Wall clock time and date at job start Tue Mar 31 2020 18:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47239 * 2 1 4 4 N 1.33320 * 126.10331 * 83.60736 * 3 2 1 5 5 C 1.30861 * 109.68225 * 179.73850 * 4 3 2 6 6 N 1.34497 * 109.16074 * 359.97438 * 5 4 3 7 7 H 0.97005 * 126.46908 * 179.97438 * 6 5 4 8 8 C 1.36655 * 126.10573 * 263.29943 * 3 2 1 9 9 C 1.46770 * 126.84572 * 0.22787 * 8 3 2 10 10 O 1.21679 * 119.99970 * 258.99354 * 9 8 3 11 11 N 1.34777 * 119.99686 * 78.99206 * 9 8 3 12 12 C 1.46497 * 120.00206 * 5.61196 * 11 9 8 13 13 C 1.53003 * 109.47217 * 89.73011 * 12 11 9 14 14 C 1.46500 * 119.99463 * 185.60716 * 11 9 8 15 15 H 1.09003 * 109.20203 * 180.64253 * 14 11 9 16 16 C 1.50129 * 109.21043 * 300.00269 * 14 11 9 17 17 C 1.52531 * 105.41528 * 218.02718 * 16 14 11 18 18 C 1.46237 * 114.27872 * 270.59508 * 17 16 14 19 19 N 1.50168 * 107.53301 * 58.40650 * 18 17 16 20 20 C 1.36942 * 120.53879 * 109.61088 * 19 18 17 21 21 H 1.07998 * 119.99768 * 207.15481 * 20 19 18 22 22 C 1.38812 * 119.99728 * 27.15318 * 20 19 18 23 23 N 1.31614 * 119.99975 * 22.91085 * 22 20 19 24 24 Si 1.86800 * 119.99902 * 202.91789 * 22 20 19 25 25 H 1.48499 * 109.47263 * 94.98941 * 24 22 20 26 26 H 1.48498 * 109.47153 * 214.99312 * 24 22 20 27 27 H 1.48505 * 109.47009 * 334.98859 * 24 22 20 28 28 C 1.43436 * 118.92818 * 289.59126 * 19 18 17 29 29 C 1.54845 * 109.20788 * 61.32631 * 14 11 9 30 30 H 1.08996 * 109.46905 * 306.33002 * 1 2 3 31 31 H 1.09001 * 109.46323 * 66.33129 * 1 2 3 32 32 H 1.09000 * 109.46934 * 186.33214 * 1 2 3 33 33 H 1.08994 * 109.47740 * 239.99766 * 2 1 3 34 34 H 1.09007 * 109.46930 * 119.99446 * 2 1 3 35 35 H 1.07997 * 125.41611 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.46591 * 209.73151 * 12 11 9 37 37 H 1.08995 * 109.47074 * 329.72663 * 12 11 9 38 38 H 1.08999 * 109.46681 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.46943 * 299.99600 * 13 12 11 40 40 H 1.08995 * 109.46758 * 60.00266 * 13 12 11 41 41 H 1.09004 * 110.24765 * 336.99688 * 16 14 11 42 42 H 1.08992 * 110.25092 * 99.05697 * 16 14 11 43 43 H 1.09010 * 108.52216 * 31.83922 * 17 16 14 44 44 H 1.09003 * 108.52400 * 149.35136 * 17 16 14 45 45 H 1.09002 * 109.84685 * 177.91460 * 18 17 16 46 46 H 1.08997 * 109.84366 * 298.89880 * 18 17 16 47 47 H 0.97003 * 119.99808 * 179.97438 * 23 22 20 48 48 H 1.08991 * 108.16148 * 213.28680 * 28 19 18 49 49 H 1.09002 * 108.15548 * 330.06296 * 28 19 18 50 50 H 1.08994 * 109.35885 * 320.99234 * 29 14 11 51 51 H 1.09004 * 109.35782 * 80.58341 * 29 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1812 2.2014 1.0705 5 6 2.6437 3.3693 0.7035 6 7 2.8103 3.3786 -0.6311 7 1 3.1397 4.1178 -1.1659 8 6 2.4223 2.1371 -1.0965 9 6 2.4289 1.6784 -2.4907 10 8 3.4703 1.3214 -3.0088 11 7 1.2812 1.6525 -3.1969 12 6 0.0512 2.1963 -2.6160 13 6 -0.0623 3.6825 -2.9614 14 6 1.2640 1.0806 -4.5456 15 1 0.2572 1.1602 -4.9559 16 6 2.2152 1.8462 -5.4190 17 6 1.5338 1.9345 -6.7808 18 6 1.8373 0.8206 -7.6784 19 7 1.4117 -0.4442 -6.9898 20 6 0.3268 -1.1493 -7.4381 21 1 -0.2396 -1.7624 -6.7526 22 6 -0.0450 -1.0761 -8.7735 23 7 0.8396 -0.7308 -9.6848 24 14 -1.8007 -1.4676 -9.2770 25 1 -2.5851 -0.2092 -9.3566 26 1 -1.7982 -2.1341 -10.6040 27 1 -2.4146 -2.3708 -8.2707 28 6 2.1602 -0.9020 -5.8551 29 6 1.6662 -0.4128 -4.4709 30 1 -0.3633 0.6088 0.8279 31 1 -0.3632 0.4126 -0.9413 32 1 -0.3633 -1.0214 0.1133 33 1 1.8935 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 2.8576 4.1943 1.3667 36 1 -0.8086 1.6624 -3.0208 37 1 0.0767 2.0759 -1.5331 38 1 -0.9778 4.0869 -2.5296 39 1 0.7975 4.2163 -2.5566 40 1 -0.0879 3.8028 -4.0444 41 1 2.3790 2.8448 -5.0137 42 1 3.1616 1.3124 -5.5047 43 1 0.4553 1.9710 -6.6266 44 1 1.8426 2.8619 -7.2631 45 1 1.2867 0.9370 -8.6119 46 1 2.9079 0.7896 -7.8806 47 1 0.5799 -0.6800 -10.6181 48 1 2.1451 -1.9918 -5.8554 49 1 3.1940 -0.5788 -5.9772 50 1 2.4638 -0.5359 -3.7383 51 1 0.8032 -1.0045 -4.1654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998190794.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:08 Heat of formation + Delta-G solvation = 30.878938 kcal Electronic energy + Delta-G solvation = -31304.653055 eV Core-core repulsion = 27433.090089 eV Total energy + Delta-G solvation = -3871.562966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.24442 -41.23779 -39.03844 -37.05692 -35.34347 -34.91761 -33.37337 -33.03984 -32.47084 -30.97855 -29.80168 -27.96398 -26.04980 -25.48546 -24.61728 -24.51838 -23.27076 -21.88314 -21.74727 -21.09946 -20.01724 -18.69483 -18.47868 -17.56613 -17.44875 -16.93955 -16.34213 -16.06098 -15.84342 -15.66645 -15.48643 -14.99357 -14.94997 -14.83677 -14.74475 -14.45332 -14.34931 -14.03453 -13.93778 -13.35276 -13.29908 -13.24567 -13.14461 -12.82655 -12.70378 -12.61429 -12.39562 -12.23751 -12.13009 -11.94920 -11.91124 -11.64047 -11.51345 -11.46027 -11.32913 -11.18458 -10.96635 -10.73619 -10.42459 -9.71829 -9.41407 -8.67004 -7.84966 -5.28431 0.71167 1.24948 1.48885 1.51134 1.59828 1.80549 2.04604 2.41699 2.54392 3.24554 3.42326 3.56508 3.62724 3.88188 3.96374 4.02035 4.04317 4.22960 4.29148 4.31766 4.40190 4.42341 4.48040 4.51724 4.55197 4.58960 4.69447 4.70358 4.84508 4.85949 4.90134 4.95569 4.97321 5.02634 5.09408 5.17623 5.19153 5.23835 5.27564 5.32121 5.32539 5.43014 5.54880 5.62925 5.66057 5.70502 5.79138 6.34541 6.40781 6.44621 6.95963 7.05629 7.13421 7.88289 8.42207 9.20550 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018821 B = 0.003402 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.339998 B = 8229.647697 C = 8531.324653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C 0.052 3.948 4 N -0.521 5.521 5 C 0.223 3.777 6 N -0.537 5.537 7 H 0.435 0.565 8 C -0.083 4.083 9 C 0.592 3.408 10 O -0.560 6.560 11 N -0.587 5.587 12 C 0.093 3.907 13 C -0.160 4.160 14 C 0.172 3.828 15 H 0.089 0.911 16 C -0.097 4.097 17 C -0.121 4.121 18 C 0.151 3.849 19 N -0.597 5.597 20 C -0.256 4.256 21 H 0.065 0.935 22 C -0.046 4.046 23 N -0.927 5.927 24 Si 0.959 3.041 25 H -0.284 1.284 26 H -0.299 1.299 27 H -0.269 1.269 28 C 0.163 3.837 29 C -0.134 4.134 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.259 0.741 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.006 0.994 47 H 0.250 0.750 48 H 0.024 0.976 49 H 0.021 0.979 50 H 0.061 0.939 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.454 12.659 20.815 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 C -0.081 4.081 4 N -0.241 5.241 5 C -0.060 4.060 6 N -0.142 5.142 7 H 0.276 0.724 8 C -0.201 4.201 9 C 0.379 3.621 10 O -0.438 6.438 11 N -0.319 5.319 12 C -0.029 4.029 13 C -0.218 4.218 14 C 0.070 3.930 15 H 0.107 0.893 16 C -0.135 4.135 17 C -0.160 4.160 18 C 0.027 3.973 19 N -0.319 5.319 20 C -0.386 4.386 21 H 0.082 0.918 22 C -0.241 4.241 23 N -0.573 5.573 24 Si 0.788 3.212 25 H -0.211 1.211 26 H -0.226 1.226 27 H -0.194 1.194 28 C 0.034 3.966 29 C -0.176 4.176 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.275 0.725 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.024 0.976 47 H 0.059 0.941 48 H 0.042 0.958 49 H 0.039 0.961 50 H 0.080 0.920 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.134 12.214 21.145 24.445 hybrid contribution -0.091 0.128 -1.815 1.822 sum -1.224 12.342 19.330 22.967 Atomic orbital electron populations 1.21759 0.93132 1.02830 1.02178 1.19926 0.97295 0.88972 1.02472 1.20953 1.02308 0.97477 0.87345 1.70012 1.20732 1.03143 1.30238 1.25928 0.99408 0.98545 0.82165 1.43185 1.49266 1.12119 1.09598 0.72380 1.20480 1.15095 0.90147 0.94363 1.17188 0.83430 0.77887 0.83645 1.90843 1.32647 1.49365 1.70901 1.48374 1.09285 1.58359 1.15843 1.21964 0.85938 0.95255 0.99724 1.22124 1.02754 0.94852 1.02104 1.21077 0.99946 0.92158 0.79796 0.89327 1.21148 0.98445 0.99117 0.94822 1.20830 1.00226 0.98778 0.96187 1.20272 0.96050 0.84334 0.96657 1.44187 1.32819 1.24600 1.30306 1.19403 1.03382 1.24020 0.91829 0.91750 1.25606 1.01126 1.01828 0.95564 1.70188 1.33380 1.53423 1.00279 0.85372 0.81174 0.77711 0.76961 1.21100 1.22605 1.19382 1.20258 0.93106 0.95905 0.87338 1.23005 1.00536 0.95281 0.98771 0.91972 0.92521 0.91095 0.92342 0.89935 0.72540 0.89410 0.89077 0.89514 0.92999 0.92848 0.91790 0.92816 0.92708 0.92320 0.90496 0.97593 0.94092 0.95758 0.96102 0.92034 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.54 71.98 0.69 -1.91 16 2 C -0.05 -1.07 6.35 29.85 0.19 -0.88 16 3 C 0.05 1.21 5.71 41.96 0.24 1.45 16 4 N -0.52 -11.06 11.20 -187.59 -2.10 -13.17 16 5 C 0.22 3.01 13.01 180.33 2.35 5.35 16 6 N -0.54 -8.31 6.19 -188.04 -1.16 -9.48 16 7 H 0.44 4.47 8.96 -92.70 -0.83 3.64 16 8 C -0.08 -1.94 5.35 40.01 0.21 -1.72 16 9 C 0.59 17.12 6.18 86.47 0.53 17.66 16 10 O -0.56 -20.74 14.38 -4.28 -0.06 -20.80 16 11 N -0.59 -15.56 2.29 -804.06 -1.84 -17.40 16 12 C 0.09 1.85 5.12 86.38 0.44 2.29 16 13 C -0.16 -2.64 10.24 71.98 0.74 -1.90 16 14 C 0.17 5.65 2.30 44.70 0.10 5.75 16 15 H 0.09 3.03 6.46 -2.39 -0.02 3.01 16 16 C -0.10 -3.38 4.09 29.51 0.12 -3.26 16 17 C -0.12 -4.60 5.20 28.36 0.15 -4.45 16 18 C 0.15 7.16 5.41 83.58 0.45 7.62 16 19 N -0.60 -29.71 2.58 -707.84 -1.83 -31.54 16 20 C -0.26 -13.82 9.56 84.03 0.80 -13.02 16 21 H 0.06 3.42 7.93 -2.91 -0.02 3.40 16 22 C -0.05 -2.49 4.89 84.86 0.42 -2.08 16 23 N -0.93 -53.92 11.18 21.65 0.24 -53.68 16 24 Si 0.96 43.86 29.61 68.60 2.03 45.89 16 25 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 26 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 C 0.16 7.23 5.18 87.59 0.45 7.68 16 29 C -0.13 -4.97 5.80 31.87 0.18 -4.78 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.05 5.61 -2.39 -0.01 1.04 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.48 7.78 -2.39 -0.02 1.46 16 34 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.26 0.70 8.06 -2.91 -0.02 0.68 16 36 H 0.09 1.68 7.91 -2.39 -0.02 1.66 16 37 H 0.09 1.71 4.34 -2.39 -0.01 1.70 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 2.03 7.86 -2.38 -0.02 2.01 16 42 H 0.05 2.16 5.94 -2.39 -0.01 2.14 16 43 H 0.05 2.10 6.93 -2.38 -0.02 2.08 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.08 4.13 5.46 -2.39 -0.01 4.12 16 46 H 0.01 0.29 8.12 -2.39 -0.02 0.27 16 47 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 48 H 0.02 1.12 8.00 -2.39 -0.02 1.10 16 49 H 0.02 0.95 6.88 -2.39 -0.02 0.93 16 50 H 0.06 2.32 6.20 -2.39 -0.01 2.31 16 51 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -70.54 388.55 3.45 -67.09 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.11 Total: 19.28 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 8.07 Total: 13.80 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -6.69 Total: -125.26 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.06 Total: -20.80 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.54 3.45 -67.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998190794.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.969 kcal (2) G-P(sol) polarization free energy of solvation -70.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds