Wall clock time and date at job start Tue Mar 31 2020 20:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34782 * 119.99857 * 2 1 4 4 O 1.21629 * 119.99704 * 180.86836 * 3 2 1 5 5 C 1.47158 * 119.99930 * 0.86757 * 3 2 1 6 6 C 1.38410 * 126.88074 * 169.74531 * 5 3 2 7 7 C 1.39677 * 105.35569 * 180.13999 * 6 5 3 8 8 C 1.50705 * 126.06423 * 179.85250 * 7 6 5 9 9 C 1.52998 * 109.47195 * 74.71580 * 8 7 6 10 10 C 1.52997 * 109.47204 * 314.71169 * 8 7 6 11 11 C 1.53001 * 109.46553 * 194.71530 * 8 7 6 12 12 N 1.30862 * 107.86418 * 359.58855 * 7 6 5 13 13 N 1.28442 * 110.92613 * 0.26083 * 12 7 6 14 14 H 0.97001 * 125.19273 * 180.02562 * 13 12 7 15 15 C 1.46501 * 119.99758 * 179.97438 * 2 1 3 16 16 C 1.53033 * 109.45756 * 60.03382 * 15 2 1 17 17 C 1.53196 * 109.31111 * 178.59810 * 16 15 2 18 18 N 1.46924 * 108.76408 * 54.65380 * 17 16 15 19 19 C 1.36934 * 120.63138 * 126.40876 * 18 17 16 20 20 H 1.08003 * 119.99854 * 324.41369 * 19 18 17 21 21 C 1.38810 * 120.00210 * 144.41825 * 19 18 17 22 22 N 1.31618 * 119.99942 * 3.64905 * 21 19 18 23 23 Si 1.86797 * 120.00036 * 183.65203 * 21 19 18 24 24 H 1.48501 * 109.47185 * 89.99800 * 23 21 19 25 25 H 1.48501 * 109.47236 * 209.99777 * 23 21 19 26 26 H 1.48504 * 109.47380 * 329.99747 * 23 21 19 27 27 C 1.46926 * 118.74089 * 306.38480 * 18 17 16 28 28 C 1.53036 * 109.46303 * 299.97446 * 15 2 1 29 29 H 1.08999 * 109.46824 * 83.30409 * 1 2 3 30 30 H 1.08996 * 109.47158 * 203.30124 * 1 2 3 31 31 H 1.09007 * 109.47267 * 323.30653 * 1 2 3 32 32 H 1.08004 * 127.32199 * 359.97438 * 6 5 3 33 33 H 1.09003 * 109.46846 * 299.99601 * 9 8 7 34 34 H 1.08996 * 109.47024 * 59.99597 * 9 8 7 35 35 H 1.08998 * 109.46879 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.47360 * 180.02562 * 10 8 7 37 37 H 1.08997 * 109.47186 * 300.00604 * 10 8 7 38 38 H 1.09003 * 109.47210 * 60.00171 * 10 8 7 39 39 H 1.08997 * 109.47436 * 299.99364 * 11 8 7 40 40 H 1.08998 * 109.47566 * 60.00166 * 11 8 7 41 41 H 1.09011 * 109.46753 * 180.02562 * 11 8 7 42 42 H 1.09010 * 109.45361 * 180.02562 * 15 2 1 43 43 H 1.08998 * 109.49763 * 298.56054 * 16 15 2 44 44 H 1.08999 * 109.50211 * 58.66201 * 16 15 2 45 45 H 1.08998 * 109.59804 * 294.86738 * 17 16 15 46 46 H 1.09004 * 109.70195 * 174.50488 * 17 16 15 47 47 H 0.97003 * 119.99654 * 180.02562 * 22 21 19 48 48 H 1.09010 * 109.58640 * 293.82528 * 27 18 17 49 49 H 1.08992 * 109.70682 * 173.47004 * 27 18 17 50 50 H 1.09003 * 109.49780 * 301.33968 * 28 15 2 51 51 H 1.09001 * 109.49631 * 61.43159 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3551 1.1673 -0.0160 5 6 1.4032 2.4416 0.0193 6 6 1.9339 3.7042 0.2190 7 6 0.8459 4.5776 0.1519 8 6 0.8994 6.0753 0.3107 9 6 1.4894 6.7016 -0.9544 10 6 1.7775 6.4297 1.5125 11 6 -0.5145 6.6150 0.5354 12 7 -0.2272 3.8651 -0.0790 13 7 0.0606 2.6161 -0.1623 14 1 -0.5779 1.9052 -0.3289 15 6 2.1975 -1.2688 0.0006 16 6 1.8282 -2.0711 -1.2491 17 6 2.6220 -3.3813 -1.2629 18 7 2.3849 -4.0909 0.0015 19 6 1.9519 -5.3900 0.0019 20 1 1.2651 -5.7305 -0.7589 21 6 2.3957 -6.2693 0.9801 22 7 3.1754 -5.8373 1.9485 23 14 1.8864 -8.0655 0.9220 24 1 2.8787 -8.8361 0.1303 25 1 1.8262 -8.6079 2.3031 26 1 0.5492 -8.1807 0.2863 27 6 2.6216 -3.3805 1.2656 28 6 1.8281 -2.0702 1.2508 29 1 -0.3633 0.1198 -1.0207 30 1 -0.3633 -0.9438 0.4065 31 1 -0.3634 0.8241 0.6141 32 1 2.9688 3.9595 0.3928 33 1 2.4967 6.3170 -1.1144 34 1 0.8638 6.4490 -1.8105 35 1 1.5276 7.7848 -0.8397 36 1 1.8158 7.5129 1.6276 37 1 1.3572 5.9834 2.4137 38 1 2.7848 6.0451 1.3525 39 1 -1.1401 6.3626 -0.3208 40 1 -0.9348 6.1689 1.4367 41 1 -0.4759 7.6984 0.6498 42 1 3.2692 -1.0693 0.0009 43 1 0.7609 -2.2924 -1.2372 44 1 2.0699 -1.4902 -2.1392 45 1 3.6851 -3.1635 -1.3659 46 1 2.2935 -4.0013 -2.0971 47 1 3.4858 -6.4519 2.6318 48 1 3.6847 -3.1626 1.3688 49 1 2.2924 -3.9977 2.1014 50 1 2.0697 -1.4885 2.1405 51 1 0.7608 -2.2914 1.2390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005647653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:17 Heat of formation + Delta-G solvation = 48.547454 kcal Electronic energy + Delta-G solvation = -29552.081131 eV Core-core repulsion = 25681.284329 eV Total energy + Delta-G solvation = -3870.796802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.77887 -41.09840 -39.00610 -37.88951 -36.76987 -34.47747 -32.49664 -32.16023 -31.63609 -30.96478 -28.40530 -28.10558 -28.04883 -27.09740 -24.81425 -23.87857 -23.77694 -22.84809 -21.61953 -20.65146 -19.82054 -18.80607 -18.67857 -17.64157 -17.19750 -16.91575 -16.74212 -15.99278 -15.88317 -15.56356 -15.35696 -15.03904 -14.86979 -14.79211 -14.68878 -14.48718 -14.34471 -14.12252 -14.09905 -13.32595 -13.24186 -13.06690 -12.93105 -12.82949 -12.77788 -12.57042 -12.48315 -12.32055 -12.10374 -11.98432 -11.98023 -11.92163 -11.86408 -11.56813 -11.50221 -11.37675 -11.15703 -10.56921 -10.28331 -10.14688 -9.76089 -8.59898 -7.88012 -5.44910 0.12663 1.47244 1.48691 1.49007 1.57223 1.58380 1.88985 2.06772 2.49122 3.17104 3.28800 3.44131 3.65646 3.80212 3.82537 3.84185 3.99814 4.14894 4.20881 4.27328 4.31642 4.35559 4.42411 4.45108 4.53129 4.63522 4.68111 4.74546 4.84052 4.86442 4.88492 4.97582 4.98875 5.02726 5.09553 5.10467 5.12092 5.16586 5.27694 5.28388 5.38721 5.49169 5.49545 5.49838 5.52224 5.63904 5.76568 5.93616 6.16516 6.44442 6.81954 6.96645 7.16029 7.81904 8.37496 9.16655 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.033598 B = 0.002189 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.182566 B =12786.040506 C =12877.829715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.598 5.598 3 C 0.584 3.416 4 O -0.565 6.565 5 C -0.041 4.041 6 C -0.158 4.158 7 C 0.037 3.963 8 C 0.014 3.986 9 C -0.135 4.135 10 C -0.138 4.138 11 C -0.131 4.131 12 N -0.275 5.275 13 N -0.373 5.373 14 H 0.456 0.544 15 C 0.156 3.844 16 C -0.121 4.121 17 C 0.143 3.857 18 N -0.610 5.610 19 C -0.263 4.263 20 H 0.070 0.930 21 C -0.046 4.046 22 N -0.935 5.935 23 Si 0.970 3.030 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.265 1.265 27 C 0.177 3.823 28 C -0.130 4.130 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.008 0.992 46 H 0.065 0.935 47 H 0.250 0.750 48 H -0.013 1.013 49 H 0.072 0.928 50 H 0.055 0.945 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.733 24.487 -4.181 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.329 5.329 3 C 0.372 3.628 4 O -0.443 6.443 5 C -0.169 4.169 6 C -0.187 4.187 7 C -0.120 4.120 8 C 0.012 3.988 9 C -0.193 4.193 10 C -0.196 4.196 11 C -0.188 4.188 12 N -0.108 5.108 13 N -0.099 5.099 14 H 0.313 0.687 15 C 0.053 3.947 16 C -0.161 4.161 17 C 0.017 3.983 18 N -0.334 5.334 19 C -0.393 4.393 20 H 0.088 0.912 21 C -0.242 4.242 22 N -0.581 5.581 23 Si 0.798 3.202 24 H -0.214 1.214 25 H -0.221 1.221 26 H -0.190 1.190 27 C 0.051 3.949 28 C -0.170 4.170 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.180 0.820 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.026 0.974 46 H 0.084 0.916 47 H 0.060 0.940 48 H 0.005 0.995 49 H 0.090 0.910 50 H 0.073 0.927 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.209 24.401 -4.240 26.788 hybrid contribution 0.846 -1.931 0.341 2.135 sum -9.364 22.470 -3.899 24.653 Atomic orbital electron populations 1.22443 0.78305 1.05382 1.03557 1.47978 1.08047 1.05125 1.71770 1.17364 0.86408 0.82583 0.76413 1.90813 1.14341 1.87005 1.52141 1.21473 0.85946 0.95505 1.14001 1.22164 1.01254 0.89659 1.05664 1.22308 0.88133 0.97567 1.04031 1.19070 0.97795 0.84588 0.97361 1.21860 1.00540 1.01501 0.95423 1.21884 0.99063 1.02695 0.95948 1.21737 0.94101 1.01309 1.01646 1.73057 1.27571 0.90679 1.19529 1.44889 1.06397 1.06957 1.51670 0.68719 1.20923 0.96247 0.81368 0.96171 1.22180 1.01488 0.96142 0.96317 1.21019 0.95835 0.92353 0.89070 1.44256 1.77979 1.10503 1.00667 1.19480 1.20756 0.86335 1.12731 0.91213 1.26106 0.97757 1.01912 0.98413 1.70083 1.38503 1.34770 1.14728 0.85239 0.78221 0.80303 0.76475 1.21408 1.22132 1.18981 1.20658 0.93935 0.90092 0.90233 1.22351 1.01388 0.96980 0.96250 0.89122 0.88134 0.89908 0.81967 0.92583 0.93212 0.89925 0.89945 0.93115 0.92293 0.92764 0.93270 0.90528 0.91176 0.90561 0.90961 0.97365 0.91624 0.94007 0.99464 0.90957 0.92677 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.78 7.96 127.77 1.02 1.80 16 2 N -0.60 -16.14 2.76 -826.62 -2.28 -18.43 16 3 C 0.58 17.76 7.66 86.58 0.66 18.42 16 4 O -0.57 -21.83 16.26 -4.12 -0.07 -21.89 16 5 C -0.04 -1.02 6.73 40.79 0.27 -0.74 16 6 C -0.16 -3.75 10.15 22.66 0.23 -3.52 16 7 C 0.04 0.77 5.64 43.05 0.24 1.01 16 8 C 0.01 0.21 0.96 -52.93 -0.05 0.15 16 9 C -0.14 -1.74 8.46 71.98 0.61 -1.13 16 10 C -0.14 -1.78 8.21 71.98 0.59 -1.19 16 11 C -0.13 -1.74 8.04 71.98 0.58 -1.16 16 12 N -0.28 -5.81 11.48 -47.49 -0.54 -6.35 16 13 N -0.37 -7.31 5.95 -48.00 -0.29 -7.59 16 14 H 0.46 6.32 4.98 -220.01 -1.09 5.22 16 15 C 0.16 5.25 2.47 45.01 0.11 5.36 16 16 C -0.12 -3.88 5.34 30.67 0.16 -3.72 16 17 C 0.14 5.82 6.52 86.36 0.56 6.39 16 18 N -0.61 -30.03 3.00 -699.10 -2.10 -32.12 16 19 C -0.26 -14.00 9.55 84.03 0.80 -13.20 16 20 H 0.07 3.57 7.83 -2.91 -0.02 3.54 16 21 C -0.05 -2.54 5.31 84.86 0.45 -2.09 16 22 N -0.94 -54.62 10.65 21.65 0.23 -54.39 16 23 Si 0.97 43.84 29.55 68.60 2.03 45.87 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 27 C 0.18 8.58 5.25 86.36 0.45 9.04 16 28 C -0.13 -4.81 5.32 30.67 0.16 -4.64 16 29 H 0.09 1.09 7.76 -2.39 -0.02 1.07 16 30 H 0.10 1.76 6.47 -2.39 -0.02 1.75 16 31 H 0.08 1.16 5.20 -2.38 -0.01 1.15 16 32 H 0.16 3.71 7.80 -2.91 -0.02 3.69 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.79 7.61 -2.39 -0.02 0.77 16 39 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 40 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.07 2.82 6.90 -2.38 -0.02 2.81 16 43 H 0.08 2.24 7.72 -2.39 -0.02 2.22 16 44 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.07 2.54 7.93 -2.38 -0.02 2.52 16 47 H 0.25 14.22 8.31 -92.71 -0.77 13.44 16 48 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 49 H 0.07 3.96 5.95 -2.39 -0.01 3.94 16 50 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.07 2.43 6.73 -2.39 -0.02 2.42 16 Total: -1.00 -69.41 393.38 3.67 -65.74 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.17 Total: 18.40 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 6.86 Total: 10.77 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -4.98 Total: -118.89 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.07 Total: -21.89 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.41 3.67 -65.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005647653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.288 kcal (2) G-P(sol) polarization free energy of solvation -69.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds