Wall clock time and date at job start Tue Mar 31 2020 19:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46757 * 2 1 4 4 C 1.50700 * 109.46981 * 179.97438 * 3 2 1 5 5 C 1.38039 * 126.29857 * 270.00540 * 4 3 2 6 6 C 1.47432 * 126.40975 * 0.02562 * 5 4 3 7 7 O 1.21605 * 120.00364 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99812 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00084 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47137 * 179.97438 * 9 8 6 11 11 C 1.53037 * 109.46281 * 295.03314 * 10 9 8 12 12 C 1.53193 * 109.31582 * 178.60298 * 11 10 9 13 13 N 1.46929 * 108.76266 * 54.64739 * 12 11 10 14 14 C 1.36941 * 120.62324 * 126.36870 * 13 12 11 15 15 H 1.08006 * 119.99204 * 208.01979 * 14 13 12 16 16 C 1.38805 * 120.00498 * 28.02371 * 14 13 12 17 17 N 1.31619 * 120.00093 * 17.51524 * 16 14 13 18 18 Si 1.86803 * 120.00217 * 197.52601 * 16 14 13 19 19 H 1.48500 * 109.47209 * 94.06063 * 18 16 14 20 20 H 1.48491 * 109.47179 * 214.06359 * 18 16 14 21 21 H 1.48499 * 109.46576 * 334.06232 * 18 16 14 22 22 C 1.46926 * 118.74200 * 306.38464 * 13 12 11 23 23 C 1.53035 * 109.45889 * 174.97085 * 10 9 8 24 24 C 1.41287 * 107.17305 * 180.02562 * 5 4 3 25 25 N 1.30446 * 108.02374 * 359.97438 * 24 5 4 26 26 N 1.34259 * 126.28427 * 89.69347 * 4 3 2 27 27 C 1.46498 * 125.75818 * 359.97438 * 26 4 3 28 28 H 1.09003 * 109.46985 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47246 * 299.99538 * 1 2 3 30 30 H 1.08995 * 109.47729 * 59.99972 * 1 2 3 31 31 H 1.08996 * 109.47087 * 240.00395 * 2 1 3 32 32 H 1.08998 * 109.47344 * 119.99679 * 2 1 3 33 33 H 1.08995 * 109.47023 * 300.00460 * 3 2 1 34 34 H 1.09006 * 109.46865 * 60.00228 * 3 2 1 35 35 H 0.96998 * 119.99585 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.46850 * 300.00510 * 9 8 6 37 37 H 1.08998 * 109.46692 * 59.99899 * 9 8 6 38 38 H 1.09001 * 109.45553 * 55.00127 * 10 9 8 39 39 H 1.09006 * 109.49151 * 298.56208 * 11 10 9 40 40 H 1.08994 * 109.50095 * 58.65805 * 11 10 9 41 41 H 1.09001 * 109.59273 * 294.86722 * 12 11 10 42 42 H 1.08991 * 109.70523 * 174.50431 * 12 11 10 43 43 H 0.96995 * 119.99975 * 180.02562 * 17 16 14 44 44 H 1.08999 * 109.58962 * 293.82489 * 22 13 12 45 45 H 1.09003 * 109.70106 * 173.46341 * 22 13 12 46 46 H 1.09000 * 109.50273 * 301.34393 * 23 10 9 47 47 H 1.09008 * 109.49415 * 61.44088 * 23 10 9 48 48 H 1.08001 * 125.98539 * 179.97438 * 24 5 4 49 49 H 1.09003 * 109.47425 * 89.99887 * 27 26 4 50 50 H 1.08997 * 109.47528 * 210.00026 * 27 26 4 51 51 H 1.09000 * 109.47225 * 329.99870 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3636 1.4427 1.1135 6 6 3.9248 1.4423 2.5210 7 8 2.7385 1.4413 2.7881 8 7 4.8386 1.4429 3.5118 9 6 4.4026 1.4430 4.9104 10 6 5.6280 1.4432 5.8265 11 6 6.4021 0.1359 5.6430 12 6 7.6468 0.1544 6.5358 13 7 7.2317 0.4206 7.9199 14 6 7.6070 -0.4192 8.9344 15 1 6.9864 -0.5153 9.8131 16 6 8.7848 -1.1466 8.8336 17 7 9.7034 -0.7938 7.9594 18 14 9.0662 -2.6265 9.9382 19 1 8.6367 -3.8602 9.2320 20 1 10.5090 -2.7257 10.2749 21 1 8.2764 -2.4699 11.1860 22 6 6.4062 1.6045 8.1946 23 6 5.1755 1.5698 7.2830 24 6 5.6987 1.4434 0.6511 25 7 5.6742 1.4431 -0.6531 26 7 4.3419 1.4367 -1.0813 27 6 3.8908 1.4285 -2.4750 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 -0.8899 34 1 1.6765 1.9564 0.8901 35 1 5.7849 1.4441 3.2987 36 1 3.8035 2.3327 5.1041 37 1 3.8044 0.5528 5.1045 38 1 6.2717 2.2852 5.5717 39 1 5.7669 -0.7051 5.9215 40 1 6.7037 0.0349 4.6005 41 1 8.3254 0.9388 6.2006 42 1 8.1503 -0.8109 6.4844 43 1 10.5263 -1.3024 7.8887 44 1 6.9837 2.5071 7.9947 45 1 6.0888 1.5973 9.2374 46 1 4.6042 2.4896 7.4079 47 1 4.5521 0.7151 7.5459 48 1 6.5843 1.4440 1.2693 49 1 3.7785 2.4541 -2.8267 50 1 4.6258 0.9114 -3.0918 51 1 2.9324 0.9139 -2.5437 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001585750.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:31 Heat of formation + Delta-G solvation = 36.054726 kcal Electronic energy + Delta-G solvation = -29040.988837 eV Core-core repulsion = 25169.650309 eV Total energy + Delta-G solvation = -3871.338527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.71377 -39.22160 -37.68096 -35.62741 -34.74924 -33.60125 -32.75339 -30.96635 -30.53604 -29.81584 -27.95378 -26.79834 -26.32993 -24.02851 -22.68012 -22.13770 -21.99284 -21.11893 -20.42494 -19.75582 -19.02517 -17.68565 -16.72638 -16.09223 -16.00232 -15.63181 -15.17522 -14.92226 -14.82617 -14.74830 -13.97304 -13.91415 -13.74546 -13.49305 -13.42503 -13.36970 -13.08486 -12.99378 -12.83130 -12.53168 -12.31887 -12.26607 -11.78959 -11.75811 -11.57272 -11.35685 -11.19562 -10.96680 -10.83008 -10.71493 -10.47505 -10.19493 -10.17792 -9.90281 -9.77034 -9.65347 -9.50695 -9.39658 -8.99531 -8.65354 -8.44417 -6.64555 -5.76914 -3.18737 1.32420 2.02944 2.06853 3.39344 3.41597 3.46608 3.47758 3.49463 4.15602 4.19790 4.51866 4.55742 4.68450 4.73520 4.77507 4.94765 4.97541 5.03280 5.15526 5.22192 5.29108 5.32598 5.40587 5.43408 5.46569 5.53195 5.60461 5.65402 5.81160 5.93761 5.97875 5.99821 6.01863 6.12013 6.19891 6.22707 6.33636 6.49685 6.57455 6.60476 6.65195 6.72358 6.80722 6.86315 7.02219 7.31801 7.39374 7.67426 7.70488 7.82209 8.40313 8.47733 9.24034 9.87731 10.44448 11.31585 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.002296 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.214219 B =12191.967067 C =12678.764359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.065 4.065 4 C 0.158 3.842 5 C -0.293 4.293 6 C 0.593 3.407 7 O -0.553 6.553 8 N -0.721 5.721 9 C 0.128 3.872 10 C -0.091 4.091 11 C -0.134 4.134 12 C 0.171 3.829 13 N -0.593 5.593 14 C -0.250 4.250 15 H 0.065 0.935 16 C 0.001 3.999 17 N -0.903 5.903 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.146 3.854 23 C -0.124 4.124 24 C 0.084 3.916 25 N -0.298 5.298 26 N -0.364 5.364 27 C 0.096 3.904 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.399 0.601 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.017 0.983 42 H 0.086 0.914 43 H 0.253 0.747 44 H 0.017 0.983 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.191 0.809 49 H 0.078 0.922 50 H 0.093 0.907 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.690 5.541 -20.805 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.104 4.104 4 C 0.026 3.974 5 C -0.308 4.308 6 C 0.380 3.620 7 O -0.432 6.432 8 N -0.371 5.371 9 C 0.004 3.996 10 C -0.110 4.110 11 C -0.174 4.174 12 C 0.045 3.955 13 N -0.315 5.315 14 C -0.380 4.380 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.020 3.980 23 C -0.164 4.164 24 C -0.103 4.103 25 N -0.117 5.117 26 N -0.144 5.144 27 C -0.045 4.045 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.234 0.766 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.208 0.792 49 H 0.097 0.903 50 H 0.112 0.888 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.677 5.467 -21.832 26.868 hybrid contribution 0.458 -0.764 1.030 1.362 sum -14.218 4.704 -20.801 25.632 Atomic orbital electron populations 1.21737 0.94952 1.01943 1.02042 1.21396 0.96319 0.94896 1.02446 1.20558 0.85739 0.99227 1.04841 1.21517 0.94572 0.95053 0.86264 1.20053 0.92805 1.24218 0.93734 1.17168 0.85492 0.75707 0.83588 1.90712 1.16497 1.51657 1.84349 1.45832 1.09669 1.75250 1.06353 1.21516 0.97310 1.01697 0.79041 1.21308 0.95178 0.99482 0.95021 1.22245 1.00090 0.95910 0.99127 1.20765 0.90932 1.01452 0.82378 1.44059 1.59435 1.24653 1.03398 1.19211 1.01899 1.17704 0.99198 0.91708 1.25030 0.94922 1.00801 0.98978 1.70037 1.06912 1.39343 1.38484 0.86289 0.76998 0.83295 0.80296 1.21513 1.21827 1.20403 1.20882 0.90514 0.90114 0.96536 1.21980 0.99492 1.00550 0.94380 1.24086 0.97369 0.96887 0.91993 1.77205 0.95877 1.25316 1.13329 1.48349 1.04129 1.55588 1.06297 1.21954 1.01326 1.03766 0.77487 0.92480 0.91986 0.92924 0.92664 0.90815 0.90900 0.86902 0.76605 0.92006 0.91682 0.91329 0.92527 0.93560 0.96539 0.89587 0.93705 0.96550 0.92792 0.92962 0.92085 0.79219 0.90340 0.88799 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.11 -0.95 5.92 -26.73 -0.16 -1.11 16 3 C -0.06 -0.58 4.67 -27.88 -0.13 -0.71 16 4 C 0.16 1.73 6.26 -81.60 -0.51 1.21 16 5 C -0.29 -3.65 6.13 -105.07 -0.64 -4.29 16 6 C 0.59 8.33 7.81 -12.51 -0.10 8.24 16 7 O -0.55 -9.02 14.84 5.27 0.08 -8.95 16 8 N -0.72 -9.40 5.26 -61.38 -0.32 -9.72 16 9 C 0.13 1.81 5.06 -4.04 -0.02 1.79 16 10 C -0.09 -1.42 2.19 -90.58 -0.20 -1.62 16 11 C -0.13 -2.42 5.25 -26.61 -0.14 -2.56 16 12 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 13 N -0.59 -14.65 2.99 -172.32 -0.52 -15.17 16 14 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 15 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 16 C 0.00 0.03 4.90 -17.43 -0.09 -0.05 16 17 N -0.90 -26.11 11.22 55.49 0.62 -25.49 16 18 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 C 0.15 3.00 6.51 -3.71 -0.02 2.98 16 23 C -0.12 -2.08 5.36 -26.61 -0.14 -2.22 16 24 C 0.08 0.96 11.50 -16.98 -0.20 0.76 16 25 N -0.30 -3.58 12.50 30.86 0.39 -3.19 16 26 N -0.36 -3.65 3.98 -63.34 -0.25 -3.90 16 27 C 0.10 0.52 11.06 59.85 0.66 1.18 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.46 7.71 -51.93 -0.40 0.06 16 34 H 0.11 1.23 6.50 -51.93 -0.34 0.89 16 35 H 0.40 4.54 6.61 -40.82 -0.27 4.27 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.73 7.15 -51.93 -0.37 0.36 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.05 1.09 7.94 -51.93 -0.41 0.68 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 48 H 0.19 1.65 7.50 -52.49 -0.39 1.25 16 49 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.09 0.31 7.63 -51.93 -0.40 -0.09 16 LS Contribution 404.56 15.07 6.10 6.10 Total: -1.00 -33.18 404.56 -9.20 -42.39 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -8.79 Total: 1.39 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -1.48 Total: -0.16 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.08 Total: -57.48 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.18 -9.20 -42.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001585750.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.442 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds