Wall clock time and date at job start Tue Mar 31 2020 20:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34771 * 120.00054 * 2 1 4 4 O 1.21283 * 119.99659 * 174.99773 * 3 2 1 5 5 C 1.50694 * 120.00136 * 355.00245 * 3 2 1 6 6 C 1.52999 * 109.47343 * 59.54912 * 5 3 2 7 7 C 1.53001 * 109.47164 * 179.54478 * 5 3 2 8 8 C 1.50697 * 109.47562 * 299.54429 * 5 3 2 9 9 C 1.39867 * 126.03533 * 351.79466 * 8 5 3 10 10 N 1.30843 * 108.20383 * 179.81288 * 9 8 5 11 11 N 1.40089 * 108.20188 * 0.44144 * 10 9 8 12 12 C 1.46495 * 126.03675 * 179.69670 * 11 10 9 13 13 C 1.34951 * 107.92241 * 359.71511 * 11 10 9 14 14 C 1.46500 * 119.99452 * 180.02562 * 2 1 3 15 15 C 1.53041 * 109.46260 * 59.99744 * 14 2 1 16 16 C 1.53187 * 109.31452 * 178.61131 * 15 14 2 17 17 N 1.46930 * 108.89273 * 54.56511 * 16 15 14 18 18 C 1.36940 * 120.63106 * 126.46768 * 17 16 15 19 19 H 1.07994 * 119.99637 * 334.17372 * 18 17 16 20 20 C 1.38810 * 119.99782 * 154.17201 * 18 17 16 21 21 N 1.31618 * 119.99908 * 162.82766 * 20 18 17 22 22 Si 1.86802 * 120.00414 * 342.83434 * 20 18 17 23 23 H 1.48495 * 109.47320 * 95.49394 * 22 20 18 24 24 H 1.48501 * 109.47204 * 215.50126 * 22 20 18 25 25 H 1.48509 * 109.46776 * 335.49471 * 22 20 18 26 26 C 1.46962 * 118.71187 * 306.64239 * 17 16 15 27 27 C 1.53032 * 109.46169 * 299.92802 * 14 2 1 28 28 H 1.09001 * 109.46369 * 266.25728 * 1 2 3 29 29 H 1.09004 * 109.46668 * 26.24927 * 1 2 3 30 30 H 1.08993 * 109.47223 * 146.25314 * 1 2 3 31 31 H 1.09001 * 109.47161 * 52.99036 * 6 5 3 32 32 H 1.08999 * 109.47551 * 172.99864 * 6 5 3 33 33 H 1.09005 * 109.46935 * 292.99257 * 6 5 3 34 34 H 1.08997 * 109.47132 * 59.99894 * 7 5 3 35 35 H 1.08999 * 109.47485 * 179.97438 * 7 5 3 36 36 H 1.09006 * 109.47378 * 300.00270 * 7 5 3 37 37 H 1.08003 * 125.90096 * 359.97438 * 9 8 5 38 38 H 1.08993 * 109.47346 * 270.01878 * 12 11 10 39 39 H 1.09005 * 109.47256 * 30.02413 * 12 11 10 40 40 H 1.09001 * 109.46717 * 150.01794 * 12 11 10 41 41 H 1.08000 * 126.12180 * 179.97438 * 13 11 10 42 42 H 1.09003 * 109.45938 * 179.97438 * 14 2 1 43 43 H 1.09000 * 109.49681 * 58.66190 * 15 14 2 44 44 H 1.08999 * 109.52655 * 298.58119 * 15 14 2 45 45 H 1.09001 * 109.58900 * 174.42457 * 16 15 14 46 46 H 1.09004 * 109.59181 * 294.70760 * 16 15 14 47 47 H 0.97003 * 119.99994 * 180.02562 * 21 20 18 48 48 H 1.09005 * 109.46757 * 293.56975 * 26 17 16 49 49 H 1.09004 * 109.71133 * 173.28623 * 26 17 16 50 50 H 1.08997 * 109.50118 * 301.33922 * 27 14 2 51 51 H 1.09000 * 109.50358 * 61.43647 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3483 1.1691 0.0916 5 6 1.3898 2.4697 -0.1137 6 6 0.4105 2.5986 1.0548 7 6 2.3823 3.6336 -0.0779 8 6 0.6277 2.4993 -1.4134 9 6 0.7291 1.5637 -2.4481 10 7 -0.0871 1.9230 -3.4056 11 7 -0.7271 3.1060 -3.0140 12 6 -1.7161 3.8508 -3.7971 13 6 -0.2712 3.4386 -1.7881 14 6 2.1975 -1.2688 -0.0006 15 6 1.8275 -2.0706 -1.2505 16 6 2.6210 -3.3808 -1.2653 17 7 2.3879 -4.0925 -0.0012 18 6 1.9570 -5.3923 -0.0015 19 1 1.3987 -5.7759 -0.8427 20 6 2.2378 -6.2168 1.0793 21 7 1.5608 -7.3327 1.2491 22 14 3.5765 -5.7427 2.2928 23 1 2.9681 -5.0423 3.4523 24 1 4.2737 -6.9664 2.7638 25 1 4.5520 -4.8425 1.6269 26 6 2.6224 -3.3811 1.2632 27 6 1.8289 -2.0708 1.2496 28 1 -0.3632 -0.0671 1.0255 29 1 -0.3633 0.9217 -0.4545 30 1 -0.3633 -0.8544 -0.5708 31 1 0.9443 2.4529 1.9939 32 1 -0.0405 3.5908 1.0432 33 1 -0.3700 1.8437 0.9596 34 1 3.0800 3.5419 -0.9103 35 1 1.8405 4.5758 -0.1606 36 1 2.9336 3.6124 0.8622 37 1 1.3685 0.6933 -2.4545 38 1 -1.2072 4.5854 -4.4210 39 1 -2.2732 3.1600 -4.4301 40 1 -2.4040 4.3609 -3.1228 41 1 -0.5701 4.3005 -1.2099 42 1 3.2691 -1.0695 -0.0009 43 1 2.0688 -1.4891 -2.1403 44 1 0.7602 -2.2917 -1.2388 45 1 2.2896 -3.9994 -2.0994 46 1 3.6838 -3.1632 -1.3715 47 1 1.7568 -7.9087 2.0046 48 1 3.6856 -3.1634 1.3657 49 1 2.2937 -3.9987 2.0990 50 1 2.0711 -1.4896 2.1393 51 1 0.7616 -2.2920 1.2385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006237038.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:19 Heat of formation + Delta-G solvation = 86.844026 kcal Electronic energy + Delta-G solvation = -30901.094400 eV Core-core repulsion = 27031.958262 eV Total energy + Delta-G solvation = -3869.136138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.90468 -40.08894 -37.84419 -35.69833 -35.12810 -33.20568 -32.33044 -30.46279 -30.31183 -29.63685 -27.65955 -27.10312 -26.63397 -25.28677 -23.48416 -22.81264 -21.84244 -21.31084 -20.49266 -19.13203 -18.77338 -17.66844 -16.80621 -16.47117 -15.76016 -15.74150 -15.30281 -15.10667 -14.73405 -14.21715 -14.10079 -13.94549 -13.75172 -13.66840 -13.34518 -13.07367 -13.02880 -12.89322 -12.70084 -12.60302 -12.40509 -12.31932 -12.15301 -11.96065 -11.86418 -11.73348 -11.67761 -11.12964 -10.90816 -10.80676 -10.67657 -10.46502 -10.13452 -9.99072 -9.75549 -9.66763 -9.47707 -9.36701 -8.66427 -8.60179 -8.35692 -6.97411 -5.90487 -3.27791 1.60009 2.21960 2.51826 2.74742 3.12555 3.34650 3.52117 3.53947 4.16509 4.34178 4.55280 4.56000 4.68411 4.76092 4.88122 4.90264 4.98868 5.01028 5.05219 5.26678 5.26964 5.32365 5.36927 5.41364 5.42581 5.54511 5.59571 5.61959 5.69838 5.73644 5.82775 5.85526 5.86842 5.98940 6.07850 6.11549 6.15539 6.21524 6.35977 6.38036 6.45172 6.59698 6.63681 6.68984 6.70628 6.81886 6.94520 7.43457 7.57179 7.97245 8.30963 8.35168 8.95876 9.74781 10.11477 11.25506 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019725 B = 0.003218 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.154223 B = 8697.936638 C = 9411.368041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.602 5.602 3 C 0.525 3.475 4 O -0.540 6.540 5 C 0.000 4.000 6 C -0.153 4.153 7 C -0.121 4.121 8 C -0.224 4.224 9 C 0.062 3.938 10 N -0.290 5.290 11 N -0.378 5.378 12 C 0.102 3.898 13 C 0.064 3.936 14 C 0.144 3.856 15 C -0.141 4.141 16 C 0.153 3.847 17 N -0.607 5.607 18 C -0.256 4.256 19 H 0.087 0.913 20 C 0.019 3.981 21 N -0.914 5.914 22 Si 0.886 3.114 23 H -0.291 1.291 24 H -0.305 1.305 25 H -0.266 1.266 26 C 0.127 3.873 27 C -0.138 4.138 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.181 0.819 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.174 0.826 42 H 0.096 0.904 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.025 0.975 47 H 0.262 0.738 48 H 0.031 0.969 49 H 0.072 0.928 50 H 0.055 0.945 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.502 27.114 -5.067 28.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.334 5.334 3 C 0.312 3.688 4 O -0.417 6.417 5 C -0.005 4.005 6 C -0.210 4.210 7 C -0.179 4.179 8 C -0.236 4.236 9 C -0.124 4.124 10 N -0.111 5.111 11 N -0.160 5.160 12 C -0.039 4.039 13 C -0.082 4.082 14 C 0.042 3.958 15 C -0.181 4.181 16 C 0.026 3.974 17 N -0.331 5.331 18 C -0.385 4.385 19 H 0.105 0.895 20 C -0.179 4.179 21 N -0.558 5.558 22 Si 0.718 3.282 23 H -0.219 1.219 24 H -0.234 1.234 25 H -0.191 1.191 26 C 0.001 3.999 27 C -0.179 4.179 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.198 0.802 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.191 0.809 42 H 0.114 0.886 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.048 0.952 49 H 0.090 0.910 50 H 0.074 0.926 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.473 26.739 -6.213 28.451 hybrid contribution 0.810 0.336 1.622 1.844 sum -6.663 27.076 -4.591 28.259 Atomic orbital electron populations 1.22222 0.80173 1.03787 1.01705 1.48011 1.06903 1.05950 1.72531 1.20371 0.87613 0.85002 0.75797 1.90681 1.14137 1.87150 1.49768 1.19034 0.95091 0.94018 0.92313 1.22227 0.99057 1.03001 0.96695 1.21653 0.97973 0.95085 1.03142 1.19616 1.05891 0.99508 0.98618 1.23941 0.97796 0.99741 0.90945 1.77462 1.11995 0.98415 1.23220 1.48481 1.33861 1.19848 1.13797 1.21848 0.89931 0.95868 0.96245 1.22133 0.97790 1.00344 0.87951 1.21126 0.97414 0.81390 0.95852 1.22386 1.01824 0.97785 0.96056 1.20858 0.96079 0.91006 0.89435 1.44385 1.78621 1.10699 0.99377 1.18953 1.28391 0.84874 1.06256 0.89523 1.25241 0.98693 0.95544 0.98405 1.69797 1.40904 1.14213 1.30843 0.86938 0.83889 0.76347 0.81026 1.21897 1.23396 1.19123 1.21381 0.96631 0.91608 0.90270 1.22352 1.01812 0.97404 0.96287 0.92734 0.89570 0.91019 0.91879 0.91776 0.90587 0.91927 0.92428 0.91809 0.80243 0.90803 0.89197 0.89511 0.80934 0.88595 0.92552 0.91504 0.91536 0.95687 0.92826 0.95162 0.91001 0.92611 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 7.00 59.85 0.42 1.15 16 2 N -0.60 -8.31 2.13 -173.89 -0.37 -8.68 16 3 C 0.52 7.45 5.58 -10.99 -0.06 7.39 16 4 O -0.54 -9.68 15.32 5.56 0.09 -9.59 16 5 C 0.00 0.00 0.67 -156.82 -0.11 -0.11 16 6 C -0.15 -1.26 7.79 37.16 0.29 -0.97 16 7 C -0.12 -1.21 7.71 37.16 0.29 -0.92 16 8 C -0.22 -2.25 2.92 -105.06 -0.31 -2.56 16 9 C 0.06 0.75 9.42 -17.36 -0.16 0.59 16 10 N -0.29 -3.53 12.58 30.63 0.39 -3.15 16 11 N -0.38 -3.32 4.01 -68.17 -0.27 -3.60 16 12 C 0.10 0.46 11.47 59.84 0.69 1.15 16 13 C 0.06 0.50 10.94 -17.22 -0.19 0.31 16 14 C 0.14 2.39 2.48 -67.89 -0.17 2.22 16 15 C -0.14 -2.31 5.30 -26.61 -0.14 -2.46 16 16 C 0.15 3.03 6.51 -3.71 -0.02 3.00 16 17 N -0.61 -14.47 2.82 -172.29 -0.49 -14.96 16 18 C -0.26 -7.19 10.09 -15.06 -0.15 -7.34 16 19 H 0.09 2.58 8.05 -52.49 -0.42 2.16 16 20 C 0.02 0.57 5.32 -17.43 -0.09 0.47 16 21 N -0.91 -28.28 13.97 55.49 0.78 -27.51 16 22 Si 0.89 22.82 24.29 -169.99 -4.13 18.69 16 23 H -0.29 -7.25 6.73 56.52 0.38 -6.87 16 24 H -0.31 -8.02 7.11 56.52 0.40 -7.62 16 25 H -0.27 -6.71 6.04 56.52 0.34 -6.37 16 26 C 0.13 2.82 4.14 -3.69 -0.02 2.81 16 27 C -0.14 -2.51 5.34 -26.62 -0.14 -2.65 16 28 H 0.05 0.58 7.57 -51.93 -0.39 0.19 16 29 H 0.09 0.87 3.31 -51.93 -0.17 0.70 16 30 H 0.07 0.87 6.47 -51.93 -0.34 0.53 16 31 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.08 0.62 4.55 -51.93 -0.24 0.38 16 34 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.18 2.34 6.87 -52.48 -0.36 1.98 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.10 1.79 6.91 -51.93 -0.36 1.43 16 43 H 0.06 0.83 7.82 -51.93 -0.41 0.43 16 44 H 0.07 1.11 6.75 -51.93 -0.35 0.76 16 45 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 48 H 0.03 0.68 6.79 -51.93 -0.35 0.33 16 49 H 0.07 1.74 4.14 -51.93 -0.21 1.53 16 50 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.07 1.22 7.72 -51.93 -0.40 0.82 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -34.74 380.16 -6.44 -41.17 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.27 Total: -0.22 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 0.12 Total: 2.10 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.03 Total: -57.88 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.13 Total: 18.69 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.74 -6.44 -41.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006237038.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.017 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds