Wall clock time and date at job start Tue Mar 31 2020 18:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47268 * 2 1 4 4 N 1.30501 * 125.65203 * 270.04201 * 3 2 1 5 5 C 1.34132 * 109.26163 * 179.97438 * 4 3 2 6 6 C 1.34668 * 108.01496 * 359.73093 * 5 4 3 7 7 N 1.35048 * 125.65435 * 90.00220 * 3 2 1 8 8 C 1.46498 * 126.39077 * 0.03166 * 7 3 2 9 9 H 1.09001 * 109.47525 * 0.02562 * 8 7 3 10 10 C 1.53000 * 109.46753 * 120.00390 * 8 7 3 11 11 C 1.52996 * 109.47265 * 239.99903 * 8 7 3 12 12 C 1.50698 * 109.47586 * 175.00112 * 11 8 7 13 13 O 1.21287 * 119.99857 * 0.02562 * 12 11 8 14 14 N 1.34771 * 120.00285 * 179.97438 * 12 11 8 15 15 C 1.46919 * 120.63242 * 0.02562 * 14 12 11 16 16 C 1.53195 * 108.77845 * 233.58225 * 15 14 12 17 17 C 1.53039 * 109.31257 * 305.36660 * 16 15 14 18 18 C 1.53046 * 109.52798 * 61.36716 * 17 16 15 19 19 H 1.08998 * 109.49692 * 58.57850 * 18 17 16 20 20 N 1.46493 * 109.49651 * 178.67721 * 18 17 16 21 21 C 1.36943 * 120.00205 * 275.00123 * 20 18 17 22 22 H 1.08000 * 119.99674 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99941 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00353 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99698 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46996 * 59.99659 * 25 23 21 27 27 H 1.48505 * 109.46939 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47055 * 299.99669 * 25 23 21 29 29 C 1.46931 * 120.63145 * 179.97438 * 14 12 11 30 30 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46965 * 300.00125 * 1 2 3 32 32 H 1.09000 * 109.47418 * 59.99658 * 1 2 3 33 33 H 1.09001 * 109.46965 * 239.99874 * 2 1 3 34 34 H 1.08999 * 109.46899 * 120.00278 * 2 1 3 35 35 H 1.07991 * 125.98965 * 179.97438 * 5 4 3 36 36 H 1.08003 * 126.59068 * 180.28364 * 6 5 4 37 37 H 1.09005 * 109.47335 * 179.97438 * 10 8 7 38 38 H 1.08997 * 109.47251 * 299.99556 * 10 8 7 39 39 H 1.08999 * 109.47446 * 59.99834 * 10 8 7 40 40 H 1.09001 * 109.46802 * 55.00598 * 11 8 7 41 41 H 1.09000 * 109.47629 * 295.00816 * 11 8 7 42 42 H 1.08997 * 109.59005 * 113.79701 * 15 14 12 43 43 H 1.09002 * 109.70256 * 353.43937 * 15 14 12 44 44 H 1.08997 * 109.50026 * 185.40903 * 16 15 14 45 45 H 1.09006 * 109.51801 * 65.33221 * 16 15 14 46 46 H 1.09002 * 109.46050 * 181.38302 * 17 16 15 47 47 H 1.09004 * 109.46034 * 301.35518 * 17 16 15 48 48 H 0.97006 * 120.00270 * 95.00047 * 20 18 17 49 49 H 0.97000 * 119.99986 * 180.02562 * 24 23 21 50 50 H 1.08998 * 109.58959 * 246.20295 * 29 14 12 51 51 H 1.09003 * 109.58181 * 6.48778 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2851 2.1381 -1.0604 5 6 2.7138 3.3514 -0.6819 6 6 2.7215 3.3892 0.6642 7 7 2.2948 2.1629 1.0973 8 6 2.1449 1.7369 2.4910 9 1 1.7825 0.7093 2.5199 10 6 3.4992 1.8197 3.1980 11 6 1.1433 2.6514 3.1989 12 6 0.8961 2.1405 4.5949 13 8 1.4654 1.1433 4.9854 14 7 0.0432 2.7922 5.4099 15 6 -0.6534 4.0018 4.9515 16 6 -0.3988 5.1287 5.9576 17 6 -0.8069 4.6603 7.3562 18 6 0.0419 3.4522 7.7590 19 1 1.0968 3.7258 7.7391 20 7 -0.3275 3.0239 9.1104 21 6 0.2461 3.6239 10.1996 22 1 0.9711 4.4126 10.0622 23 6 -0.1035 3.2178 11.4801 24 7 -0.9866 2.2562 11.6474 25 14 0.6795 4.0358 12.9658 26 1 0.3686 5.4878 12.9524 27 1 0.1406 3.4260 14.2079 28 1 2.1513 3.8443 12.9179 29 6 -0.2085 2.3060 6.7734 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 2.9988 4.1579 -1.3411 36 1 3.0109 4.2256 1.2831 37 1 3.3877 1.5032 4.2351 38 1 4.2128 1.1682 2.6937 39 1 3.8619 2.8472 3.1691 40 1 0.2051 2.6611 2.6442 41 1 1.5466 3.6629 3.2483 42 1 -1.7235 3.8049 4.8867 43 1 -0.2757 4.2944 3.9718 44 1 -0.9872 6.0035 5.6807 45 1 0.6602 5.3869 5.9549 46 1 -0.6497 5.4688 8.0702 47 1 -1.8600 4.3791 7.3521 48 1 -0.9783 2.3153 9.2338 49 1 -1.2311 1.9727 12.5423 50 1 -1.2424 1.9710 6.8568 51 1 0.4633 1.4768 6.9954 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999199419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:42 Heat of formation + Delta-G solvation = 27.085605 kcal Electronic energy + Delta-G solvation = -29504.873437 eV Core-core repulsion = 25633.145980 eV Total energy + Delta-G solvation = -3871.727457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.41728 -40.30061 -37.73664 -35.79211 -34.61394 -34.07085 -32.36158 -31.48581 -30.96200 -29.06148 -28.80116 -27.77303 -25.21306 -24.23726 -23.88759 -23.08152 -22.16295 -21.28844 -20.19353 -19.50381 -18.86540 -17.83313 -17.27081 -16.60441 -16.00665 -15.80394 -15.33354 -15.17802 -14.84948 -14.44198 -14.22524 -14.12531 -14.09021 -13.70856 -13.64760 -13.55340 -13.36107 -13.06420 -12.95132 -12.88783 -12.55506 -12.31656 -12.06311 -11.91786 -11.80487 -11.55494 -11.34945 -11.15042 -11.04734 -10.95099 -10.73599 -10.50705 -10.44976 -10.21548 -10.15192 -9.88458 -9.79708 -9.68314 -8.97602 -8.55602 -8.55323 -7.06135 -5.83748 -3.13905 1.83645 2.39059 2.51149 2.96558 3.02616 3.39450 3.44267 3.45031 4.11772 4.14488 4.30041 4.40008 4.52765 4.57152 4.71667 4.81867 4.87396 4.96305 5.00685 5.06656 5.12542 5.13596 5.19389 5.31578 5.36011 5.41954 5.45813 5.50979 5.52803 5.59073 5.61110 5.66645 5.70533 5.71761 5.87101 5.91490 5.96873 6.04608 6.13291 6.17159 6.28800 6.44360 6.56457 6.58268 6.77495 6.94897 6.98884 7.38630 7.62480 7.93122 8.07901 8.34035 9.45240 9.99687 10.34528 11.38525 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.002303 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.930397 B =12154.839611 C =12287.621889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C 0.209 3.791 4 N -0.493 5.493 5 C -0.031 4.031 6 C -0.056 4.056 7 N -0.447 5.447 8 C 0.146 3.854 9 H 0.111 0.889 10 C -0.166 4.166 11 C -0.149 4.149 12 C 0.518 3.482 13 O -0.539 6.539 14 N -0.601 5.601 15 C 0.106 3.894 16 C -0.133 4.133 17 C -0.138 4.138 18 C 0.169 3.831 19 H 0.049 0.951 20 N -0.721 5.721 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.106 3.894 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.384 0.616 49 H 0.257 0.743 50 H 0.066 0.934 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.995 1.537 -23.627 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.053 4.053 4 N -0.212 5.212 5 C -0.179 4.179 6 C -0.189 4.189 7 N -0.130 5.130 8 C 0.043 3.957 9 H 0.129 0.871 10 C -0.224 4.224 11 C -0.190 4.190 12 C 0.305 3.695 13 O -0.417 6.417 14 N -0.333 5.333 15 C -0.017 4.017 16 C -0.172 4.172 17 C -0.179 4.179 18 C 0.058 3.942 19 H 0.067 0.933 20 N -0.362 5.362 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.017 4.017 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.185 0.815 36 H 0.188 0.812 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.218 0.782 49 H 0.067 0.933 50 H 0.084 0.916 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.291 0.782 -23.916 24.155 hybrid contribution 0.193 0.937 1.795 2.034 sum 3.484 1.719 -22.121 22.460 Atomic orbital electron populations 1.21739 0.93865 1.02419 1.02441 1.19988 0.96514 0.87500 1.04047 1.23272 1.04003 0.96665 0.81365 1.70235 1.18377 1.04309 1.28285 1.22249 1.06689 0.96237 0.92757 1.22616 1.09545 0.89981 0.96718 1.45632 1.48634 1.11634 1.07114 1.21190 0.97343 0.99789 0.77373 0.87072 1.22288 0.94286 1.02582 1.03213 1.22007 1.01195 1.01299 0.94478 1.20128 0.79016 0.83855 0.86498 1.90700 1.49006 1.25731 1.76217 1.48099 1.43401 1.27284 1.14553 1.21807 0.97282 0.84913 0.97724 1.21934 1.01881 0.96976 0.96420 1.22302 1.00710 1.00715 0.94162 1.20465 0.96984 0.91177 0.85531 0.93250 1.42299 1.50850 1.44138 0.98892 1.19142 1.18695 1.14459 0.84954 0.91228 1.24753 0.99569 0.98910 0.97475 1.69647 1.35534 1.31113 1.21616 0.86263 0.78763 0.78674 0.82443 1.21238 1.21625 1.21201 1.22058 1.01765 0.98688 0.79178 0.91500 0.92867 0.91871 0.88747 0.90302 0.81539 0.81210 0.88146 0.91949 0.92228 0.88328 0.88092 0.91157 0.90410 0.91228 0.91848 0.91465 0.92422 0.78173 0.93343 0.91577 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.04 -0.34 6.08 -27.89 -0.17 -0.51 16 3 C 0.21 2.23 7.16 -155.41 -1.11 1.12 16 4 N -0.49 -6.07 11.25 -10.82 -0.12 -6.19 16 5 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 6 C -0.06 -0.50 10.70 -16.56 -0.18 -0.68 16 7 N -0.45 -4.28 2.61 -106.84 -0.28 -4.56 16 8 C 0.15 1.34 2.64 -67.93 -0.18 1.17 16 9 H 0.11 1.07 6.48 -51.93 -0.34 0.73 16 10 C -0.17 -1.60 9.00 37.16 0.33 -1.27 16 11 C -0.15 -1.31 3.52 -27.89 -0.10 -1.41 16 12 C 0.52 6.50 7.42 -10.99 -0.08 6.42 16 13 O -0.54 -8.50 13.38 5.55 0.07 -8.43 16 14 N -0.60 -7.74 2.97 -172.75 -0.51 -8.25 16 15 C 0.11 1.05 6.34 -3.71 -0.02 1.03 16 16 C -0.13 -1.52 6.08 -26.61 -0.16 -1.68 16 17 C -0.14 -2.20 5.47 -26.69 -0.15 -2.35 16 18 C 0.17 3.17 2.92 -67.79 -0.20 2.98 16 19 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 20 N -0.72 -17.34 5.12 -53.29 -0.27 -17.62 16 21 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 25 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 29 C 0.11 1.73 5.91 -3.69 -0.02 1.71 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.57 7.08 -51.93 -0.37 0.20 16 35 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 36 H 0.17 1.11 8.06 -52.48 -0.42 0.68 16 37 H 0.10 1.18 5.95 -51.93 -0.31 0.87 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.52 7.96 -51.93 -0.41 0.10 16 40 H 0.10 0.77 7.94 -51.93 -0.41 0.36 16 41 H 0.10 0.75 7.64 -51.93 -0.40 0.35 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.57 5.95 -51.93 -0.31 0.26 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.38 9.84 7.80 -40.82 -0.32 9.52 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 51 H 0.09 1.75 7.00 -51.93 -0.36 1.39 16 LS Contribution 403.37 15.07 6.08 6.08 Total: -1.00 -32.32 403.37 -10.14 -42.46 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.69 Total: 8.13 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.12 Total: -1.77 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.46 Total: -63.43 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.07 Total: -8.43 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.32 -10.14 -42.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999199419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.548 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds