Wall clock time and date at job start Tue Mar 31 2020 20:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.50703 * 109.47010 * 119.99883 * 2 1 3 5 5 N 1.30500 * 125.64699 * 299.95807 * 4 2 1 6 6 C 1.34125 * 109.25519 * 180.02562 * 5 4 2 7 7 C 1.34676 * 108.02266 * 359.73351 * 6 5 4 8 8 N 1.35038 * 125.65078 * 120.00237 * 4 2 1 9 9 C 1.46503 * 126.39956 * 359.95956 * 8 4 2 10 10 C 1.52995 * 109.46883 * 84.99927 * 9 8 4 11 11 C 1.50704 * 109.47210 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99847 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00168 * 180.02562 * 11 10 9 14 14 C 1.46931 * 120.63030 * 359.97438 * 13 11 10 15 15 C 1.53200 * 108.77279 * 126.37310 * 14 13 11 16 16 C 1.53039 * 109.31160 * 54.63574 * 15 14 13 17 17 C 1.53046 * 109.52798 * 298.64112 * 16 15 14 18 18 H 1.08994 * 109.49581 * 301.40708 * 17 16 15 19 19 N 1.46501 * 109.49630 * 181.31171 * 17 16 15 20 20 C 1.36935 * 119.99704 * 155.00148 * 19 17 16 21 21 H 1.07997 * 120.00376 * 359.97438 * 20 19 17 22 22 C 1.38819 * 119.99849 * 179.97438 * 20 19 17 23 23 N 1.31625 * 119.99519 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99895 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47274 * 60.00192 * 24 22 20 26 26 H 1.48509 * 109.46750 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47399 * 299.99689 * 24 22 20 28 28 C 1.46928 * 120.63178 * 179.97438 * 13 11 10 29 29 H 1.09003 * 109.47249 * 300.00235 * 1 2 3 30 30 H 1.09005 * 109.47316 * 60.00209 * 1 2 3 31 31 H 1.09004 * 109.47360 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46777 * 239.99744 * 2 1 3 33 33 H 1.09005 * 109.46851 * 300.00076 * 3 2 1 34 34 H 1.08992 * 109.47386 * 59.99309 * 3 2 1 35 35 H 1.08994 * 109.47448 * 180.02562 * 3 2 1 36 36 H 1.08004 * 125.99175 * 180.02562 * 6 5 4 37 37 H 1.07999 * 126.59537 * 180.28468 * 7 6 5 38 38 H 1.09002 * 109.46752 * 325.00452 * 9 8 4 39 39 H 1.08991 * 109.47112 * 205.00572 * 9 8 4 40 40 H 1.09002 * 109.46999 * 60.00676 * 10 9 8 41 41 H 1.08996 * 109.47783 * 300.00714 * 10 9 8 42 42 H 1.08998 * 109.58425 * 6.59260 * 14 13 11 43 43 H 1.08995 * 109.70793 * 246.22878 * 14 13 11 44 44 H 1.08997 * 109.49280 * 294.68615 * 15 14 13 45 45 H 1.08992 * 109.49396 * 174.58854 * 15 14 13 46 46 H 1.09002 * 109.46050 * 58.65698 * 16 15 14 47 47 H 1.09004 * 109.46034 * 178.62914 * 16 15 14 48 48 H 0.97005 * 119.99942 * 334.99860 * 19 17 16 49 49 H 0.97001 * 119.99300 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.58766 * 353.41859 * 28 13 11 51 51 H 1.09002 * 109.58364 * 113.69954 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7865 -0.3615 2.4637 6 6 2.3941 -1.2202 3.2958 7 6 3.0361 -2.1395 2.5500 8 7 2.8120 -1.8129 1.2396 9 6 3.3179 -2.5297 0.0664 10 6 4.6090 -1.8674 -0.4183 11 6 5.1292 -2.6043 -1.6256 12 8 4.5266 -3.5650 -2.0557 13 7 6.2643 -2.1964 -2.2267 14 6 7.0056 -1.0346 -1.7170 15 6 8.4605 -1.4470 -1.4719 16 6 9.0392 -2.0483 -2.7547 17 6 8.2414 -3.2964 -3.1398 18 1 8.2821 -4.0197 -2.3255 19 7 8.8153 -3.8892 -4.3504 20 6 8.6442 -5.2234 -4.6066 21 1 8.0866 -5.8388 -3.9162 22 6 9.1875 -5.7851 -5.7540 23 7 9.8666 -5.0350 -6.5958 24 14 8.9547 -7.6053 -6.1032 25 1 7.5047 -7.9078 -6.2077 26 1 9.6260 -7.9539 -7.3812 27 1 9.5480 -8.4010 -4.9988 28 6 6.7842 -2.9049 -3.4042 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8898 35 1 3.1299 1.4425 -0.0005 36 1 2.3687 -1.1838 4.3750 37 1 3.6181 -2.9727 2.9153 38 1 2.5725 -2.4974 -0.7283 39 1 3.5196 -3.5670 0.3334 40 1 5.3544 -1.8996 0.3764 41 1 4.4073 -0.8300 -0.6853 42 1 6.5588 -0.6979 -0.7816 43 1 6.9729 -0.2277 -2.4490 44 1 8.4990 -2.1878 -0.6733 45 1 9.0433 -0.5717 -1.1853 46 1 8.9776 -1.3154 -3.5592 47 1 10.0818 -2.3203 -2.5902 48 1 9.3164 -3.3365 -4.9705 49 1 10.2465 -5.4275 -7.3973 50 1 6.1912 -3.8020 -3.5822 51 1 6.7309 -2.2528 -4.2760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000364133.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:48 Heat of formation + Delta-G solvation = 3.519306 kcal Electronic energy + Delta-G solvation = -29259.818176 eV Core-core repulsion = 25387.068807 eV Total energy + Delta-G solvation = -3872.749369 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.11644 -41.26144 -38.82018 -36.26059 -36.23488 -35.82931 -33.95992 -32.76077 -31.71371 -29.93319 -29.61292 -28.02131 -26.90572 -25.89777 -24.96952 -23.68023 -23.26479 -22.14606 -21.63918 -20.03673 -19.97506 -19.13478 -18.62534 -17.58592 -17.08838 -16.92699 -16.67661 -16.07536 -15.97986 -15.55997 -15.46338 -15.29709 -15.19369 -14.78890 -14.72521 -14.41716 -14.15183 -14.10217 -13.88259 -13.73894 -13.64877 -13.40430 -13.05595 -12.94046 -12.89124 -12.53044 -12.47731 -12.35426 -12.27166 -12.09871 -12.01785 -11.91092 -11.84166 -11.69343 -11.35884 -11.12950 -10.96757 -10.86117 -10.56535 -9.77016 -9.27851 -9.03131 -8.00075 -5.29258 1.09678 1.43443 1.45806 1.51936 1.53771 1.63334 2.11783 2.21703 2.52376 3.33011 3.37684 3.49060 3.60790 3.66385 3.75929 3.85059 4.00779 4.04901 4.14861 4.17830 4.22457 4.29853 4.32496 4.36429 4.38489 4.40295 4.60562 4.62997 4.73333 4.76237 4.78506 4.83926 4.87173 4.90153 4.92950 4.98009 5.03081 5.09496 5.13766 5.31338 5.36765 5.37581 5.42064 5.44539 5.47158 5.55423 5.88738 6.22537 6.23560 6.42170 7.10011 7.19257 7.29219 8.02029 8.26349 9.22358 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017712 B = 0.002372 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.445821 B =11802.758262 C =12195.134494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.014 4.014 3 C -0.134 4.134 4 C 0.205 3.795 5 N -0.518 5.518 6 C -0.051 4.051 7 C -0.056 4.056 8 N -0.454 5.454 9 C 0.122 3.878 10 C -0.137 4.137 11 C 0.511 3.489 12 O -0.590 6.590 13 N -0.603 5.603 14 C 0.101 3.899 15 C -0.122 4.122 16 C -0.120 4.120 17 C 0.167 3.833 18 H 0.032 0.968 19 N -0.731 5.731 20 C -0.245 4.245 21 H 0.066 0.934 22 C -0.068 4.068 23 N -0.964 5.964 24 Si 0.967 3.033 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.108 3.892 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.183 0.817 37 H 0.197 0.803 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.109 0.891 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.377 0.623 49 H 0.253 0.747 50 H 0.050 0.950 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 15.207 18.273 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.035 4.035 3 C -0.192 4.192 4 C -0.058 4.058 5 N -0.237 5.237 6 C -0.198 4.198 7 C -0.189 4.189 8 N -0.136 5.136 9 C -0.001 4.001 10 C -0.177 4.177 11 C 0.300 3.700 12 O -0.471 6.471 13 N -0.335 5.335 14 C -0.020 4.020 15 C -0.160 4.160 16 C -0.158 4.158 17 C 0.058 3.942 18 H 0.050 0.950 19 N -0.370 5.370 20 C -0.377 4.377 21 H 0.084 0.916 22 C -0.261 4.261 23 N -0.614 5.614 24 Si 0.796 3.204 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.018 4.018 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.200 0.800 37 H 0.214 0.786 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.134 0.866 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.127 0.873 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.209 0.791 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.428 15.111 18.199 27.201 hybrid contribution 0.786 -2.056 -1.039 2.434 sum -12.643 13.055 17.160 24.995 Atomic orbital electron populations 1.21746 0.92926 1.01737 1.03013 1.19716 0.96939 0.96356 0.90454 1.21737 1.01084 0.93433 1.02931 1.23592 0.97037 0.89266 0.95889 1.70162 1.24820 1.28769 0.99915 1.22661 1.01810 0.94820 1.00469 1.23171 1.08213 1.04948 0.82533 1.45541 1.38328 1.22727 1.07015 1.21531 0.95884 0.96370 0.86280 1.21924 0.98278 1.01586 0.95962 1.20951 0.80225 0.83894 0.84915 1.90726 1.59039 1.30180 1.67136 1.48303 1.24106 1.31346 1.29757 1.22110 0.91897 0.86657 1.01330 1.21873 0.95610 1.02176 0.96367 1.21750 0.99197 0.96062 0.98786 1.20654 0.90968 0.94211 0.88397 0.95004 1.42522 1.63482 1.06778 1.24267 1.19472 1.27389 0.86766 1.04095 0.91617 1.25486 1.01052 1.02000 0.97543 1.69784 1.41535 1.36271 1.13782 0.85312 0.77517 0.80570 0.76991 1.20890 1.21670 1.20394 1.22199 0.96611 0.96002 0.87000 0.92491 0.90050 0.93596 0.89274 0.90193 0.92603 0.92446 0.79978 0.78600 0.88591 0.88242 0.86062 0.86102 0.86620 0.89633 0.91682 0.87318 0.91567 0.92267 0.79058 0.93827 0.93177 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.18 71.98 0.66 -1.33 16 2 C -0.01 -0.22 3.25 -11.54 -0.04 -0.25 16 3 C -0.13 -1.71 9.18 71.98 0.66 -1.04 16 4 C 0.20 3.97 6.41 138.13 0.89 4.86 16 5 N -0.52 -11.80 11.25 -188.13 -2.12 -13.92 16 6 C -0.05 -0.96 11.87 83.53 0.99 0.03 16 7 C -0.06 -0.92 11.58 83.09 0.96 0.04 16 8 N -0.45 -7.91 2.75 -514.29 -1.41 -9.33 16 9 C 0.12 2.04 4.98 86.38 0.43 2.47 16 10 C -0.14 -2.06 4.37 29.85 0.13 -1.93 16 11 C 0.51 13.08 7.70 87.66 0.67 13.75 16 12 O -0.59 -20.90 15.40 -3.04 -0.05 -20.94 16 13 N -0.60 -15.48 2.97 -818.88 -2.43 -17.91 16 14 C 0.10 1.62 6.34 86.36 0.55 2.17 16 15 C -0.12 -2.19 6.08 30.67 0.19 -2.00 16 16 C -0.12 -3.36 5.36 30.62 0.16 -3.20 16 17 C 0.17 6.40 2.92 45.07 0.13 6.53 16 18 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 19 N -0.73 -36.29 5.12 -322.57 -1.65 -37.94 16 20 C -0.25 -13.77 9.93 84.04 0.83 -12.94 16 21 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 22 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 23 N -0.96 -58.35 13.06 21.65 0.28 -58.06 16 24 Si 0.97 46.71 29.55 68.60 2.03 48.73 16 25 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 28 C 0.11 3.88 6.02 86.36 0.52 4.40 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.09 1.20 6.85 -2.39 -0.02 1.18 16 33 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.20 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.10 1.72 7.24 -2.39 -0.02 1.70 16 39 H 0.10 1.77 8.09 -2.39 -0.02 1.75 16 40 H 0.12 1.39 7.69 -2.39 -0.02 1.38 16 41 H 0.12 1.34 7.94 -2.39 -0.02 1.32 16 42 H 0.12 1.06 5.93 -2.39 -0.01 1.04 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.38 19.77 7.80 -92.70 -0.72 19.05 16 49 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 50 H 0.05 2.21 7.00 -2.39 -0.02 2.20 16 51 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -75.14 408.67 3.04 -72.10 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.18 Total: 29.15 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 8.21 Total: 8.12 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -7.33 Total: -137.16 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.05 Total: -20.94 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -75.14 3.04 -72.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000364133.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.617 kcal (2) G-P(sol) polarization free energy of solvation -75.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds