30.77 2.25 -698.38 -1.57 -32.35 16
20 C -0.26 -15.17 9.39 84.03 0.79 -14.38 16
21 H 0.05 2.78 7.84 -2.91 -0.02 2.75 16
22 C -0.04 -2.36 5.03 84.86 0.43 -1.94 16
23 N -0.93 -56.50 10.97 21.65 0.24 -56.26 16
24 Si 0.96 47.78 29.56 68.60 2.03 49.81 16
25 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16
26 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16
27 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16
28 C 0.16 6.70 5.66 87.37 0.49 7.19 16
29 C -0.15 -5.19 4.86 29.39 0.14 -5.04 16
30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
32 H 0.06 0.99 5.74 -2.39 -0.01 0.98 16
33 H 0.05 1.48 7.81 -2.39 -0.02 1.47 16
34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16
35 H 0.26 1.10 8.06 -2.91 -0.02 1.08 16
36 H 0.10 1.38 7.99 -2.38 -0.02 1.36 16
37 H 0.09 1.52 4.16 -2.39 -0.01 1.51 16
38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16
39 H 0.04 0.67 8.14 -2.39 -0.02 0.66 16
40 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16
41 H 0.04 1.96 6.52 -2.39 -0.02 1.94 16
42 H 0.06 1.93 8.05 -2.38 -0.02 1.91 16
43 H 0.07 2.28 7.31 -2.39 -0.02 2.27 16
44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16
45 H 0.00 0.05 7.97 -2.39 -0.02 0.03 16
46 H 0.03 1.59 6.56 -2.39 -0.02 1.58 16
47 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16
48 H 0.05 1.98 8.06 -2.39 -0.02 1.96 16
49 H 0.04 1.58 7.99 -2.39 -0.02 1.56 16
50 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16
51 H 0.04 1.78 6.41 -2.39 -0.02 1.76 16
Total: -1.00 -78.77 390.97 3.70 -75.08
By element:
Atomic # 1 Polarization: 14.26 SS G_CDS: 0.10 Total: 14.36 kcal
Atomic # 6 Polarization: 7.23 SS G_CDS: 8.06 Total: 15.29 kcal
Atomic # 7 Polarization: -123.85 SS G_CDS: -6.43 Total: -130.29 kcal
Atomic # 8 Polarization: -24.18 SS G_CDS: -0.06 Total: -24.24 kcal
Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal
Total: -78.77 3.70 -75.08 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000998190793.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.692 kcal
(2) G-P(sol) polarization free energy of solvation -78.774 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.918 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.078 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.614 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds