Wall clock time and date at job start Tue Mar 31 2020 20:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34782 * 119.99857 * 2 1 4 4 O 1.21629 * 119.99704 * 180.86836 * 3 2 1 5 5 C 1.47158 * 119.99930 * 0.86757 * 3 2 1 6 6 C 1.38410 * 126.88074 * 169.74531 * 5 3 2 7 7 C 1.39677 * 105.35569 * 180.13999 * 6 5 3 8 8 C 1.50705 * 126.06423 * 179.85250 * 7 6 5 9 9 C 1.52998 * 109.47195 * 74.71580 * 8 7 6 10 10 C 1.52997 * 109.47204 * 314.71169 * 8 7 6 11 11 C 1.53001 * 109.46553 * 194.71530 * 8 7 6 12 12 N 1.30862 * 107.86418 * 359.58855 * 7 6 5 13 13 N 1.28442 * 110.92613 * 0.26083 * 12 7 6 14 14 H 0.97001 * 125.19273 * 180.02562 * 13 12 7 15 15 C 1.46501 * 119.99758 * 179.97438 * 2 1 3 16 16 C 1.53033 * 109.45756 * 60.03382 * 15 2 1 17 17 C 1.53196 * 109.31111 * 178.59810 * 16 15 2 18 18 N 1.46924 * 108.76408 * 54.65380 * 17 16 15 19 19 C 1.36934 * 120.63138 * 126.40876 * 18 17 16 20 20 H 1.08003 * 119.99854 * 324.41369 * 19 18 17 21 21 C 1.38810 * 120.00210 * 144.41825 * 19 18 17 22 22 N 1.31618 * 119.99942 * 3.64905 * 21 19 18 23 23 Si 1.86797 * 120.00036 * 183.65203 * 21 19 18 24 24 H 1.48501 * 109.47185 * 89.99800 * 23 21 19 25 25 H 1.48501 * 109.47236 * 209.99777 * 23 21 19 26 26 H 1.48504 * 109.47380 * 329.99747 * 23 21 19 27 27 C 1.46926 * 118.74089 * 306.38480 * 18 17 16 28 28 C 1.53036 * 109.46303 * 299.97446 * 15 2 1 29 29 H 1.08999 * 109.46824 * 83.30409 * 1 2 3 30 30 H 1.08996 * 109.47158 * 203.30124 * 1 2 3 31 31 H 1.09007 * 109.47267 * 323.30653 * 1 2 3 32 32 H 1.08004 * 127.32199 * 359.97438 * 6 5 3 33 33 H 1.09003 * 109.46846 * 299.99601 * 9 8 7 34 34 H 1.08996 * 109.47024 * 59.99597 * 9 8 7 35 35 H 1.08998 * 109.46879 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.47360 * 180.02562 * 10 8 7 37 37 H 1.08997 * 109.47186 * 300.00604 * 10 8 7 38 38 H 1.09003 * 109.47210 * 60.00171 * 10 8 7 39 39 H 1.08997 * 109.47436 * 299.99364 * 11 8 7 40 40 H 1.08998 * 109.47566 * 60.00166 * 11 8 7 41 41 H 1.09011 * 109.46753 * 180.02562 * 11 8 7 42 42 H 1.09010 * 109.45361 * 180.02562 * 15 2 1 43 43 H 1.08998 * 109.49763 * 298.56054 * 16 15 2 44 44 H 1.08999 * 109.50211 * 58.66201 * 16 15 2 45 45 H 1.08998 * 109.59804 * 294.86738 * 17 16 15 46 46 H 1.09004 * 109.70195 * 174.50488 * 17 16 15 47 47 H 0.97003 * 119.99654 * 180.02562 * 22 21 19 48 48 H 1.09010 * 109.58640 * 293.82528 * 27 18 17 49 49 H 1.08992 * 109.70682 * 173.47004 * 27 18 17 50 50 H 1.09003 * 109.49780 * 301.33968 * 28 15 2 51 51 H 1.09001 * 109.49631 * 61.43159 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3551 1.1673 -0.0160 5 6 1.4032 2.4416 0.0193 6 6 1.9339 3.7042 0.2190 7 6 0.8459 4.5776 0.1519 8 6 0.8994 6.0753 0.3107 9 6 1.4894 6.7016 -0.9544 10 6 1.7775 6.4297 1.5125 11 6 -0.5145 6.6150 0.5354 12 7 -0.2272 3.8651 -0.0790 13 7 0.0606 2.6161 -0.1623 14 1 -0.5779 1.9052 -0.3289 15 6 2.1975 -1.2688 0.0006 16 6 1.8282 -2.0711 -1.2491 17 6 2.6220 -3.3813 -1.2629 18 7 2.3849 -4.0909 0.0015 19 6 1.9519 -5.3900 0.0019 20 1 1.2651 -5.7305 -0.7589 21 6 2.3957 -6.2693 0.9801 22 7 3.1754 -5.8373 1.9485 23 14 1.8864 -8.0655 0.9220 24 1 2.8787 -8.8361 0.1303 25 1 1.8262 -8.6079 2.3031 26 1 0.5492 -8.1807 0.2863 27 6 2.6216 -3.3805 1.2656 28 6 1.8281 -2.0702 1.2508 29 1 -0.3633 0.1198 -1.0207 30 1 -0.3633 -0.9438 0.4065 31 1 -0.3634 0.8241 0.6141 32 1 2.9688 3.9595 0.3928 33 1 2.4967 6.3170 -1.1144 34 1 0.8638 6.4490 -1.8105 35 1 1.5276 7.7848 -0.8397 36 1 1.8158 7.5129 1.6276 37 1 1.3572 5.9834 2.4137 38 1 2.7848 6.0451 1.3525 39 1 -1.1401 6.3626 -0.3208 40 1 -0.9348 6.1689 1.4367 41 1 -0.4759 7.6984 0.6498 42 1 3.2692 -1.0693 0.0009 43 1 0.7609 -2.2924 -1.2372 44 1 2.0699 -1.4902 -2.1392 45 1 3.6851 -3.1635 -1.3659 46 1 2.2935 -4.0013 -2.0971 47 1 3.4858 -6.4519 2.6318 48 1 3.6847 -3.1626 1.3688 49 1 2.2924 -3.9977 2.1014 50 1 2.0697 -1.4885 2.1405 51 1 0.7608 -2.2914 1.2390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005647653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:18 Heat of formation + Delta-G solvation = 66.501945 kcal Electronic energy + Delta-G solvation = -29551.302566 eV Core-core repulsion = 25681.284329 eV Total energy + Delta-G solvation = -3870.018237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.85624 -39.84289 -37.46130 -37.19000 -35.35605 -32.77911 -31.24711 -31.08280 -30.07289 -29.46846 -27.56846 -27.47960 -27.30452 -25.36683 -23.41439 -22.94536 -22.22095 -21.46463 -20.51153 -19.18550 -18.88123 -17.72600 -16.88510 -16.40654 -16.08146 -15.88007 -15.07243 -14.97944 -14.81572 -14.24746 -14.11419 -13.96540 -13.68320 -13.62765 -13.61447 -13.24206 -13.07661 -12.63913 -12.53006 -12.48650 -12.39593 -12.27905 -11.88618 -11.58741 -11.54200 -11.31623 -11.24384 -11.03112 -10.93311 -10.83736 -10.71546 -10.39589 -10.27839 -10.12709 -9.99727 -9.85491 -9.64927 -9.30588 -9.25260 -8.61587 -8.44363 -6.62225 -5.84395 -3.37987 1.16679 2.38627 2.60533 2.91647 3.16954 3.33524 3.40166 3.40803 4.10143 4.31140 4.42823 4.52502 4.64658 4.76093 4.91991 4.99164 5.08603 5.20693 5.31968 5.33639 5.39059 5.39844 5.44513 5.47534 5.53137 5.53915 5.56551 5.67069 5.68009 5.76975 5.82707 5.90183 6.01160 6.07442 6.08631 6.12357 6.25191 6.32515 6.41909 6.47124 6.57614 6.70811 6.72796 6.83628 6.90224 7.29034 7.37114 7.72634 7.74038 7.81402 8.06689 8.46912 9.18612 9.76963 10.36975 11.22118 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.033598 B = 0.002189 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.182566 B =12786.040506 C =12877.829715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.602 5.602 3 C 0.585 3.415 4 O -0.521 6.521 5 C -0.029 4.029 6 C -0.152 4.152 7 C 0.038 3.962 8 C 0.017 3.983 9 C -0.138 4.138 10 C -0.140 4.140 11 C -0.134 4.134 12 N -0.273 5.273 13 N -0.387 5.387 14 H 0.446 0.554 15 C 0.145 3.855 16 C -0.138 4.138 17 C 0.148 3.852 18 N -0.594 5.594 19 C -0.256 4.256 20 H 0.064 0.936 21 C 0.009 3.991 22 N -0.903 5.903 23 Si 0.904 3.096 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.170 3.830 28 C -0.147 4.147 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.161 0.839 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.021 0.979 46 H 0.058 0.942 47 H 0.256 0.744 48 H 0.019 0.981 49 H 0.103 0.897 50 H 0.051 0.949 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.426 22.825 -3.130 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.335 5.335 3 C 0.371 3.629 4 O -0.396 6.396 5 C -0.157 4.157 6 C -0.181 4.181 7 C -0.120 4.120 8 C 0.015 3.985 9 C -0.196 4.196 10 C -0.197 4.197 11 C -0.192 4.192 12 N -0.106 5.106 13 N -0.111 5.111 14 H 0.300 0.700 15 C 0.044 3.956 16 C -0.178 4.178 17 C 0.020 3.980 18 N -0.317 5.317 19 C -0.386 4.386 20 H 0.081 0.919 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.734 3.266 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.044 3.956 28 C -0.187 4.187 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.179 0.821 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.037 0.963 49 H 0.121 0.879 50 H 0.070 0.930 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.841 22.724 -3.161 24.246 hybrid contribution 0.124 -1.477 0.034 1.482 sum -7.717 21.247 -3.127 22.821 Atomic orbital electron populations 1.22127 0.81230 1.04445 1.01188 1.48106 1.06377 1.06623 1.72366 1.17099 0.86816 0.81751 0.77239 1.90835 1.12364 1.86348 1.50027 1.21827 0.85041 0.96526 1.12322 1.21973 1.00667 0.89481 1.05949 1.21884 0.88905 0.96336 1.04919 1.18904 0.96960 0.86215 0.96430 1.21871 1.01110 1.00294 0.96299 1.21884 0.99580 1.01437 0.96839 1.21764 0.94905 1.00107 1.02398 1.73040 1.27434 0.90521 1.19612 1.44897 1.07101 1.06763 1.52323 0.69974 1.21333 0.97335 0.80156 0.96762 1.22388 1.01385 0.98207 0.95846 1.20890 0.95816 0.90741 0.90511 1.44028 1.77804 1.10506 0.99335 1.19131 1.21022 0.85325 1.13091 0.91851 1.25346 0.97151 0.98025 0.98435 1.69881 1.36906 1.33869 1.14050 0.86273 0.78170 0.85240 0.76951 1.21226 1.21642 1.20456 1.20950 0.95144 0.88368 0.91164 1.22641 1.01637 0.99360 0.95110 0.92074 0.88378 0.91652 0.82096 0.92152 0.92523 0.91940 0.91911 0.92376 0.92019 0.92063 0.92505 0.92492 0.88279 0.92153 0.92924 0.96093 0.92367 0.93395 0.96306 0.87867 0.93022 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 7.96 59.85 0.48 1.03 16 2 N -0.60 -8.59 2.76 -175.25 -0.48 -9.08 16 3 C 0.58 9.08 7.66 -12.64 -0.10 8.98 16 4 O -0.52 -9.89 16.26 5.25 0.09 -9.80 16 5 C -0.03 -0.38 6.73 -82.06 -0.55 -0.93 16 6 C -0.15 -1.87 10.15 -38.98 -0.40 -2.27 16 7 C 0.04 0.42 5.64 -82.47 -0.47 -0.04 16 8 C 0.02 0.14 0.96 -155.66 -0.15 -0.01 16 9 C -0.14 -1.03 8.46 37.16 0.31 -0.72 16 10 C -0.14 -1.03 8.21 37.16 0.30 -0.72 16 11 C -0.13 -1.05 8.04 37.16 0.30 -0.75 16 12 N -0.27 -3.17 11.48 33.64 0.39 -2.78 16 13 N -0.39 -4.23 5.95 33.48 0.20 -4.03 16 14 H 0.45 3.77 4.98 -190.46 -0.95 2.82 16 15 C 0.15 2.49 2.47 -67.89 -0.17 2.32 16 16 C -0.14 -2.33 5.34 -26.61 -0.14 -2.47 16 17 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 18 N -0.59 -14.44 3.00 -172.32 -0.52 -14.95 16 19 C -0.26 -6.80 9.55 -15.06 -0.14 -6.95 16 20 H 0.06 1.65 7.83 -52.48 -0.41 1.24 16 21 C 0.01 0.25 5.31 -17.43 -0.09 0.16 16 22 N -0.90 -25.54 10.65 55.49 0.59 -24.95 16 23 Si 0.90 21.16 29.55 -169.99 -5.02 16.14 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.17 3.97 5.25 -3.71 -0.02 3.96 16 28 C -0.15 -2.74 5.32 -26.62 -0.14 -2.88 16 29 H 0.06 0.50 7.76 -51.93 -0.40 0.10 16 30 H 0.10 1.03 6.47 -51.93 -0.34 0.69 16 31 H 0.07 0.56 5.20 -51.93 -0.27 0.29 16 32 H 0.16 1.86 7.80 -52.48 -0.41 1.45 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.45 7.61 -51.93 -0.39 0.06 16 39 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.10 1.94 6.90 -51.92 -0.36 1.59 16 43 H 0.06 0.98 7.72 -51.93 -0.40 0.58 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 47 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 49 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 50 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 51 H 0.06 1.02 6.73 -51.93 -0.35 0.67 16 LS Contribution 393.38 15.07 5.93 5.93 Total: -1.00 -31.20 393.38 -9.04 -40.24 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -9.21 Total: 1.58 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.00 Total: 1.71 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.18 Total: -55.78 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.20 -9.04 -40.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005647653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.738 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds