Wall clock time and date at job start Tue Mar 31 2020 18:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.30506 * 125.64745 * 269.69161 * 3 2 1 5 5 C 1.34131 * 109.25398 * 179.89416 * 4 3 2 6 6 C 1.34665 * 108.01904 * 0.36667 * 5 4 3 7 7 N 1.35041 * 125.65404 * 89.99567 * 3 2 1 8 8 C 1.46499 * 126.39651 * 359.94171 * 7 3 2 9 9 H 1.08998 * 109.47013 * 359.97438 * 8 7 3 10 10 C 1.52998 * 109.47566 * 239.99690 * 8 7 3 11 11 C 1.53004 * 109.46926 * 119.99885 * 8 7 3 12 12 C 1.50704 * 109.46868 * 185.00280 * 11 8 7 13 13 O 1.21275 * 120.00228 * 359.97438 * 12 11 8 14 14 N 1.34781 * 119.99523 * 180.02562 * 12 11 8 15 15 C 1.46923 * 120.63153 * 0.02562 * 14 12 11 16 16 C 1.53196 * 108.77727 * 126.36808 * 15 14 12 17 17 C 1.53046 * 109.30953 * 54.63151 * 16 15 14 18 18 C 1.53037 * 109.53916 * 298.63393 * 17 16 15 19 19 H 1.08998 * 109.49964 * 301.38236 * 18 17 16 20 20 N 1.46501 * 109.49897 * 181.31639 * 18 17 16 21 21 C 1.36940 * 119.99580 * 85.00039 * 20 18 17 22 22 H 1.07996 * 120.00114 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99888 * 180.02562 * 21 20 18 24 24 N 1.31611 * 120.00322 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99674 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47016 * 90.00082 * 25 23 21 27 27 H 1.48496 * 109.46893 * 209.99681 * 25 23 21 28 28 H 1.48499 * 109.47306 * 329.99933 * 25 23 21 29 29 C 1.46922 * 120.62844 * 179.71533 * 14 12 11 30 30 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 33 33 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 34 34 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 35 35 H 1.08002 * 125.98500 * 180.18482 * 5 4 3 36 36 H 1.08007 * 126.58645 * 179.74620 * 6 5 4 37 37 H 1.09005 * 109.46474 * 59.99939 * 10 8 7 38 38 H 1.08994 * 109.47429 * 179.97438 * 10 8 7 39 39 H 1.09000 * 109.47474 * 300.00918 * 10 8 7 40 40 H 1.09001 * 109.47308 * 305.00432 * 11 8 7 41 41 H 1.09000 * 109.47065 * 65.00573 * 11 8 7 42 42 H 1.09007 * 109.58441 * 246.15513 * 15 14 12 43 43 H 1.08996 * 109.59151 * 6.57908 * 15 14 12 44 44 H 1.09000 * 109.49895 * 174.58348 * 16 15 14 45 45 H 1.08997 * 109.49857 * 294.65083 * 16 15 14 46 46 H 1.09001 * 109.45647 * 58.65838 * 17 16 15 47 47 H 1.09007 * 109.45806 * 178.62891 * 17 16 15 48 48 H 0.96992 * 120.00197 * 265.00392 * 20 18 17 49 49 H 0.97000 * 120.00326 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.58768 * 353.42209 * 29 14 12 51 51 H 1.09001 * 109.58536 * 113.84198 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2913 2.1360 -1.0605 5 6 2.7161 3.3506 -0.6820 6 6 2.7284 3.3868 0.6641 7 7 2.2947 2.1629 1.0973 8 6 2.1430 1.7377 2.4910 9 1 1.7785 0.7109 2.5199 10 6 1.1419 2.6538 3.1977 11 6 3.4968 1.8190 3.1992 12 6 3.3673 1.2665 4.5953 13 8 2.2975 0.8492 4.9855 14 7 4.4402 1.2370 5.4105 15 6 5.7423 1.7404 4.9526 16 6 6.2516 2.7773 5.9588 17 6 6.2741 2.1567 7.3576 18 6 4.8547 1.7499 7.7599 19 1 4.2059 2.6255 7.7402 20 7 4.8726 1.1848 9.1114 21 6 4.8028 2.0121 10.2004 22 1 4.7350 3.0811 10.0629 23 6 4.8202 1.4767 11.4810 24 7 4.7536 2.2718 12.5277 25 14 4.9396 -0.3723 11.7187 26 1 6.3680 -0.7695 11.8015 27 1 4.2457 -0.7557 12.9744 28 1 4.2999 -1.0615 10.5694 29 6 4.3282 0.7071 6.7763 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5137 0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 3.0014 4.1571 -1.3413 36 1 3.0241 4.2211 1.2830 37 1 0.1775 2.5959 2.6930 38 1 1.0287 2.3372 4.2344 39 1 1.5059 3.6808 3.1687 40 1 4.2326 1.2366 2.6447 41 1 3.8191 2.8591 3.2486 42 1 6.4512 0.9148 4.8883 43 1 5.6305 2.2057 3.9734 44 1 7.2592 3.0881 5.6824 45 1 5.5899 3.6434 5.9551 46 1 6.9170 1.2765 7.3539 47 1 6.6592 2.8847 8.0717 48 1 4.9338 0.2247 9.2348 49 1 4.7662 1.8977 13.4226 50 1 3.2835 0.4908 6.9998 51 1 4.9191 -0.2047 6.8640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999199414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:35 Heat of formation + Delta-G solvation = 11.112706 kcal Electronic energy + Delta-G solvation = -29487.642161 eV Core-core repulsion = 25615.222067 eV Total energy + Delta-G solvation = -3872.420094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.14847 -41.37003 -39.01111 -36.65392 -36.33648 -34.69582 -33.98667 -32.95405 -31.99454 -30.71534 -29.52459 -28.98319 -26.32748 -25.54043 -24.78140 -23.92859 -23.35995 -22.12659 -21.49492 -20.38800 -20.01562 -19.50195 -18.65652 -17.55030 -17.03680 -16.72751 -16.62155 -16.23486 -15.95478 -15.71217 -15.31540 -15.23014 -15.10903 -14.89534 -14.71963 -14.50648 -14.38037 -14.20065 -14.03629 -13.92687 -13.86600 -13.20685 -13.11728 -12.98042 -12.89142 -12.58894 -12.52996 -12.45625 -12.25053 -12.12186 -12.00616 -11.95340 -11.82002 -11.76751 -11.69748 -11.03669 -10.96313 -10.78602 -10.57484 -9.72481 -9.33447 -9.26267 -8.04800 -5.39492 1.12216 1.36712 1.40155 1.46885 1.49860 1.61377 2.07353 2.21829 2.46412 3.26381 3.36804 3.42946 3.53680 3.54910 3.68121 3.88214 3.96643 3.99828 4.07812 4.11753 4.18729 4.24528 4.33758 4.35998 4.39554 4.44568 4.50916 4.57709 4.67945 4.69271 4.72828 4.77493 4.81057 4.85723 4.86658 4.98700 5.02905 5.08801 5.14497 5.16805 5.28110 5.38611 5.42529 5.45214 5.52075 5.74402 5.89486 6.18292 6.26917 6.37282 7.03415 7.08302 7.20004 7.78552 7.97749 9.16498 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021367 B = 0.002405 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.134537 B =11637.607085 C =12182.096565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C 0.197 3.803 4 N -0.528 5.528 5 C -0.053 4.053 6 C -0.049 4.049 7 N -0.445 5.445 8 C 0.152 3.848 9 H 0.106 0.894 10 C -0.161 4.161 11 C -0.137 4.137 12 C 0.517 3.483 13 O -0.575 6.575 14 N -0.602 5.602 15 C 0.104 3.896 16 C -0.125 4.125 17 C -0.132 4.132 18 C 0.169 3.831 19 H 0.031 0.969 20 N -0.750 5.750 21 C -0.228 4.228 22 H 0.054 0.946 23 C -0.064 4.064 24 N -0.983 5.983 25 Si 0.955 3.045 26 H -0.275 1.275 27 H -0.298 1.298 28 H -0.252 1.252 29 C 0.115 3.885 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.182 0.818 36 H 0.199 0.801 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.088 0.912 43 H 0.117 0.883 44 H 0.100 0.900 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.040 0.960 48 H 0.366 0.634 49 H 0.258 0.742 50 H 0.070 0.930 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 -2.303 -28.541 28.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 C -0.065 4.065 4 N -0.247 5.247 5 C -0.200 4.200 6 C -0.182 4.182 7 N -0.128 5.128 8 C 0.048 3.952 9 H 0.124 0.876 10 C -0.219 4.219 11 C -0.177 4.177 12 C 0.306 3.694 13 O -0.455 6.455 14 N -0.335 5.335 15 C -0.017 4.017 16 C -0.164 4.164 17 C -0.172 4.172 18 C 0.061 3.939 19 H 0.050 0.950 20 N -0.393 5.393 21 C -0.359 4.359 22 H 0.072 0.928 23 C -0.255 4.255 24 N -0.634 5.634 25 Si 0.783 3.217 26 H -0.201 1.201 27 H -0.225 1.225 28 H -0.176 1.176 29 C -0.009 4.009 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.199 0.801 36 H 0.216 0.784 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.107 0.893 43 H 0.135 0.865 44 H 0.119 0.881 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.059 0.941 48 H 0.199 0.801 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.090 -2.622 -28.894 29.033 hybrid contribution 0.075 -0.238 1.988 2.003 sum -1.015 -2.861 -26.906 27.077 Atomic orbital electron populations 1.21703 0.93609 1.03152 1.01590 1.20078 0.96734 0.86560 1.04665 1.23647 1.04048 0.97428 0.81402 1.70219 1.19542 1.05503 1.29460 1.22643 1.07287 0.96184 0.93887 1.23052 1.08127 0.90331 0.96648 1.45625 1.48445 1.11890 1.06847 1.21087 0.95718 1.01159 0.77192 0.87637 1.22194 0.98412 0.99503 1.01743 1.21978 0.98644 1.05531 0.91596 1.20769 0.82919 0.78047 0.87684 1.90698 1.28129 1.49481 1.77203 1.48123 1.10979 1.61603 1.12752 1.22102 0.82987 0.97887 0.98713 1.21890 1.02993 0.98053 0.93479 1.22083 0.97519 1.00698 0.96879 1.20522 0.95604 0.94759 0.83061 0.95041 1.42652 1.90061 1.04994 1.01615 1.18926 1.41129 0.90545 0.85317 0.92801 1.25511 1.02585 1.02454 0.94974 1.69878 1.59459 1.35955 0.98066 0.85405 0.78161 0.80736 0.77445 1.20099 1.22496 1.17645 1.21524 1.02001 0.96327 0.81010 0.92984 0.89915 0.93446 0.89296 0.88380 0.80101 0.78438 0.92262 0.90417 0.91042 0.86069 0.85676 0.89346 0.86486 0.88137 0.92106 0.91633 0.94117 0.80052 0.93320 0.91172 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.90 71.98 0.71 -1.20 16 2 C -0.04 -0.59 6.08 29.85 0.18 -0.41 16 3 C 0.20 3.76 7.16 138.13 0.99 4.75 16 4 N -0.53 -12.08 11.25 -188.13 -2.12 -14.19 16 5 C -0.05 -0.97 11.87 83.52 0.99 0.02 16 6 C -0.05 -0.72 10.70 83.09 0.89 0.17 16 7 N -0.45 -7.13 2.61 -491.91 -1.28 -8.41 16 8 C 0.15 2.30 2.64 44.99 0.12 2.42 16 9 H 0.11 1.75 6.48 -2.39 -0.02 1.74 16 10 C -0.16 -2.76 8.99 71.98 0.65 -2.12 16 11 C -0.14 -1.74 3.53 29.85 0.11 -1.64 16 12 C 0.52 11.08 7.42 87.66 0.65 11.73 16 13 O -0.58 -16.95 13.38 -3.01 -0.04 -16.99 16 14 N -0.60 -12.97 2.98 -819.82 -2.44 -15.41 16 15 C 0.10 1.45 6.34 86.36 0.55 2.00 16 16 C -0.13 -2.31 6.08 30.68 0.19 -2.12 16 17 C -0.13 -3.84 5.47 30.62 0.17 -3.67 16 18 C 0.17 6.04 2.91 44.91 0.13 6.17 16 19 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 20 N -0.75 -33.89 4.93 -323.33 -1.59 -35.48 16 21 C -0.23 -12.82 10.41 84.03 0.87 -11.94 16 22 H 0.05 3.35 8.06 -2.91 -0.02 3.32 16 23 C -0.06 -3.72 5.50 84.86 0.47 -3.26 16 24 N -0.98 -62.75 13.97 21.65 0.30 -62.45 16 25 Si 0.96 44.89 27.74 68.60 1.90 46.79 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 28 H -0.25 -10.67 6.52 99.48 0.65 -10.02 16 29 C 0.12 3.39 5.87 86.21 0.51 3.90 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 1.05 7.08 -2.39 -0.02 1.03 16 34 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.02 16 38 H 0.08 1.75 5.95 -2.39 -0.01 1.73 16 39 H 0.07 1.04 7.95 -2.39 -0.02 1.02 16 40 H 0.12 1.12 7.94 -2.39 -0.02 1.10 16 41 H 0.13 1.09 7.64 -2.39 -0.02 1.07 16 42 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.12 0.84 5.93 -2.39 -0.01 0.82 16 44 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 48 H 0.37 15.79 5.66 -92.71 -0.52 15.26 16 49 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 50 H 0.07 2.43 7.01 -2.39 -0.02 2.41 16 51 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -76.85 400.21 3.22 -73.62 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.33 Total: 27.73 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 8.16 Total: 4.79 kcal Atomic # 7 Polarization: -128.81 SS G_CDS: -7.13 Total: -135.94 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.04 Total: -16.99 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Total: -76.85 3.22 -73.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999199414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.736 kcal (2) G-P(sol) polarization free energy of solvation -76.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds