Wall clock time and date at job start Tue Mar 31 2020 19:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46757 * 2 1 4 4 C 1.50700 * 109.46981 * 179.97438 * 3 2 1 5 5 C 1.38039 * 126.29857 * 270.00540 * 4 3 2 6 6 C 1.47432 * 126.40975 * 0.02562 * 5 4 3 7 7 O 1.21605 * 120.00364 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99812 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00084 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47137 * 179.97438 * 9 8 6 11 11 C 1.53037 * 109.46281 * 295.03314 * 10 9 8 12 12 C 1.53193 * 109.31582 * 178.60298 * 11 10 9 13 13 N 1.46929 * 108.76266 * 54.64739 * 12 11 10 14 14 C 1.36941 * 120.62324 * 126.36870 * 13 12 11 15 15 H 1.08006 * 119.99204 * 208.01979 * 14 13 12 16 16 C 1.38805 * 120.00498 * 28.02371 * 14 13 12 17 17 N 1.31619 * 120.00093 * 17.51524 * 16 14 13 18 18 Si 1.86803 * 120.00217 * 197.52601 * 16 14 13 19 19 H 1.48500 * 109.47209 * 94.06063 * 18 16 14 20 20 H 1.48491 * 109.47179 * 214.06359 * 18 16 14 21 21 H 1.48499 * 109.46576 * 334.06232 * 18 16 14 22 22 C 1.46926 * 118.74200 * 306.38464 * 13 12 11 23 23 C 1.53035 * 109.45889 * 174.97085 * 10 9 8 24 24 C 1.41287 * 107.17305 * 180.02562 * 5 4 3 25 25 N 1.30446 * 108.02374 * 359.97438 * 24 5 4 26 26 N 1.34259 * 126.28427 * 89.69347 * 4 3 2 27 27 C 1.46498 * 125.75818 * 359.97438 * 26 4 3 28 28 H 1.09003 * 109.46985 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47246 * 299.99538 * 1 2 3 30 30 H 1.08995 * 109.47729 * 59.99972 * 1 2 3 31 31 H 1.08996 * 109.47087 * 240.00395 * 2 1 3 32 32 H 1.08998 * 109.47344 * 119.99679 * 2 1 3 33 33 H 1.08995 * 109.47023 * 300.00460 * 3 2 1 34 34 H 1.09006 * 109.46865 * 60.00228 * 3 2 1 35 35 H 0.96998 * 119.99585 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.46850 * 300.00510 * 9 8 6 37 37 H 1.08998 * 109.46692 * 59.99899 * 9 8 6 38 38 H 1.09001 * 109.45553 * 55.00127 * 10 9 8 39 39 H 1.09006 * 109.49151 * 298.56208 * 11 10 9 40 40 H 1.08994 * 109.50095 * 58.65805 * 11 10 9 41 41 H 1.09001 * 109.59273 * 294.86722 * 12 11 10 42 42 H 1.08991 * 109.70523 * 174.50431 * 12 11 10 43 43 H 0.96995 * 119.99975 * 180.02562 * 17 16 14 44 44 H 1.08999 * 109.58962 * 293.82489 * 22 13 12 45 45 H 1.09003 * 109.70106 * 173.46341 * 22 13 12 46 46 H 1.09000 * 109.50273 * 301.34393 * 23 10 9 47 47 H 1.09008 * 109.49415 * 61.44088 * 23 10 9 48 48 H 1.08001 * 125.98539 * 179.97438 * 24 5 4 49 49 H 1.09003 * 109.47425 * 89.99887 * 27 26 4 50 50 H 1.08997 * 109.47528 * 210.00026 * 27 26 4 51 51 H 1.09000 * 109.47225 * 329.99870 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3636 1.4427 1.1135 6 6 3.9248 1.4423 2.5210 7 8 2.7385 1.4413 2.7881 8 7 4.8386 1.4429 3.5118 9 6 4.4026 1.4430 4.9104 10 6 5.6280 1.4432 5.8265 11 6 6.4021 0.1359 5.6430 12 6 7.6468 0.1544 6.5358 13 7 7.2317 0.4206 7.9199 14 6 7.6070 -0.4192 8.9344 15 1 6.9864 -0.5153 9.8131 16 6 8.7848 -1.1466 8.8336 17 7 9.7034 -0.7938 7.9594 18 14 9.0662 -2.6265 9.9382 19 1 8.6367 -3.8602 9.2320 20 1 10.5090 -2.7257 10.2749 21 1 8.2764 -2.4699 11.1860 22 6 6.4062 1.6045 8.1946 23 6 5.1755 1.5698 7.2830 24 6 5.6987 1.4434 0.6511 25 7 5.6742 1.4431 -0.6531 26 7 4.3419 1.4367 -1.0813 27 6 3.8908 1.4285 -2.4750 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 -0.8899 34 1 1.6765 1.9564 0.8901 35 1 5.7849 1.4441 3.2987 36 1 3.8035 2.3327 5.1041 37 1 3.8044 0.5528 5.1045 38 1 6.2717 2.2852 5.5717 39 1 5.7669 -0.7051 5.9215 40 1 6.7037 0.0349 4.6005 41 1 8.3254 0.9388 6.2006 42 1 8.1503 -0.8109 6.4844 43 1 10.5263 -1.3024 7.8887 44 1 6.9837 2.5071 7.9947 45 1 6.0888 1.5973 9.2374 46 1 4.6042 2.4896 7.4079 47 1 4.5521 0.7151 7.5459 48 1 6.5843 1.4440 1.2693 49 1 3.7785 2.4541 -2.8267 50 1 4.6258 0.9114 -3.0918 51 1 2.9324 0.9139 -2.5437 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001585750.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:29 Heat of formation + Delta-G solvation = 15.731829 kcal Electronic energy + Delta-G solvation = -29041.870104 eV Core-core repulsion = 25169.650309 eV Total energy + Delta-G solvation = -3872.219794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.52767 -40.37122 -39.17612 -36.50993 -36.03420 -34.54263 -34.12494 -32.39320 -31.60752 -31.47491 -29.01014 -27.64565 -27.41775 -25.66766 -23.92109 -23.52270 -22.68696 -22.54137 -21.37739 -20.85554 -20.38804 -18.77889 -18.47075 -16.96775 -16.81182 -16.77323 -16.64704 -16.06655 -15.83705 -15.65747 -15.50643 -15.27342 -14.97564 -14.78518 -14.60422 -14.43361 -14.10479 -13.91862 -13.74334 -13.57141 -13.50320 -13.28573 -13.12129 -13.04404 -12.80331 -12.56302 -12.43767 -12.25645 -12.18827 -11.95435 -11.93519 -11.80788 -11.56731 -11.54006 -11.19311 -11.09353 -10.79112 -10.51625 -10.40118 -10.06607 -9.56490 -8.64911 -7.85775 -5.30116 0.48887 1.14103 1.40561 1.46491 1.48235 1.56960 2.38101 2.48824 2.52369 3.28199 3.46437 3.51573 3.74297 3.88087 3.90222 4.00008 4.05710 4.10270 4.11797 4.18900 4.38185 4.40631 4.51951 4.57283 4.58765 4.59915 4.64427 4.73841 4.77987 4.78609 4.84224 4.92389 4.96497 4.98224 5.07816 5.18707 5.22443 5.29364 5.32732 5.33882 5.38841 5.41621 5.45507 5.52333 5.60703 5.69403 5.82572 5.88625 6.41856 6.49000 6.68959 7.17887 7.35304 7.90392 8.40913 9.20214 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.002296 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.214219 B =12191.967067 C =12678.764359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.060 4.060 4 C 0.160 3.840 5 C -0.321 4.321 6 C 0.592 3.408 7 O -0.580 6.580 8 N -0.716 5.716 9 C 0.141 3.859 10 C -0.079 4.079 11 C -0.120 4.120 12 C 0.176 3.824 13 N -0.612 5.612 14 C -0.260 4.260 15 H 0.064 0.936 16 C -0.051 4.051 17 N -0.934 5.934 18 Si 0.963 3.037 19 H -0.287 1.287 20 H -0.295 1.295 21 H -0.269 1.269 22 C 0.141 3.859 23 C -0.115 4.115 24 C 0.083 3.917 25 N -0.322 5.322 26 N -0.360 5.360 27 C 0.083 3.917 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.408 0.592 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.000 1.000 42 H 0.049 0.951 43 H 0.249 0.751 44 H 0.016 0.984 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.209 0.791 49 H 0.096 0.904 50 H 0.100 0.900 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.331 6.039 -22.544 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.099 4.099 4 C 0.026 3.974 5 C -0.335 4.335 6 C 0.381 3.619 7 O -0.462 6.462 8 N -0.367 5.367 9 C 0.017 3.983 10 C -0.098 4.098 11 C -0.159 4.159 12 C 0.051 3.949 13 N -0.336 5.336 14 C -0.391 4.391 15 H 0.082 0.918 16 C -0.247 4.247 17 N -0.580 5.580 18 Si 0.792 3.208 19 H -0.214 1.214 20 H -0.221 1.221 21 H -0.193 1.193 22 C 0.015 3.985 23 C -0.154 4.154 24 C -0.105 4.105 25 N -0.142 5.142 26 N -0.138 5.138 27 C -0.057 4.057 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.244 0.756 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.018 0.982 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.073 0.927 48 H 0.225 0.775 49 H 0.114 0.886 50 H 0.119 0.881 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.323 5.983 -23.591 29.305 hybrid contribution 0.949 -0.870 1.520 1.992 sum -15.374 5.112 -22.072 27.379 Atomic orbital electron populations 1.21717 0.93811 1.02346 1.02488 1.21342 0.97252 0.94406 1.01597 1.20571 0.84452 0.99525 1.05353 1.21816 0.95436 0.93900 0.86269 1.20067 0.93760 1.26437 0.93282 1.17401 0.85116 0.75030 0.84323 1.90695 1.17595 1.53062 1.84847 1.45747 1.10126 1.75055 1.05787 1.21263 0.96160 1.01577 0.79288 1.21161 0.95566 0.98137 0.94909 1.22029 0.97698 0.96997 0.99163 1.20592 0.92662 0.98758 0.82923 1.44352 1.59932 1.25867 1.03473 1.19516 1.01728 1.18128 0.99710 0.91833 1.25752 0.94900 1.03311 1.00708 1.70179 1.07219 1.40381 1.40216 0.85308 0.76537 0.80006 0.78963 1.21440 1.22145 1.19334 1.21052 0.91349 0.88485 0.97591 1.21852 0.97669 1.01966 0.93907 1.24388 0.97680 0.96290 0.92095 1.77152 0.97305 1.26131 1.13588 1.48695 1.03332 1.54212 1.07605 1.22387 1.02628 1.05435 0.75215 0.92135 0.93250 0.90743 0.91151 0.93980 0.87685 0.89006 0.75589 0.91226 0.92748 0.90518 0.93736 0.91214 0.98199 0.93264 0.94175 0.96572 0.92965 0.89725 0.92696 0.77480 0.88602 0.88118 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.10 16 2 C -0.11 -1.67 5.92 30.60 0.18 -1.49 16 3 C -0.06 -0.97 4.67 29.85 0.14 -0.83 16 4 C 0.16 3.26 6.26 42.14 0.26 3.52 16 5 C -0.32 -7.71 6.13 -20.15 -0.12 -7.84 16 6 C 0.59 16.29 7.81 86.66 0.68 16.97 16 7 O -0.58 -18.86 14.84 -4.05 -0.06 -18.92 16 8 N -0.72 -17.81 5.26 -466.37 -2.45 -20.26 16 9 C 0.14 3.77 5.06 86.38 0.44 4.21 16 10 C -0.08 -2.34 2.19 -10.77 -0.02 -2.37 16 11 C -0.12 -4.26 5.25 30.67 0.16 -4.10 16 12 C 0.18 8.33 5.31 86.36 0.46 8.79 16 13 N -0.61 -30.67 2.99 -699.09 -2.09 -32.76 16 14 C -0.26 -14.46 9.58 84.03 0.81 -13.65 16 15 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 16 C -0.05 -2.90 4.90 84.86 0.42 -2.48 16 17 N -0.93 -55.46 11.22 21.65 0.24 -55.22 16 18 Si 0.96 45.39 29.59 68.60 2.03 47.42 16 19 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 20 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 C 0.14 5.71 6.51 86.36 0.56 6.27 16 23 C -0.11 -3.64 5.36 30.67 0.16 -3.47 16 24 C 0.08 1.80 11.50 85.65 0.99 2.78 16 25 N -0.32 -7.31 12.50 -56.28 -0.70 -8.01 16 26 N -0.36 -6.50 3.98 -354.32 -1.41 -7.91 16 27 C 0.08 0.65 11.06 127.77 1.41 2.07 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 0.98 7.71 -2.39 -0.02 0.96 16 34 H 0.09 1.94 6.50 -2.38 -0.02 1.92 16 35 H 0.41 8.66 6.61 -92.71 -0.61 8.05 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.07 2.13 7.15 -2.39 -0.02 2.12 16 41 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.05 2.68 6.06 -2.39 -0.01 2.66 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.05 2.10 7.94 -2.39 -0.02 2.08 16 46 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 48 H 0.21 3.37 7.50 -2.91 -0.02 3.35 16 49 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.11 0.35 7.63 -2.39 -0.02 0.33 16 Total: -1.00 -73.58 404.56 3.08 -70.50 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.30 Total: 17.90 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 7.23 Total: 7.26 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -6.42 Total: -124.16 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.06 Total: -18.92 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.58 3.08 -70.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001585750.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.232 kcal (2) G-P(sol) polarization free energy of solvation -73.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds