Wall clock time and date at job start Tue Mar 31 2020 20:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.50703 * 109.47010 * 119.99883 * 2 1 3 5 5 N 1.30500 * 125.64699 * 299.95807 * 4 2 1 6 6 C 1.34125 * 109.25519 * 180.02562 * 5 4 2 7 7 C 1.34676 * 108.02266 * 359.73351 * 6 5 4 8 8 N 1.35038 * 125.65078 * 120.00237 * 4 2 1 9 9 C 1.46503 * 126.39956 * 359.95956 * 8 4 2 10 10 C 1.52995 * 109.46883 * 84.99927 * 9 8 4 11 11 C 1.50704 * 109.47210 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99847 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00168 * 180.02562 * 11 10 9 14 14 C 1.46931 * 120.63030 * 359.97438 * 13 11 10 15 15 C 1.53200 * 108.77279 * 126.37310 * 14 13 11 16 16 C 1.53039 * 109.31160 * 54.63574 * 15 14 13 17 17 C 1.53046 * 109.52798 * 298.64112 * 16 15 14 18 18 H 1.08994 * 109.49581 * 301.40708 * 17 16 15 19 19 N 1.46501 * 109.49630 * 181.31171 * 17 16 15 20 20 C 1.36935 * 119.99704 * 155.00148 * 19 17 16 21 21 H 1.07997 * 120.00376 * 359.97438 * 20 19 17 22 22 C 1.38819 * 119.99849 * 179.97438 * 20 19 17 23 23 N 1.31625 * 119.99519 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99895 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47274 * 60.00192 * 24 22 20 26 26 H 1.48509 * 109.46750 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47399 * 299.99689 * 24 22 20 28 28 C 1.46928 * 120.63178 * 179.97438 * 13 11 10 29 29 H 1.09003 * 109.47249 * 300.00235 * 1 2 3 30 30 H 1.09005 * 109.47316 * 60.00209 * 1 2 3 31 31 H 1.09004 * 109.47360 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46777 * 239.99744 * 2 1 3 33 33 H 1.09005 * 109.46851 * 300.00076 * 3 2 1 34 34 H 1.08992 * 109.47386 * 59.99309 * 3 2 1 35 35 H 1.08994 * 109.47448 * 180.02562 * 3 2 1 36 36 H 1.08004 * 125.99175 * 180.02562 * 6 5 4 37 37 H 1.07999 * 126.59537 * 180.28468 * 7 6 5 38 38 H 1.09002 * 109.46752 * 325.00452 * 9 8 4 39 39 H 1.08991 * 109.47112 * 205.00572 * 9 8 4 40 40 H 1.09002 * 109.46999 * 60.00676 * 10 9 8 41 41 H 1.08996 * 109.47783 * 300.00714 * 10 9 8 42 42 H 1.08998 * 109.58425 * 6.59260 * 14 13 11 43 43 H 1.08995 * 109.70793 * 246.22878 * 14 13 11 44 44 H 1.08997 * 109.49280 * 294.68615 * 15 14 13 45 45 H 1.08992 * 109.49396 * 174.58854 * 15 14 13 46 46 H 1.09002 * 109.46050 * 58.65698 * 16 15 14 47 47 H 1.09004 * 109.46034 * 178.62914 * 16 15 14 48 48 H 0.97005 * 119.99942 * 334.99860 * 19 17 16 49 49 H 0.97001 * 119.99300 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.58766 * 353.41859 * 28 13 11 51 51 H 1.09002 * 109.58364 * 113.69954 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7865 -0.3615 2.4637 6 6 2.3941 -1.2202 3.2958 7 6 3.0361 -2.1395 2.5500 8 7 2.8120 -1.8129 1.2396 9 6 3.3179 -2.5297 0.0664 10 6 4.6090 -1.8674 -0.4183 11 6 5.1292 -2.6043 -1.6256 12 8 4.5266 -3.5650 -2.0557 13 7 6.2643 -2.1964 -2.2267 14 6 7.0056 -1.0346 -1.7170 15 6 8.4605 -1.4470 -1.4719 16 6 9.0392 -2.0483 -2.7547 17 6 8.2414 -3.2964 -3.1398 18 1 8.2821 -4.0197 -2.3255 19 7 8.8153 -3.8892 -4.3504 20 6 8.6442 -5.2234 -4.6066 21 1 8.0866 -5.8388 -3.9162 22 6 9.1875 -5.7851 -5.7540 23 7 9.8666 -5.0350 -6.5958 24 14 8.9547 -7.6053 -6.1032 25 1 7.5047 -7.9078 -6.2077 26 1 9.6260 -7.9539 -7.3812 27 1 9.5480 -8.4010 -4.9988 28 6 6.7842 -2.9049 -3.4042 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8898 35 1 3.1299 1.4425 -0.0005 36 1 2.3687 -1.1838 4.3750 37 1 3.6181 -2.9727 2.9153 38 1 2.5725 -2.4974 -0.7283 39 1 3.5196 -3.5670 0.3334 40 1 5.3544 -1.8996 0.3764 41 1 4.4073 -0.8300 -0.6853 42 1 6.5588 -0.6979 -0.7816 43 1 6.9729 -0.2277 -2.4490 44 1 8.4990 -2.1878 -0.6733 45 1 9.0433 -0.5717 -1.1853 46 1 8.9776 -1.3154 -3.5592 47 1 10.0818 -2.3203 -2.5902 48 1 9.3164 -3.3365 -4.9705 49 1 10.2465 -5.4275 -7.3973 50 1 6.1912 -3.8020 -3.5822 51 1 6.7309 -2.2528 -4.2760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000364133.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:49 Heat of formation + Delta-G solvation = 23.166701 kcal Electronic energy + Delta-G solvation = -29258.966201 eV Core-core repulsion = 25387.068807 eV Total energy + Delta-G solvation = -3871.897394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.38184 -40.13040 -37.55640 -35.63383 -35.02576 -34.56471 -32.43573 -31.36507 -30.69023 -28.99165 -28.28852 -27.43674 -25.82791 -24.31056 -23.77585 -22.98907 -21.98547 -21.41636 -20.30633 -19.29045 -18.87967 -17.76321 -17.15169 -16.63826 -16.08012 -15.97271 -15.31444 -15.14260 -14.76883 -14.55834 -14.32750 -14.13953 -13.93510 -13.71630 -13.61184 -13.42349 -13.37172 -13.17645 -12.77957 -12.60523 -12.50117 -12.38760 -12.28303 -11.82296 -11.68989 -11.49623 -11.43149 -11.21476 -11.11737 -10.88431 -10.74737 -10.66404 -10.28899 -10.13158 -9.98755 -9.90660 -9.78278 -9.62849 -9.13526 -8.55869 -8.46952 -7.06368 -5.83872 -3.14102 1.82299 2.43645 2.59676 2.96713 3.12939 3.41916 3.46087 3.47535 4.07470 4.32170 4.34127 4.40584 4.52413 4.56572 4.77317 4.79493 4.83447 4.94296 4.96669 5.01204 5.09801 5.15344 5.27141 5.38581 5.41270 5.44508 5.45150 5.45958 5.53410 5.56317 5.57164 5.67194 5.71419 5.82382 5.93668 5.95022 5.95871 6.07559 6.12700 6.16399 6.25760 6.39654 6.58237 6.60677 6.74155 6.91117 6.96028 7.49692 7.65552 7.92892 8.18029 8.34244 9.45956 9.99328 10.34499 11.38199 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017712 B = 0.002372 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.445821 B =11802.758262 C =12195.134494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.012 4.012 3 C -0.139 4.139 4 C 0.213 3.787 5 N -0.488 5.488 6 C -0.031 4.031 7 C -0.058 4.058 8 N -0.454 5.454 9 C 0.118 3.882 10 C -0.155 4.155 11 C 0.514 3.486 12 O -0.542 6.542 13 N -0.602 5.602 14 C 0.106 3.894 15 C -0.130 4.130 16 C -0.127 4.127 17 C 0.169 3.831 18 H 0.050 0.950 19 N -0.718 5.718 20 C -0.245 4.245 21 H 0.071 0.929 22 C -0.010 4.010 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.091 3.909 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.386 0.614 49 H 0.257 0.743 50 H 0.091 0.909 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.543 13.663 16.599 24.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 C -0.197 4.197 4 C -0.049 4.049 5 N -0.206 5.206 6 C -0.179 4.179 7 C -0.190 4.190 8 N -0.136 5.136 9 C -0.005 4.005 10 C -0.196 4.196 11 C 0.301 3.699 12 O -0.420 6.420 13 N -0.336 5.336 14 C -0.018 4.018 15 C -0.169 4.169 16 C -0.165 4.165 17 C 0.058 3.942 18 H 0.068 0.932 19 N -0.358 5.358 20 C -0.376 4.376 21 H 0.089 0.911 22 C -0.206 4.206 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.033 4.033 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.185 0.815 37 H 0.190 0.810 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.220 0.780 49 H 0.066 0.934 50 H 0.109 0.891 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.275 13.527 16.456 25.099 hybrid contribution 0.793 -1.604 -0.601 1.887 sum -12.482 11.923 15.855 23.438 Atomic orbital electron populations 1.21775 0.93033 1.02211 1.02728 1.19590 0.96798 0.95834 0.90983 1.21772 1.00941 0.94173 1.02787 1.23227 0.97049 0.89028 0.95632 1.70176 1.23833 1.27623 0.99004 1.22271 1.01508 0.94605 0.99547 1.22751 1.08634 1.04757 0.82889 1.45508 1.38372 1.22876 1.06817 1.21616 0.95839 0.96552 0.86464 1.22015 0.98227 1.01414 0.97937 1.20196 0.80955 0.84470 0.84321 1.90739 1.57716 1.27907 1.65660 1.48290 1.23612 1.30668 1.30991 1.21767 0.92741 0.88040 0.99220 1.21881 0.94872 1.01085 0.99039 1.21835 1.00267 0.98085 0.96328 1.20476 0.89810 0.92855 0.91070 0.93186 1.42369 1.63003 1.07667 1.22797 1.19210 1.28687 0.85223 1.04500 0.91129 1.24755 1.00410 0.98121 0.97298 1.69653 1.40059 1.34853 1.13378 0.86261 0.77733 0.84950 0.77229 1.21085 1.21625 1.21189 1.22843 0.98140 0.97172 0.85132 0.91368 0.91775 0.92757 0.90027 0.91768 0.91334 0.92779 0.81482 0.80971 0.88094 0.87848 0.88217 0.88414 0.90445 0.91176 0.91609 0.90896 0.91970 0.91320 0.78034 0.93355 0.89060 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.18 37.16 0.34 -0.75 16 2 C -0.01 -0.10 3.25 -91.77 -0.30 -0.40 16 3 C -0.14 -1.04 9.18 37.16 0.34 -0.70 16 4 C 0.21 2.25 6.41 -155.42 -1.00 1.25 16 5 N -0.49 -5.85 11.25 -10.81 -0.12 -5.98 16 6 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 7 C -0.06 -0.54 11.58 -16.56 -0.19 -0.73 16 8 N -0.45 -4.45 2.75 -113.91 -0.31 -4.76 16 9 C 0.12 1.11 4.98 -4.04 -0.02 1.09 16 10 C -0.16 -1.42 4.37 -27.88 -0.12 -1.54 16 11 C 0.51 6.99 7.70 -10.99 -0.08 6.90 16 12 O -0.54 -9.56 15.40 5.55 0.09 -9.47 16 13 N -0.60 -8.28 2.97 -172.76 -0.51 -8.79 16 14 C 0.11 1.06 6.34 -3.70 -0.02 1.04 16 15 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 16 C -0.13 -1.87 5.36 -26.69 -0.14 -2.02 16 17 C 0.17 3.20 2.92 -67.81 -0.20 3.00 16 18 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 19 N -0.72 -17.35 5.12 -53.31 -0.27 -17.63 16 20 C -0.25 -6.71 9.93 -15.06 -0.15 -6.86 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 24 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 C 0.09 1.63 6.02 -3.71 -0.02 1.61 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.64 6.85 -51.93 -0.36 0.29 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.10 0.97 7.24 -51.93 -0.38 0.60 16 39 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 40 H 0.10 0.81 7.69 -51.93 -0.40 0.41 16 41 H 0.10 0.77 7.94 -51.93 -0.41 0.36 16 42 H 0.08 0.58 5.93 -51.93 -0.31 0.28 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.39 9.83 7.80 -40.82 -0.32 9.51 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 50 H 0.09 1.93 7.00 -51.93 -0.36 1.56 16 51 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 408.67 15.07 6.16 6.16 Total: -1.00 -33.06 408.67 -10.15 -43.21 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -8.84 Total: 7.38 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.04 Total: -0.57 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: -0.50 Total: -64.03 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.06 -10.15 -43.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000364133.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.381 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds