Wall clock time and date at job start Tue Mar 31 2020 20:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34771 * 120.00054 * 2 1 4 4 O 1.21283 * 119.99659 * 174.99773 * 3 2 1 5 5 C 1.50694 * 120.00136 * 355.00245 * 3 2 1 6 6 C 1.52999 * 109.47343 * 59.54912 * 5 3 2 7 7 C 1.53001 * 109.47164 * 179.54478 * 5 3 2 8 8 C 1.50697 * 109.47562 * 299.54429 * 5 3 2 9 9 C 1.39867 * 126.03533 * 351.79466 * 8 5 3 10 10 N 1.30843 * 108.20383 * 179.81288 * 9 8 5 11 11 N 1.40089 * 108.20188 * 0.44144 * 10 9 8 12 12 C 1.46495 * 126.03675 * 179.69670 * 11 10 9 13 13 C 1.34951 * 107.92241 * 359.71511 * 11 10 9 14 14 C 1.46500 * 119.99452 * 180.02562 * 2 1 3 15 15 C 1.53041 * 109.46260 * 59.99744 * 14 2 1 16 16 C 1.53187 * 109.31452 * 178.61131 * 15 14 2 17 17 N 1.46930 * 108.89273 * 54.56511 * 16 15 14 18 18 C 1.36940 * 120.63106 * 126.46768 * 17 16 15 19 19 H 1.07994 * 119.99637 * 334.17372 * 18 17 16 20 20 C 1.38810 * 119.99782 * 154.17201 * 18 17 16 21 21 N 1.31618 * 119.99908 * 162.82766 * 20 18 17 22 22 Si 1.86802 * 120.00414 * 342.83434 * 20 18 17 23 23 H 1.48495 * 109.47320 * 95.49394 * 22 20 18 24 24 H 1.48501 * 109.47204 * 215.50126 * 22 20 18 25 25 H 1.48509 * 109.46776 * 335.49471 * 22 20 18 26 26 C 1.46962 * 118.71187 * 306.64239 * 17 16 15 27 27 C 1.53032 * 109.46169 * 299.92802 * 14 2 1 28 28 H 1.09001 * 109.46369 * 266.25728 * 1 2 3 29 29 H 1.09004 * 109.46668 * 26.24927 * 1 2 3 30 30 H 1.08993 * 109.47223 * 146.25314 * 1 2 3 31 31 H 1.09001 * 109.47161 * 52.99036 * 6 5 3 32 32 H 1.08999 * 109.47551 * 172.99864 * 6 5 3 33 33 H 1.09005 * 109.46935 * 292.99257 * 6 5 3 34 34 H 1.08997 * 109.47132 * 59.99894 * 7 5 3 35 35 H 1.08999 * 109.47485 * 179.97438 * 7 5 3 36 36 H 1.09006 * 109.47378 * 300.00270 * 7 5 3 37 37 H 1.08003 * 125.90096 * 359.97438 * 9 8 5 38 38 H 1.08993 * 109.47346 * 270.01878 * 12 11 10 39 39 H 1.09005 * 109.47256 * 30.02413 * 12 11 10 40 40 H 1.09001 * 109.46717 * 150.01794 * 12 11 10 41 41 H 1.08000 * 126.12180 * 179.97438 * 13 11 10 42 42 H 1.09003 * 109.45938 * 179.97438 * 14 2 1 43 43 H 1.09000 * 109.49681 * 58.66190 * 15 14 2 44 44 H 1.08999 * 109.52655 * 298.58119 * 15 14 2 45 45 H 1.09001 * 109.58900 * 174.42457 * 16 15 14 46 46 H 1.09004 * 109.59181 * 294.70760 * 16 15 14 47 47 H 0.97003 * 119.99994 * 180.02562 * 21 20 18 48 48 H 1.09005 * 109.46757 * 293.56975 * 26 17 16 49 49 H 1.09004 * 109.71133 * 173.28623 * 26 17 16 50 50 H 1.08997 * 109.50118 * 301.33922 * 27 14 2 51 51 H 1.09000 * 109.50358 * 61.43647 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3483 1.1691 0.0916 5 6 1.3898 2.4697 -0.1137 6 6 0.4105 2.5986 1.0548 7 6 2.3823 3.6336 -0.0779 8 6 0.6277 2.4993 -1.4134 9 6 0.7291 1.5637 -2.4481 10 7 -0.0871 1.9230 -3.4056 11 7 -0.7271 3.1060 -3.0140 12 6 -1.7161 3.8508 -3.7971 13 6 -0.2712 3.4386 -1.7881 14 6 2.1975 -1.2688 -0.0006 15 6 1.8275 -2.0706 -1.2505 16 6 2.6210 -3.3808 -1.2653 17 7 2.3879 -4.0925 -0.0012 18 6 1.9570 -5.3923 -0.0015 19 1 1.3987 -5.7759 -0.8427 20 6 2.2378 -6.2168 1.0793 21 7 1.5608 -7.3327 1.2491 22 14 3.5765 -5.7427 2.2928 23 1 2.9681 -5.0423 3.4523 24 1 4.2737 -6.9664 2.7638 25 1 4.5520 -4.8425 1.6269 26 6 2.6224 -3.3811 1.2632 27 6 1.8289 -2.0708 1.2496 28 1 -0.3632 -0.0671 1.0255 29 1 -0.3633 0.9217 -0.4545 30 1 -0.3633 -0.8544 -0.5708 31 1 0.9443 2.4529 1.9939 32 1 -0.0405 3.5908 1.0432 33 1 -0.3700 1.8437 0.9596 34 1 3.0800 3.5419 -0.9103 35 1 1.8405 4.5758 -0.1606 36 1 2.9336 3.6124 0.8622 37 1 1.3685 0.6933 -2.4545 38 1 -1.2072 4.5854 -4.4210 39 1 -2.2732 3.1600 -4.4301 40 1 -2.4040 4.3609 -3.1228 41 1 -0.5701 4.3005 -1.2099 42 1 3.2691 -1.0695 -0.0009 43 1 2.0688 -1.4891 -2.1403 44 1 0.7602 -2.2917 -1.2388 45 1 2.2896 -3.9994 -2.0994 46 1 3.6838 -3.1632 -1.3715 47 1 1.7568 -7.9087 2.0046 48 1 3.6856 -3.1634 1.3657 49 1 2.2937 -3.9987 2.0990 50 1 2.0711 -1.4896 2.1393 51 1 0.7616 -2.2920 1.2385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006237038.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:17 Heat of formation + Delta-G solvation = 63.726135 kcal Electronic energy + Delta-G solvation = -30902.096867 eV Core-core repulsion = 27031.958262 eV Total energy + Delta-G solvation = -3870.138605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.67871 -41.15074 -39.36261 -36.77108 -36.40294 -34.23322 -33.81340 -32.10725 -32.02027 -30.32004 -28.54561 -27.72441 -27.51194 -26.92114 -24.83045 -24.33499 -23.17727 -22.21354 -21.42847 -20.57261 -19.74312 -18.84765 -18.43111 -17.71432 -17.11141 -16.55930 -16.37188 -16.23449 -16.00052 -15.54253 -15.36103 -15.26737 -14.92638 -14.67053 -14.58809 -14.42254 -14.08503 -13.89008 -13.83327 -13.65928 -13.47597 -13.41964 -13.21584 -13.04234 -13.01569 -12.69547 -12.66964 -12.48043 -12.45266 -12.21157 -11.99162 -11.85983 -11.72341 -11.44738 -11.40974 -11.31674 -10.84409 -10.56414 -10.35954 -9.58579 -9.26838 -8.99978 -8.16204 -5.49703 0.96076 1.27395 1.40441 1.48165 1.57311 1.73899 1.78492 2.01774 2.39477 3.05575 3.28600 3.40574 3.61077 3.77266 3.93877 4.01870 4.09543 4.19027 4.19684 4.22627 4.27706 4.32275 4.37609 4.45138 4.50900 4.58720 4.62965 4.65265 4.74618 4.78287 4.82365 4.83956 4.87297 4.90046 4.92075 4.98118 5.01923 5.03214 5.08164 5.13786 5.14779 5.32582 5.40337 5.41562 5.56556 5.60635 5.83937 6.11371 6.16942 6.47644 6.71395 6.87893 7.20631 7.59472 7.99737 9.03481 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019725 B = 0.003218 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.154223 B = 8697.936638 C = 9411.368041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.598 5.598 3 C 0.519 3.481 4 O -0.585 6.585 5 C 0.010 3.990 6 C -0.150 4.150 7 C -0.118 4.118 8 C -0.241 4.241 9 C 0.045 3.955 10 N -0.329 5.329 11 N -0.375 5.375 12 C 0.092 3.908 13 C 0.087 3.913 14 C 0.153 3.847 15 C -0.125 4.125 16 C 0.148 3.852 17 N -0.619 5.619 18 C -0.243 4.243 19 H 0.058 0.942 20 C -0.037 4.037 21 N -0.960 5.960 22 Si 0.946 3.054 23 H -0.278 1.278 24 H -0.313 1.313 25 H -0.260 1.260 26 C 0.123 3.877 27 C -0.126 4.126 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.159 0.841 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.219 0.781 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.030 0.970 47 H 0.261 0.739 48 H 0.030 0.970 49 H 0.053 0.947 50 H 0.070 0.930 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.038 31.382 -4.562 32.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.329 5.329 3 C 0.309 3.691 4 O -0.465 6.465 5 C 0.006 3.994 6 C -0.207 4.207 7 C -0.176 4.176 8 C -0.253 4.253 9 C -0.140 4.140 10 N -0.151 5.151 11 N -0.156 5.156 12 C -0.047 4.047 13 C -0.060 4.060 14 C 0.049 3.951 15 C -0.165 4.165 16 C 0.022 3.978 17 N -0.344 5.344 18 C -0.373 4.373 19 H 0.076 0.924 20 C -0.231 4.231 21 N -0.607 5.607 22 Si 0.777 3.223 23 H -0.205 1.205 24 H -0.242 1.242 25 H -0.184 1.184 26 C -0.003 4.003 27 C -0.166 4.166 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.176 0.824 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.140 0.860 41 H 0.236 0.764 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.070 0.930 48 H 0.048 0.952 49 H 0.071 0.929 50 H 0.088 0.912 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.031 31.058 -5.735 32.849 hybrid contribution 1.227 -0.904 1.314 2.012 sum -7.804 30.155 -4.421 31.460 Atomic orbital electron populations 1.22375 0.78358 1.04435 1.02527 1.47931 1.07828 1.04889 1.72217 1.21187 0.87332 0.86198 0.74382 1.90658 1.16239 1.87825 1.51746 1.18984 0.95277 0.91419 0.93712 1.22250 0.98326 1.05202 0.94940 1.21663 0.97806 0.96565 1.01578 1.19563 1.07304 1.00275 0.98136 1.23738 0.98170 1.00014 0.92099 1.77390 1.13101 1.00578 1.24038 1.48831 1.33592 1.18825 1.14377 1.22228 0.89730 0.95716 0.97056 1.22725 0.95702 1.00263 0.87310 1.20783 0.96748 0.82614 0.94950 1.22180 1.01100 0.96121 0.97051 1.21017 0.96932 0.92129 0.87672 1.44494 1.78784 1.09711 1.01379 1.18906 1.26812 0.86670 1.04873 0.92432 1.25834 1.00732 0.95801 1.00713 1.69920 1.42780 1.15831 1.32127 0.85959 0.81219 0.75734 0.79431 1.20469 1.24227 1.18406 1.21383 0.97147 0.92963 0.88765 1.22173 1.01053 0.95604 0.97745 0.91460 0.87775 0.91854 0.92729 0.88309 0.90339 0.94300 0.88903 0.92837 0.82425 0.89659 0.89633 0.85971 0.76448 0.90548 0.90762 0.91460 0.91870 0.95165 0.92967 0.95208 0.92898 0.91168 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.35 7.00 127.77 0.89 2.25 16 2 N -0.60 -15.86 2.13 -822.45 -1.75 -17.61 16 3 C 0.52 14.29 5.58 87.66 0.49 14.78 16 4 O -0.58 -21.09 15.32 -3.04 -0.05 -21.14 16 5 C 0.01 0.19 0.67 -53.68 -0.04 0.15 16 6 C -0.15 -1.87 7.79 71.98 0.56 -1.31 16 7 C -0.12 -2.09 7.71 71.98 0.55 -1.53 16 8 C -0.24 -4.16 2.92 -20.15 -0.06 -4.22 16 9 C 0.05 1.04 9.42 85.23 0.80 1.85 16 10 N -0.33 -7.56 12.58 -57.02 -0.72 -8.28 16 11 N -0.37 -5.32 4.01 -369.58 -1.48 -6.80 16 12 C 0.09 0.48 11.47 127.77 1.47 1.95 16 13 C 0.09 0.96 10.94 83.54 0.91 1.87 16 14 C 0.15 4.98 2.48 45.02 0.11 5.09 16 15 C -0.12 -4.08 5.30 30.67 0.16 -3.91 16 16 C 0.15 5.90 6.51 86.36 0.56 6.46 16 17 N -0.62 -29.77 2.82 -699.00 -1.97 -31.74 16 18 C -0.24 -13.97 10.09 84.03 0.85 -13.13 16 19 H 0.06 3.58 8.05 -2.91 -0.02 3.56 16 20 C -0.04 -2.18 5.32 84.86 0.45 -1.72 16 21 N -0.96 -61.17 13.97 21.65 0.30 -60.87 16 22 Si 0.95 48.04 24.29 68.60 1.67 49.71 16 23 H -0.28 -13.35 6.73 99.48 0.67 -12.68 16 24 H -0.31 -16.15 7.11 99.48 0.71 -15.44 16 25 H -0.26 -12.71 6.04 99.48 0.60 -12.11 16 26 C 0.12 5.40 4.14 86.35 0.36 5.76 16 27 C -0.13 -4.44 5.34 30.67 0.16 -4.28 16 28 H 0.07 1.25 7.57 -2.39 -0.02 1.23 16 29 H 0.10 1.84 3.31 -2.38 -0.01 1.83 16 30 H 0.06 1.44 6.47 -2.39 -0.02 1.43 16 31 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 32 H 0.10 0.57 8.08 -2.39 -0.02 0.55 16 33 H 0.08 0.95 4.55 -2.38 -0.01 0.94 16 34 H 0.04 0.86 8.09 -2.39 -0.02 0.84 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 1.04 8.10 -2.38 -0.02 1.02 16 37 H 0.16 4.19 6.87 -2.91 -0.02 4.17 16 38 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.22 0.31 8.06 -2.91 -0.02 0.29 16 42 H 0.08 2.85 6.91 -2.39 -0.02 2.83 16 43 H 0.07 2.18 7.82 -2.39 -0.02 2.16 16 44 H 0.07 2.21 6.75 -2.39 -0.02 2.19 16 45 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 46 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 48 H 0.03 1.32 6.79 -2.38 -0.02 1.31 16 49 H 0.05 2.54 4.14 -2.38 -0.01 2.53 16 50 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 51 H 0.07 2.41 7.72 -2.39 -0.02 2.39 16 Total: -1.00 -79.34 380.16 5.03 -74.32 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.78 Total: 12.34 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 8.24 Total: 10.07 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -5.62 Total: -125.30 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.05 Total: -21.14 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.67 Total: 49.71 kcal Total: -79.34 5.03 -74.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006237038.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.045 kcal (2) G-P(sol) polarization free energy of solvation -79.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds