Wall clock time and date at job start Tue Mar 31 2020 18:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47239 * 2 1 4 4 N 1.33320 * 126.10331 * 83.60736 * 3 2 1 5 5 C 1.30861 * 109.68225 * 179.73850 * 4 3 2 6 6 N 1.34497 * 109.16074 * 359.97438 * 5 4 3 7 7 H 0.97005 * 126.46908 * 179.97438 * 6 5 4 8 8 C 1.36655 * 126.10573 * 263.29943 * 3 2 1 9 9 C 1.46770 * 126.84572 * 0.22787 * 8 3 2 10 10 O 1.21679 * 119.99970 * 258.99354 * 9 8 3 11 11 N 1.34777 * 119.99686 * 78.99206 * 9 8 3 12 12 C 1.46497 * 120.00206 * 5.61196 * 11 9 8 13 13 C 1.53003 * 109.47217 * 89.73011 * 12 11 9 14 14 C 1.46500 * 119.99463 * 185.60716 * 11 9 8 15 15 H 1.09003 * 109.20203 * 180.64253 * 14 11 9 16 16 C 1.50129 * 109.21043 * 300.00269 * 14 11 9 17 17 C 1.52531 * 105.41528 * 218.02718 * 16 14 11 18 18 C 1.46237 * 114.27872 * 270.59508 * 17 16 14 19 19 N 1.50168 * 107.53301 * 58.40650 * 18 17 16 20 20 C 1.36942 * 120.53879 * 109.61088 * 19 18 17 21 21 H 1.07998 * 119.99768 * 207.15481 * 20 19 18 22 22 C 1.38812 * 119.99728 * 27.15318 * 20 19 18 23 23 N 1.31614 * 119.99975 * 22.91085 * 22 20 19 24 24 Si 1.86800 * 119.99902 * 202.91789 * 22 20 19 25 25 H 1.48499 * 109.47263 * 94.98941 * 24 22 20 26 26 H 1.48498 * 109.47153 * 214.99312 * 24 22 20 27 27 H 1.48505 * 109.47009 * 334.98859 * 24 22 20 28 28 C 1.43436 * 118.92818 * 289.59126 * 19 18 17 29 29 C 1.54845 * 109.20788 * 61.32631 * 14 11 9 30 30 H 1.08996 * 109.46905 * 306.33002 * 1 2 3 31 31 H 1.09001 * 109.46323 * 66.33129 * 1 2 3 32 32 H 1.09000 * 109.46934 * 186.33214 * 1 2 3 33 33 H 1.08994 * 109.47740 * 239.99766 * 2 1 3 34 34 H 1.09007 * 109.46930 * 119.99446 * 2 1 3 35 35 H 1.07997 * 125.41611 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.46591 * 209.73151 * 12 11 9 37 37 H 1.08995 * 109.47074 * 329.72663 * 12 11 9 38 38 H 1.08999 * 109.46681 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.46943 * 299.99600 * 13 12 11 40 40 H 1.08995 * 109.46758 * 60.00266 * 13 12 11 41 41 H 1.09004 * 110.24765 * 336.99688 * 16 14 11 42 42 H 1.08992 * 110.25092 * 99.05697 * 16 14 11 43 43 H 1.09010 * 108.52216 * 31.83922 * 17 16 14 44 44 H 1.09003 * 108.52400 * 149.35136 * 17 16 14 45 45 H 1.09002 * 109.84685 * 177.91460 * 18 17 16 46 46 H 1.08997 * 109.84366 * 298.89880 * 18 17 16 47 47 H 0.97003 * 119.99808 * 179.97438 * 23 22 20 48 48 H 1.08991 * 108.16148 * 213.28680 * 28 19 18 49 49 H 1.09002 * 108.15548 * 330.06296 * 28 19 18 50 50 H 1.08994 * 109.35885 * 320.99234 * 29 14 11 51 51 H 1.09004 * 109.35782 * 80.58341 * 29 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1812 2.2014 1.0705 5 6 2.6437 3.3693 0.7035 6 7 2.8103 3.3786 -0.6311 7 1 3.1397 4.1178 -1.1659 8 6 2.4223 2.1371 -1.0965 9 6 2.4289 1.6784 -2.4907 10 8 3.4703 1.3214 -3.0088 11 7 1.2812 1.6525 -3.1969 12 6 0.0512 2.1963 -2.6160 13 6 -0.0623 3.6825 -2.9614 14 6 1.2640 1.0806 -4.5456 15 1 0.2572 1.1602 -4.9559 16 6 2.2152 1.8462 -5.4190 17 6 1.5338 1.9345 -6.7808 18 6 1.8373 0.8206 -7.6784 19 7 1.4117 -0.4442 -6.9898 20 6 0.3268 -1.1493 -7.4381 21 1 -0.2396 -1.7624 -6.7526 22 6 -0.0450 -1.0761 -8.7735 23 7 0.8396 -0.7308 -9.6848 24 14 -1.8007 -1.4676 -9.2770 25 1 -2.5851 -0.2092 -9.3566 26 1 -1.7982 -2.1341 -10.6040 27 1 -2.4146 -2.3708 -8.2707 28 6 2.1602 -0.9020 -5.8551 29 6 1.6662 -0.4128 -4.4709 30 1 -0.3633 0.6088 0.8279 31 1 -0.3632 0.4126 -0.9413 32 1 -0.3633 -1.0214 0.1133 33 1 1.8935 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 2.8576 4.1943 1.3667 36 1 -0.8086 1.6624 -3.0208 37 1 0.0767 2.0759 -1.5331 38 1 -0.9778 4.0869 -2.5296 39 1 0.7975 4.2163 -2.5566 40 1 -0.0879 3.8028 -4.0444 41 1 2.3790 2.8448 -5.0137 42 1 3.1616 1.3124 -5.5047 43 1 0.4553 1.9710 -6.6266 44 1 1.8426 2.8619 -7.2631 45 1 1.2867 0.9370 -8.6119 46 1 2.9079 0.7896 -7.8806 47 1 0.5799 -0.6800 -10.6181 48 1 2.1451 -1.9918 -5.8554 49 1 3.1940 -0.5788 -5.9772 50 1 2.4638 -0.5359 -3.7383 51 1 0.8032 -1.0045 -4.1654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998190794.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:11 Heat of formation + Delta-G solvation = 48.480405 kcal Electronic energy + Delta-G solvation = -31303.889798 eV Core-core repulsion = 27433.090089 eV Total energy + Delta-G solvation = -3870.799709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.41525 -39.99765 -37.46073 -35.81363 -34.45252 -33.30594 -32.07426 -31.66755 -30.96955 -29.91229 -28.73517 -26.19581 -24.68690 -23.95309 -23.68792 -23.25801 -22.34908 -20.87891 -20.15991 -19.67886 -18.94167 -17.64988 -16.77308 -16.50971 -16.10360 -15.40166 -15.03766 -15.00124 -14.57320 -14.21254 -14.16965 -13.93848 -13.88656 -13.66718 -13.62458 -13.14943 -12.96527 -12.65160 -12.51565 -12.42399 -12.02859 -11.87638 -11.59194 -11.46372 -11.30949 -11.24291 -11.03421 -10.93410 -10.79255 -10.58129 -10.38021 -10.20768 -10.17254 -10.03419 -9.78683 -9.70185 -9.54006 -9.35956 -8.59848 -8.46802 -8.41037 -6.67366 -5.79323 -3.19696 1.55473 2.25142 2.76293 2.92908 3.30926 3.36811 3.45280 3.46204 4.22804 4.46837 4.51171 4.82058 4.84143 4.88408 5.07257 5.20103 5.22056 5.31579 5.34657 5.41442 5.45100 5.50637 5.57667 5.60281 5.63121 5.72376 5.84000 5.90290 5.99691 6.01446 6.03210 6.09875 6.12256 6.21273 6.25426 6.40906 6.50562 6.53150 6.67265 6.78845 6.87126 6.94897 7.03456 7.06778 7.10678 7.37422 7.48989 7.71026 7.75788 7.81930 8.18618 8.48149 9.17261 9.88133 10.43517 11.27758 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018821 B = 0.003402 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.339998 B = 8229.647697 C = 8531.324653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.046 4.046 3 C 0.056 3.944 4 N -0.489 5.489 5 C 0.197 3.803 6 N -0.545 5.545 7 H 0.423 0.577 8 C -0.060 4.060 9 C 0.588 3.412 10 O -0.516 6.516 11 N -0.593 5.593 12 C 0.096 3.904 13 C -0.166 4.166 14 C 0.163 3.837 15 H 0.092 0.908 16 C -0.112 4.112 17 C -0.131 4.131 18 C 0.144 3.856 19 N -0.585 5.585 20 C -0.250 4.250 21 H 0.066 0.934 22 C 0.003 3.997 23 N -0.894 5.894 24 Si 0.894 3.106 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.161 3.839 29 C -0.150 4.150 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.212 0.788 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.039 0.961 45 H 0.104 0.896 46 H 0.021 0.979 47 H 0.253 0.747 48 H 0.038 0.962 49 H 0.030 0.970 50 H 0.063 0.937 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.064 10.748 18.485 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.077 4.077 4 N -0.209 5.209 5 C -0.086 4.086 6 N -0.149 5.149 7 H 0.261 0.739 8 C -0.178 4.178 9 C 0.372 3.628 10 O -0.391 6.391 11 N -0.326 5.326 12 C -0.028 4.028 13 C -0.224 4.224 14 C 0.063 3.937 15 H 0.110 0.890 16 C -0.150 4.150 17 C -0.170 4.170 18 C 0.020 3.980 19 N -0.306 5.306 20 C -0.379 4.379 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.538 5.538 24 Si 0.725 3.275 25 H -0.216 1.216 26 H -0.219 1.219 27 H -0.204 1.204 28 C 0.032 3.968 29 C -0.192 4.192 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.228 0.772 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.122 0.878 46 H 0.039 0.961 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.048 0.952 50 H 0.082 0.918 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.275 10.278 18.783 21.412 hybrid contribution -0.613 0.730 -1.168 1.508 sum -0.338 11.007 17.614 20.773 Atomic orbital electron populations 1.21820 0.94407 1.02178 1.02238 1.19913 0.96181 0.89067 1.03243 1.20834 1.02555 0.97233 0.87052 1.69985 1.18838 1.01824 1.30226 1.24986 1.02824 0.98607 0.82217 1.43203 1.49709 1.12810 1.09191 0.73856 1.20906 1.12639 0.88392 0.95850 1.16920 0.84088 0.78863 0.82881 1.90863 1.31104 1.47418 1.69675 1.48461 1.08259 1.58849 1.17000 1.21766 0.87328 0.94270 0.99391 1.22170 1.01438 0.96061 1.02721 1.21408 1.00720 0.93424 0.78188 0.88965 1.21328 0.99688 0.98504 0.95494 1.21030 1.00164 0.99804 0.96029 1.20402 0.97565 0.83189 0.96820 1.44016 1.32887 1.24077 1.29643 1.19159 1.02947 1.24118 0.91702 0.91671 1.24903 0.97834 1.01255 0.95608 1.70050 1.31721 1.51806 1.00249 0.86386 0.85554 0.77846 0.77757 1.21609 1.21907 1.20379 1.20223 0.93574 0.96697 0.86343 1.23273 1.00688 0.93770 1.01479 0.92313 0.92289 0.91982 0.90609 0.90171 0.77172 0.89875 0.89908 0.91640 0.93447 0.91722 0.93346 0.90459 0.92683 0.94195 0.87785 0.96079 0.93715 0.94322 0.95194 0.91792 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.54 37.16 0.35 -1.12 16 2 C -0.05 -0.52 6.35 -27.88 -0.18 -0.70 16 3 C 0.06 0.70 5.71 -82.52 -0.47 0.23 16 4 N -0.49 -5.82 11.20 -10.65 -0.12 -5.94 16 5 C 0.20 1.69 13.01 -90.57 -1.18 0.51 16 6 N -0.55 -5.00 6.19 -10.79 -0.07 -5.06 16 7 H 0.42 2.81 8.96 -40.82 -0.37 2.44 16 8 C -0.06 -0.75 5.35 -82.14 -0.44 -1.19 16 9 C 0.59 8.72 6.18 -12.81 -0.08 8.65 16 10 O -0.52 -9.51 14.38 5.21 0.07 -9.43 16 11 N -0.59 -8.19 2.29 -168.13 -0.39 -8.57 16 12 C 0.10 1.05 5.12 -4.04 -0.02 1.03 16 13 C -0.17 -1.60 10.24 37.16 0.38 -1.22 16 14 C 0.16 2.72 2.30 -68.39 -0.16 2.56 16 15 H 0.09 1.62 6.46 -51.93 -0.34 1.29 16 16 C -0.11 -1.97 4.09 -28.40 -0.12 -2.08 16 17 C -0.13 -2.50 5.20 -30.19 -0.16 -2.66 16 18 C 0.14 3.34 5.41 -5.20 -0.03 3.31 16 19 N -0.59 -14.22 2.58 -175.08 -0.45 -14.67 16 20 C -0.25 -6.65 9.56 -15.06 -0.14 -6.80 16 21 H 0.07 1.73 7.93 -52.49 -0.42 1.31 16 22 C 0.00 0.07 4.89 -17.43 -0.09 -0.02 16 23 N -0.89 -25.42 11.18 55.49 0.62 -24.80 16 24 Si 0.89 21.20 29.61 -169.99 -5.03 16.17 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 C 0.16 3.48 5.18 -4.66 -0.02 3.45 16 29 C -0.15 -2.75 5.80 -24.76 -0.14 -2.89 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.60 5.61 -51.93 -0.29 0.30 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.95 7.78 -51.93 -0.40 0.55 16 34 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.08 0.89 7.91 -51.93 -0.41 0.48 16 37 H 0.08 0.87 4.34 -51.93 -0.23 0.65 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.80 7.86 -51.93 -0.41 0.39 16 42 H 0.08 1.53 5.94 -51.93 -0.31 1.22 16 43 H 0.05 1.07 6.93 -51.92 -0.36 0.71 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.10 2.71 5.46 -51.93 -0.28 2.43 16 46 H 0.02 0.50 8.12 -51.93 -0.42 0.07 16 47 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.04 0.86 8.00 -51.93 -0.42 0.45 16 49 H 0.03 0.65 6.88 -51.93 -0.36 0.30 16 50 H 0.06 1.18 6.20 -51.93 -0.32 0.86 16 51 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 388.55 15.07 5.86 5.86 Total: -1.00 -31.92 388.55 -10.26 -42.18 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.27 Total: 3.21 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.49 Total: 1.07 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.40 Total: -59.05 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.07 Total: -9.43 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.92 -10.26 -42.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998190794.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.657 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds