Wall clock time and date at job start Tue Mar 31 2020 18:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.30506 * 125.64745 * 269.69161 * 3 2 1 5 5 C 1.34131 * 109.25398 * 179.89416 * 4 3 2 6 6 C 1.34665 * 108.01904 * 0.36667 * 5 4 3 7 7 N 1.35041 * 125.65404 * 89.99567 * 3 2 1 8 8 C 1.46499 * 126.39651 * 359.94171 * 7 3 2 9 9 H 1.08998 * 109.47013 * 359.97438 * 8 7 3 10 10 C 1.52998 * 109.47566 * 239.99690 * 8 7 3 11 11 C 1.53004 * 109.46926 * 119.99885 * 8 7 3 12 12 C 1.50704 * 109.46868 * 185.00280 * 11 8 7 13 13 O 1.21275 * 120.00228 * 359.97438 * 12 11 8 14 14 N 1.34781 * 119.99523 * 180.02562 * 12 11 8 15 15 C 1.46923 * 120.63153 * 0.02562 * 14 12 11 16 16 C 1.53196 * 108.77727 * 126.36808 * 15 14 12 17 17 C 1.53046 * 109.30953 * 54.63151 * 16 15 14 18 18 C 1.53037 * 109.53916 * 298.63393 * 17 16 15 19 19 H 1.08998 * 109.49964 * 301.38236 * 18 17 16 20 20 N 1.46501 * 109.49897 * 181.31639 * 18 17 16 21 21 C 1.36940 * 119.99580 * 85.00039 * 20 18 17 22 22 H 1.07996 * 120.00114 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99888 * 180.02562 * 21 20 18 24 24 N 1.31611 * 120.00322 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99674 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47016 * 90.00082 * 25 23 21 27 27 H 1.48496 * 109.46893 * 209.99681 * 25 23 21 28 28 H 1.48499 * 109.47306 * 329.99933 * 25 23 21 29 29 C 1.46922 * 120.62844 * 179.71533 * 14 12 11 30 30 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 33 33 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 34 34 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 35 35 H 1.08002 * 125.98500 * 180.18482 * 5 4 3 36 36 H 1.08007 * 126.58645 * 179.74620 * 6 5 4 37 37 H 1.09005 * 109.46474 * 59.99939 * 10 8 7 38 38 H 1.08994 * 109.47429 * 179.97438 * 10 8 7 39 39 H 1.09000 * 109.47474 * 300.00918 * 10 8 7 40 40 H 1.09001 * 109.47308 * 305.00432 * 11 8 7 41 41 H 1.09000 * 109.47065 * 65.00573 * 11 8 7 42 42 H 1.09007 * 109.58441 * 246.15513 * 15 14 12 43 43 H 1.08996 * 109.59151 * 6.57908 * 15 14 12 44 44 H 1.09000 * 109.49895 * 174.58348 * 16 15 14 45 45 H 1.08997 * 109.49857 * 294.65083 * 16 15 14 46 46 H 1.09001 * 109.45647 * 58.65838 * 17 16 15 47 47 H 1.09007 * 109.45806 * 178.62891 * 17 16 15 48 48 H 0.96992 * 120.00197 * 265.00392 * 20 18 17 49 49 H 0.97000 * 120.00326 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.58768 * 353.42209 * 29 14 12 51 51 H 1.09001 * 109.58536 * 113.84198 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2913 2.1360 -1.0605 5 6 2.7161 3.3506 -0.6820 6 6 2.7284 3.3868 0.6641 7 7 2.2947 2.1629 1.0973 8 6 2.1430 1.7377 2.4910 9 1 1.7785 0.7109 2.5199 10 6 1.1419 2.6538 3.1977 11 6 3.4968 1.8190 3.1992 12 6 3.3673 1.2665 4.5953 13 8 2.2975 0.8492 4.9855 14 7 4.4402 1.2370 5.4105 15 6 5.7423 1.7404 4.9526 16 6 6.2516 2.7773 5.9588 17 6 6.2741 2.1567 7.3576 18 6 4.8547 1.7499 7.7599 19 1 4.2059 2.6255 7.7402 20 7 4.8726 1.1848 9.1114 21 6 4.8028 2.0121 10.2004 22 1 4.7350 3.0811 10.0629 23 6 4.8202 1.4767 11.4810 24 7 4.7536 2.2718 12.5277 25 14 4.9396 -0.3723 11.7187 26 1 6.3680 -0.7695 11.8015 27 1 4.2457 -0.7557 12.9744 28 1 4.2999 -1.0615 10.5694 29 6 4.3282 0.7071 6.7763 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5137 0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 3.0014 4.1571 -1.3413 36 1 3.0241 4.2211 1.2830 37 1 0.1775 2.5959 2.6930 38 1 1.0287 2.3372 4.2344 39 1 1.5059 3.6808 3.1687 40 1 4.2326 1.2366 2.6447 41 1 3.8191 2.8591 3.2486 42 1 6.4512 0.9148 4.8883 43 1 5.6305 2.2057 3.9734 44 1 7.2592 3.0881 5.6824 45 1 5.5899 3.6434 5.9551 46 1 6.9170 1.2765 7.3539 47 1 6.6592 2.8847 8.0717 48 1 4.9338 0.2247 9.2348 49 1 4.7662 1.8977 13.4226 50 1 3.2835 0.4908 6.9998 51 1 4.9191 -0.2047 6.8640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999199414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:37 Heat of formation + Delta-G solvation = 31.378642 kcal Electronic energy + Delta-G solvation = -29486.763364 eV Core-core repulsion = 25615.222067 eV Total energy + Delta-G solvation = -3871.541297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.44374 -40.39037 -37.85965 -35.83878 -34.78919 -34.09369 -32.39357 -31.60880 -31.07775 -29.37835 -28.86140 -28.02499 -25.28539 -24.21810 -23.85933 -23.06764 -22.09113 -21.30847 -20.25133 -19.55844 -18.96469 -17.87285 -17.73713 -16.68163 -16.08805 -15.83302 -15.37787 -15.20270 -14.84792 -14.55017 -14.34175 -14.25797 -14.03781 -13.77944 -13.72619 -13.59461 -13.44828 -13.09377 -12.99931 -12.84251 -12.57786 -12.52556 -12.10914 -11.94061 -11.86286 -11.61940 -11.43826 -11.33247 -11.21155 -11.08038 -10.78233 -10.62055 -10.51595 -10.22593 -10.16537 -9.90890 -9.79137 -9.66815 -9.01747 -8.64921 -8.57697 -7.37936 -5.84342 -3.21627 1.81157 2.34217 2.44567 2.93033 2.96297 3.32407 3.34928 3.40918 4.07764 4.11786 4.24955 4.35234 4.52241 4.53643 4.66625 4.75030 4.83877 4.93938 4.94825 5.01865 5.09058 5.10826 5.12756 5.25592 5.29690 5.34381 5.35901 5.41659 5.46137 5.51187 5.55942 5.57461 5.60357 5.69992 5.78600 5.86234 5.90341 5.93932 5.99629 6.14011 6.19372 6.32817 6.43185 6.55972 6.68230 6.83878 6.96245 7.29253 7.89171 7.90751 8.00450 8.33691 9.10918 9.83282 10.01567 11.33570 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021367 B = 0.002405 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.134537 B =11637.607085 C =12182.096565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.209 3.791 4 N -0.493 5.493 5 C -0.031 4.031 6 C -0.056 4.056 7 N -0.448 5.448 8 C 0.146 3.854 9 H 0.111 0.889 10 C -0.166 4.166 11 C -0.150 4.150 12 C 0.519 3.481 13 O -0.538 6.538 14 N -0.601 5.601 15 C 0.105 3.895 16 C -0.133 4.133 17 C -0.138 4.138 18 C 0.173 3.827 19 H 0.058 0.942 20 N -0.745 5.745 21 C -0.246 4.246 22 H 0.090 0.910 23 C 0.007 3.993 24 N -0.931 5.931 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.276 1.276 29 C 0.103 3.897 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.361 0.639 49 H 0.260 0.740 50 H 0.095 0.905 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 -1.178 -25.891 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.053 4.053 4 N -0.212 5.212 5 C -0.179 4.179 6 C -0.188 4.188 7 N -0.130 5.130 8 C 0.043 3.957 9 H 0.129 0.871 10 C -0.223 4.223 11 C -0.190 4.190 12 C 0.306 3.694 13 O -0.416 6.416 14 N -0.334 5.334 15 C -0.018 4.018 16 C -0.172 4.172 17 C -0.179 4.179 18 C 0.063 3.937 19 H 0.076 0.924 20 N -0.387 5.387 21 C -0.375 4.375 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.578 5.578 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.202 1.202 29 C -0.020 4.020 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.185 0.815 36 H 0.188 0.812 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.194 0.806 49 H 0.071 0.929 50 H 0.113 0.887 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.494 -1.504 -26.154 26.316 hybrid contribution 0.547 -0.719 1.230 1.526 sum -1.946 -2.223 -24.925 25.099 Atomic orbital electron populations 1.21745 0.93852 1.02374 1.02555 1.19984 0.96578 0.87477 1.03952 1.23270 1.04052 0.96642 0.81372 1.70241 1.18356 1.04315 1.28266 1.22256 1.06691 0.96184 0.92766 1.22623 1.09409 0.90081 0.96730 1.45623 1.48595 1.11745 1.07086 1.21187 0.95475 1.01600 0.77414 0.87111 1.22285 0.98095 0.98787 1.03170 1.22018 0.98526 1.04151 0.94353 1.20146 0.83794 0.78891 0.86551 1.90698 1.26638 1.47990 1.76244 1.48066 1.09497 1.61604 1.14227 1.21839 0.84397 0.97666 0.97875 1.21931 1.01136 0.98019 0.96135 1.22260 1.00139 1.00923 0.94571 1.20343 0.94060 0.94936 0.84394 0.92382 1.42664 1.89928 1.05241 1.00889 1.19011 1.43334 0.91480 0.83714 0.89181 1.24673 1.01735 0.97191 0.95316 1.69691 1.56953 1.33588 0.97617 0.86557 0.77801 0.86919 0.77290 1.21051 1.21648 1.20249 1.21944 1.03599 0.96852 0.79589 0.91900 0.91540 0.92698 0.90421 0.88746 0.81513 0.81170 0.91943 0.88172 0.92170 0.88262 0.87974 0.91128 0.90256 0.91026 0.91630 0.92506 0.90938 0.80567 0.92948 0.88668 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.90 37.16 0.37 -0.69 16 2 C -0.04 -0.32 6.08 -27.88 -0.17 -0.49 16 3 C 0.21 2.17 7.16 -155.41 -1.11 1.06 16 4 N -0.49 -5.96 11.25 -10.82 -0.12 -6.08 16 5 C -0.03 -0.31 11.87 -17.81 -0.21 -0.53 16 6 C -0.06 -0.49 10.70 -16.56 -0.18 -0.67 16 7 N -0.45 -4.16 2.61 -106.83 -0.28 -4.43 16 8 C 0.15 1.29 2.64 -67.93 -0.18 1.11 16 9 H 0.11 1.02 6.48 -51.93 -0.34 0.69 16 10 C -0.17 -1.55 8.99 37.16 0.33 -1.21 16 11 C -0.15 -1.24 3.53 -27.88 -0.10 -1.34 16 12 C 0.52 6.20 7.42 -10.98 -0.08 6.12 16 13 O -0.54 -8.15 13.38 5.56 0.07 -8.07 16 14 N -0.60 -7.31 2.98 -173.06 -0.52 -7.83 16 15 C 0.11 0.98 6.34 -3.71 -0.02 0.95 16 16 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16 17 C -0.14 -2.10 5.47 -26.69 -0.15 -2.25 16 18 C 0.17 3.09 2.91 -68.06 -0.20 2.90 16 19 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 20 N -0.74 -16.76 4.93 -53.55 -0.26 -17.03 16 21 C -0.25 -6.69 10.41 -15.06 -0.16 -6.84 16 22 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 23 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 24 N -0.93 -28.68 13.97 55.49 0.78 -27.91 16 25 Si 0.88 21.57 27.74 -169.99 -4.71 16.86 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 29 C 0.10 1.58 5.87 -3.96 -0.02 1.55 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.53 7.08 -51.93 -0.37 0.17 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 1.15 5.95 -51.93 -0.31 0.84 16 39 H 0.06 0.51 7.95 -51.93 -0.41 0.10 16 40 H 0.10 0.72 7.94 -51.93 -0.41 0.31 16 41 H 0.10 0.72 7.64 -51.93 -0.40 0.32 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.54 5.93 -51.93 -0.31 0.23 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 48 H 0.36 8.01 5.66 -40.82 -0.23 7.77 16 49 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 50 H 0.09 1.65 7.01 -51.93 -0.36 1.29 16 51 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 400.21 15.07 6.03 6.03 Total: -1.00 -33.33 400.21 -9.79 -43.12 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -8.65 Total: 7.18 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.13 Total: -1.84 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -0.40 Total: -63.28 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.07 Total: -8.07 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.33 -9.79 -43.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999199414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.500 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds