Wall clock time and date at job start Tue Mar 31 2020 18:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47268 * 2 1 4 4 N 1.30501 * 125.65203 * 270.04201 * 3 2 1 5 5 C 1.34132 * 109.26163 * 179.97438 * 4 3 2 6 6 C 1.34668 * 108.01496 * 359.73093 * 5 4 3 7 7 N 1.35048 * 125.65435 * 90.00220 * 3 2 1 8 8 C 1.46498 * 126.39077 * 0.03166 * 7 3 2 9 9 H 1.09001 * 109.47525 * 0.02562 * 8 7 3 10 10 C 1.53000 * 109.46753 * 120.00390 * 8 7 3 11 11 C 1.52996 * 109.47265 * 239.99903 * 8 7 3 12 12 C 1.50698 * 109.47586 * 175.00112 * 11 8 7 13 13 O 1.21287 * 119.99857 * 0.02562 * 12 11 8 14 14 N 1.34771 * 120.00285 * 179.97438 * 12 11 8 15 15 C 1.46919 * 120.63242 * 0.02562 * 14 12 11 16 16 C 1.53195 * 108.77845 * 233.58225 * 15 14 12 17 17 C 1.53039 * 109.31257 * 305.36660 * 16 15 14 18 18 C 1.53046 * 109.52798 * 61.36716 * 17 16 15 19 19 H 1.08998 * 109.49692 * 58.57850 * 18 17 16 20 20 N 1.46493 * 109.49651 * 178.67721 * 18 17 16 21 21 C 1.36943 * 120.00205 * 275.00123 * 20 18 17 22 22 H 1.08000 * 119.99674 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99941 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00353 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99698 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46996 * 59.99659 * 25 23 21 27 27 H 1.48505 * 109.46939 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47055 * 299.99669 * 25 23 21 29 29 C 1.46931 * 120.63145 * 179.97438 * 14 12 11 30 30 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46965 * 300.00125 * 1 2 3 32 32 H 1.09000 * 109.47418 * 59.99658 * 1 2 3 33 33 H 1.09001 * 109.46965 * 239.99874 * 2 1 3 34 34 H 1.08999 * 109.46899 * 120.00278 * 2 1 3 35 35 H 1.07991 * 125.98965 * 179.97438 * 5 4 3 36 36 H 1.08003 * 126.59068 * 180.28364 * 6 5 4 37 37 H 1.09005 * 109.47335 * 179.97438 * 10 8 7 38 38 H 1.08997 * 109.47251 * 299.99556 * 10 8 7 39 39 H 1.08999 * 109.47446 * 59.99834 * 10 8 7 40 40 H 1.09001 * 109.46802 * 55.00598 * 11 8 7 41 41 H 1.09000 * 109.47629 * 295.00816 * 11 8 7 42 42 H 1.08997 * 109.59005 * 113.79701 * 15 14 12 43 43 H 1.09002 * 109.70256 * 353.43937 * 15 14 12 44 44 H 1.08997 * 109.50026 * 185.40903 * 16 15 14 45 45 H 1.09006 * 109.51801 * 65.33221 * 16 15 14 46 46 H 1.09002 * 109.46050 * 181.38302 * 17 16 15 47 47 H 1.09004 * 109.46034 * 301.35518 * 17 16 15 48 48 H 0.97006 * 120.00270 * 95.00047 * 20 18 17 49 49 H 0.97000 * 119.99986 * 180.02562 * 24 23 21 50 50 H 1.08998 * 109.58959 * 246.20295 * 29 14 12 51 51 H 1.09003 * 109.58181 * 6.48778 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2851 2.1381 -1.0604 5 6 2.7138 3.3514 -0.6819 6 6 2.7215 3.3892 0.6642 7 7 2.2948 2.1629 1.0973 8 6 2.1449 1.7369 2.4910 9 1 1.7825 0.7093 2.5199 10 6 3.4992 1.8197 3.1980 11 6 1.1433 2.6514 3.1989 12 6 0.8961 2.1405 4.5949 13 8 1.4654 1.1433 4.9854 14 7 0.0432 2.7922 5.4099 15 6 -0.6534 4.0018 4.9515 16 6 -0.3988 5.1287 5.9576 17 6 -0.8069 4.6603 7.3562 18 6 0.0419 3.4522 7.7590 19 1 1.0968 3.7258 7.7391 20 7 -0.3275 3.0239 9.1104 21 6 0.2461 3.6239 10.1996 22 1 0.9711 4.4126 10.0622 23 6 -0.1035 3.2178 11.4801 24 7 -0.9866 2.2562 11.6474 25 14 0.6795 4.0358 12.9658 26 1 0.3686 5.4878 12.9524 27 1 0.1406 3.4260 14.2079 28 1 2.1513 3.8443 12.9179 29 6 -0.2085 2.3060 6.7734 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 2.9988 4.1579 -1.3411 36 1 3.0109 4.2256 1.2831 37 1 3.3877 1.5032 4.2351 38 1 4.2128 1.1682 2.6937 39 1 3.8619 2.8472 3.1691 40 1 0.2051 2.6611 2.6442 41 1 1.5466 3.6629 3.2483 42 1 -1.7235 3.8049 4.8867 43 1 -0.2757 4.2944 3.9718 44 1 -0.9872 6.0035 5.6807 45 1 0.6602 5.3869 5.9549 46 1 -0.6497 5.4688 8.0702 47 1 -1.8600 4.3791 7.3521 48 1 -0.9783 2.3153 9.2338 49 1 -1.2311 1.9727 12.5423 50 1 -1.2424 1.9710 6.8568 51 1 0.4633 1.4768 6.9954 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999199419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:41 Heat of formation + Delta-G solvation = 8.302979 kcal Electronic energy + Delta-G solvation = -29505.687913 eV Core-core repulsion = 25633.145980 eV Total energy + Delta-G solvation = -3872.541933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.14492 -41.34244 -38.93078 -36.63639 -36.22433 -34.69053 -33.90134 -32.78389 -31.91460 -30.37285 -29.51221 -28.87136 -26.34247 -25.74070 -24.78332 -23.93721 -23.39113 -22.11393 -21.41234 -20.33873 -19.90045 -19.15554 -18.65530 -17.52175 -16.96638 -16.80881 -16.58196 -16.22168 -15.83716 -15.62388 -15.43049 -15.20612 -15.06365 -14.83233 -14.71810 -14.48202 -14.36841 -14.25132 -13.92224 -13.85072 -13.62334 -13.18332 -12.99001 -12.90506 -12.83709 -12.55854 -12.52006 -12.34858 -12.25709 -12.17632 -12.11287 -11.95309 -11.83900 -11.70724 -11.63103 -11.02505 -10.91337 -10.77904 -10.57129 -9.69195 -9.25658 -9.04089 -7.96880 -5.26293 1.12640 1.45243 1.48154 1.51312 1.54432 1.61665 2.08115 2.22278 2.55125 3.35626 3.37295 3.43576 3.54118 3.67891 3.80180 3.88986 4.00760 4.01819 4.10034 4.16745 4.25187 4.27217 4.36433 4.36632 4.40635 4.44815 4.51409 4.59037 4.66893 4.69427 4.75844 4.80916 4.83780 4.86799 4.88199 5.00036 5.06259 5.09283 5.15952 5.17386 5.29542 5.39816 5.41168 5.45812 5.50086 5.58707 5.90155 6.24792 6.26976 6.39480 7.08897 7.20413 7.30814 8.04258 8.27614 9.26140 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.002303 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.930397 B =12154.839611 C =12287.621889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.043 4.043 3 C 0.197 3.803 4 N -0.528 5.528 5 C -0.053 4.053 6 C -0.048 4.048 7 N -0.445 5.445 8 C 0.151 3.849 9 H 0.104 0.896 10 C -0.161 4.161 11 C -0.136 4.136 12 C 0.516 3.484 13 O -0.577 6.577 14 N -0.601 5.601 15 C 0.104 3.896 16 C -0.124 4.124 17 C -0.130 4.130 18 C 0.168 3.832 19 H 0.033 0.967 20 N -0.736 5.736 21 C -0.239 4.239 22 H 0.073 0.927 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.971 3.029 26 H -0.276 1.276 27 H -0.296 1.296 28 H -0.280 1.280 29 C 0.120 3.880 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.182 0.818 36 H 0.200 0.800 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.054 0.946 48 H 0.373 0.627 49 H 0.251 0.749 50 H 0.067 0.933 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 3.554 -25.511 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.066 4.066 4 N -0.247 5.247 5 C -0.200 4.200 6 C -0.181 4.181 7 N -0.128 5.128 8 C 0.048 3.952 9 H 0.122 0.878 10 C -0.219 4.219 11 C -0.176 4.176 12 C 0.305 3.695 13 O -0.457 6.457 14 N -0.334 5.334 15 C -0.018 4.018 16 C -0.163 4.163 17 C -0.170 4.170 18 C 0.059 3.941 19 H 0.051 0.949 20 N -0.376 5.376 21 C -0.371 4.371 22 H 0.091 0.909 23 C -0.266 4.266 24 N -0.619 5.619 25 Si 0.800 3.200 26 H -0.202 1.202 27 H -0.222 1.222 28 H -0.207 1.207 29 C -0.004 4.004 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.200 0.800 36 H 0.217 0.783 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.101 0.899 43 H 0.136 0.864 44 H 0.118 0.882 45 H 0.083 0.917 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.205 0.795 49 H 0.060 0.940 50 H 0.085 0.915 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.450 2.851 -25.869 26.253 hybrid contribution 0.199 0.306 2.291 2.320 sum 3.649 3.157 -23.578 24.067 Atomic orbital electron populations 1.21692 0.93210 1.03155 1.01824 1.20075 0.97034 0.86602 1.04453 1.23629 1.04100 0.97404 0.81427 1.70213 1.19546 1.05511 1.29433 1.22649 1.07237 0.96227 0.93891 1.23063 1.08181 0.90219 0.96652 1.45627 1.48538 1.11814 1.06807 1.21082 0.97138 0.99741 0.77232 0.87784 1.22197 0.94687 1.03261 1.01713 1.21961 1.02133 1.02003 0.91483 1.20791 0.77891 0.83163 0.87668 1.90700 1.50242 1.27537 1.77197 1.48137 1.43892 1.28404 1.12929 1.22085 0.98047 0.82792 0.98855 1.21887 1.02445 0.98524 0.93400 1.22096 0.99805 0.98212 0.96907 1.20637 0.96450 0.93215 0.83835 0.94905 1.42494 1.50590 1.43931 1.00587 1.19491 1.17820 1.13786 0.85977 0.90892 1.25543 1.00767 1.00077 1.00245 1.69803 1.37454 1.32979 1.21621 0.85250 0.77900 0.78025 0.78826 1.20176 1.22183 1.20653 1.21570 1.00944 0.96816 0.81095 0.90141 0.93105 0.92717 0.88601 0.89627 0.80042 0.78342 0.90473 0.92176 0.90879 0.86318 0.85528 0.89916 0.86363 0.88187 0.91660 0.93761 0.92723 0.79508 0.93982 0.91519 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.89 71.98 0.71 -1.16 16 2 C -0.04 -0.65 6.08 29.84 0.18 -0.47 16 3 C 0.20 3.89 7.16 138.12 0.99 4.87 16 4 N -0.53 -12.31 11.25 -188.14 -2.12 -14.43 16 5 C -0.05 -0.98 11.87 83.52 0.99 0.01 16 6 C -0.05 -0.72 10.70 83.09 0.89 0.17 16 7 N -0.45 -7.39 2.61 -491.92 -1.28 -8.67 16 8 C 0.15 2.43 2.64 44.99 0.12 2.55 16 9 H 0.10 1.86 6.48 -2.39 -0.02 1.84 16 10 C -0.16 -2.84 9.00 71.98 0.65 -2.19 16 11 C -0.14 -1.88 3.52 29.85 0.11 -1.77 16 12 C 0.52 11.95 7.42 87.66 0.65 12.60 16 13 O -0.58 -18.12 13.38 -3.05 -0.04 -18.16 16 14 N -0.60 -14.27 2.97 -818.83 -2.43 -16.70 16 15 C 0.10 1.63 6.34 86.36 0.55 2.18 16 16 C -0.12 -2.39 6.08 30.67 0.19 -2.20 16 17 C -0.13 -4.00 5.47 30.62 0.17 -3.83 16 18 C 0.17 6.34 2.92 45.08 0.13 6.48 16 19 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 20 N -0.74 -36.42 5.12 -322.51 -1.65 -38.07 16 21 C -0.24 -13.09 9.93 84.03 0.83 -12.26 16 22 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 23 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 24 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 25 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 28 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 29 C 0.12 3.94 5.91 86.37 0.51 4.45 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.15 7.08 -2.39 -0.02 1.14 16 35 H 0.18 2.53 8.06 -2.92 -0.02 2.51 16 36 H 0.20 1.66 8.06 -2.91 -0.02 1.63 16 37 H 0.08 1.78 5.95 -2.38 -0.01 1.77 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.07 7.96 -2.39 -0.02 1.05 16 40 H 0.12 1.28 7.94 -2.39 -0.02 1.26 16 41 H 0.13 1.18 7.64 -2.39 -0.02 1.17 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.12 1.00 5.95 -2.39 -0.01 0.98 16 44 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.37 19.86 7.80 -92.70 -0.72 19.14 16 49 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 50 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.06 2.53 7.00 -2.39 -0.02 2.51 16 Total: -1.00 -73.23 403.37 3.10 -70.13 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.19 Total: 30.96 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 8.13 Total: 5.68 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -7.20 Total: -136.39 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.04 Total: -18.16 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -73.23 3.10 -70.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999199419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.432 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds