Wall clock time and date at job start Tue Mar 31 2020 20:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34775 * 120.00322 * 2 1 4 4 O 1.21602 * 120.00254 * 174.71330 * 3 2 1 5 5 C 1.47435 * 120.00060 * 354.70790 * 3 2 1 6 6 C 1.38042 * 126.41329 * 55.69238 * 5 3 2 7 7 N 1.34256 * 107.41537 * 179.87261 * 6 5 3 8 8 H 0.97006 * 125.75237 * 180.11530 * 7 6 5 9 9 N 1.39930 * 108.49233 * 0.39955 * 7 6 5 10 10 C 1.30446 * 108.89715 * 359.75021 * 9 7 6 11 11 C 1.50696 * 125.98688 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47301 * 230.84142 * 11 10 9 13 13 C 1.53006 * 109.47262 * 350.84327 * 11 10 9 14 14 C 1.53001 * 109.47489 * 110.83867 * 11 10 9 15 15 C 1.46499 * 120.00032 * 179.97438 * 2 1 3 16 16 C 1.53040 * 109.45153 * 299.96720 * 15 2 1 17 17 C 1.53181 * 109.31694 * 181.37643 * 16 15 2 18 18 N 1.46928 * 108.77994 * 305.36581 * 17 16 15 19 19 C 1.36931 * 120.63327 * 233.63404 * 18 17 16 20 20 H 1.08009 * 120.00080 * 34.21953 * 19 18 17 21 21 C 1.38808 * 120.00108 * 214.22610 * 19 18 17 22 22 N 1.31623 * 120.00012 * 13.74006 * 21 19 18 23 23 Si 1.86803 * 120.00181 * 193.73908 * 21 19 18 24 24 H 1.48502 * 109.47059 * 59.99833 * 23 21 19 25 25 H 1.48498 * 109.47480 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47223 * 300.00051 * 23 21 19 27 27 C 1.46928 * 118.73739 * 53.60358 * 18 17 16 28 28 C 1.53042 * 109.46118 * 60.02391 * 15 2 1 29 29 H 1.08998 * 109.46891 * 272.12112 * 1 2 3 30 30 H 1.09000 * 109.47261 * 32.11919 * 1 2 3 31 31 H 1.08996 * 109.47128 * 152.11874 * 1 2 3 32 32 H 1.08007 * 126.28836 * 0.03022 * 6 5 3 33 33 H 1.08999 * 109.46957 * 64.29233 * 12 11 10 34 34 H 1.08999 * 109.47188 * 184.29178 * 12 11 10 35 35 H 1.08997 * 109.46817 * 304.29302 * 12 11 10 36 36 H 1.08998 * 109.47419 * 59.99803 * 13 11 10 37 37 H 1.08998 * 109.47120 * 180.02562 * 13 11 10 38 38 H 1.09003 * 109.46477 * 299.99637 * 13 11 10 39 39 H 1.09005 * 109.46833 * 68.27196 * 14 11 10 40 40 H 1.08998 * 109.47857 * 188.27309 * 14 11 10 41 41 H 1.09004 * 109.47441 * 308.27869 * 14 11 10 42 42 H 1.09002 * 109.46242 * 180.02562 * 15 2 1 43 43 H 1.09005 * 109.49436 * 301.33543 * 16 15 2 44 44 H 1.09003 * 109.49765 * 61.42288 * 16 15 2 45 45 H 1.09005 * 109.59021 * 185.57221 * 17 16 15 46 46 H 1.09007 * 109.70527 * 65.22304 * 17 16 15 47 47 H 0.97001 * 120.00176 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.58373 * 186.61239 * 27 18 17 49 49 H 1.08997 * 109.70054 * 66.25185 * 27 18 17 50 50 H 1.08993 * 109.49791 * 298.58789 * 28 15 2 51 51 H 1.09004 * 109.49193 * 58.67981 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3510 1.1694 0.0970 5 6 1.4065 2.4413 -0.1178 6 6 0.3850 2.8781 0.7016 7 7 -0.0019 4.0831 0.2538 8 1 -0.7036 4.6320 0.6378 9 7 0.7731 4.4110 -0.8641 10 6 1.6144 3.4411 -1.0942 11 6 2.6305 3.3952 -2.2061 12 6 2.5034 2.0693 -2.9589 13 6 2.3825 4.5558 -3.1718 14 6 4.0374 3.5142 -1.6167 15 6 2.1974 -1.2687 0.0006 16 6 1.8280 -2.0699 1.2511 17 6 2.6213 -3.3802 1.2660 18 7 2.3843 -4.0911 0.0021 19 6 1.9501 -5.3897 0.0028 20 1 1.2797 -5.7346 0.7763 21 6 2.3716 -6.2630 -0.9904 22 7 3.3832 -5.9375 -1.7670 23 14 1.5031 -7.9002 -1.2249 24 1 0.0722 -7.6606 -1.5414 25 1 2.1393 -8.6424 -2.3427 26 1 1.6071 -8.6988 0.0228 27 6 2.6214 -3.3817 -1.2625 28 6 1.8280 -2.0713 -1.2490 29 1 -0.3633 0.0380 1.0270 30 1 -0.3634 0.8704 -0.5464 31 1 -0.3633 -0.9083 -0.4806 32 1 -0.0255 2.3488 1.5489 33 1 1.5280 2.0182 -3.4427 34 1 3.2872 2.0033 -3.7135 35 1 2.6045 1.2418 -2.2567 36 1 2.4730 5.5004 -2.6356 37 1 3.1172 4.5224 -3.9763 38 1 1.3802 4.4710 -3.5918 39 1 4.2693 2.6151 -1.0457 40 1 4.7611 3.6289 -2.4237 41 1 4.0842 4.3834 -0.9605 42 1 3.2691 -1.0694 0.0009 43 1 2.0698 -1.4880 2.1405 44 1 0.7607 -2.2909 1.2394 45 1 2.2903 -3.9984 2.1006 46 1 3.6848 -3.1649 1.3702 47 1 3.6775 -6.5476 -2.4613 48 1 2.2903 -4.0008 -2.0963 49 1 3.6842 -3.1644 -1.3682 50 1 0.7608 -2.2922 -1.2372 51 1 2.0699 -1.4904 -2.1391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006277785.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:24 Heat of formation + Delta-G solvation = 31.154078 kcal Electronic energy + Delta-G solvation = -30670.014189 eV Core-core repulsion = 26798.463154 eV Total energy + Delta-G solvation = -3871.551035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.58521 -40.69240 -38.83742 -37.73117 -36.39952 -34.28902 -32.26640 -31.92466 -31.57481 -30.72967 -28.21840 -28.06567 -27.84949 -26.90789 -24.53569 -23.83706 -23.69317 -22.81083 -20.87818 -20.35541 -19.29440 -18.83098 -18.60482 -17.71072 -16.98703 -16.69919 -16.34672 -15.90110 -15.71669 -15.59038 -15.36550 -15.12972 -14.81795 -14.69890 -14.58998 -14.13930 -14.08050 -14.05112 -13.68746 -13.24674 -13.18381 -13.06838 -12.99188 -12.95428 -12.61158 -12.55889 -12.49595 -12.26009 -12.08983 -12.06426 -11.97587 -11.95224 -11.86290 -11.49780 -11.38803 -11.25733 -10.75749 -10.54813 -10.48513 -9.70735 -9.47362 -8.60179 -7.85900 -5.39027 0.72914 1.22958 1.49411 1.51151 1.58200 1.77489 1.96513 2.28129 2.52717 3.30691 3.38154 3.66974 3.70097 3.83569 4.03922 4.04477 4.08730 4.11546 4.31037 4.34519 4.41460 4.47796 4.50399 4.56440 4.69189 4.72515 4.73399 4.76887 4.79271 4.87999 4.89249 4.98661 4.99392 5.02781 5.07596 5.10639 5.11465 5.17393 5.20985 5.34517 5.36787 5.44777 5.47471 5.50645 5.67468 5.69041 5.73861 6.32870 6.43591 6.52549 6.62823 7.17067 7.31797 7.84943 8.41759 9.20588 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020151 B = 0.002947 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.177792 B = 9500.218718 C =10035.578747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.600 5.600 3 C 0.594 3.406 4 O -0.575 6.575 5 C -0.304 4.304 6 C 0.124 3.876 7 N -0.448 5.448 8 H 0.460 0.540 9 N -0.312 5.312 10 C 0.126 3.874 11 C 0.008 3.992 12 C -0.136 4.136 13 C -0.127 4.127 14 C -0.144 4.144 15 C 0.159 3.841 16 C -0.119 4.119 17 C 0.143 3.857 18 N -0.607 5.607 19 C -0.268 4.268 20 H 0.068 0.932 21 C -0.045 4.045 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.274 1.274 25 H -0.296 1.296 26 H -0.275 1.275 27 C 0.187 3.813 28 C -0.127 4.127 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.223 0.777 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.004 0.996 47 H 0.250 0.750 48 H 0.049 0.951 49 H -0.010 1.010 50 H 0.068 0.932 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.718 22.044 3.258 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.331 5.331 3 C 0.384 3.616 4 O -0.455 6.455 5 C -0.319 4.319 6 C -0.029 4.029 7 N -0.154 5.154 8 H 0.309 0.691 9 N -0.134 5.134 10 C -0.042 4.042 11 C 0.006 3.994 12 C -0.194 4.194 13 C -0.184 4.184 14 C -0.202 4.202 15 C 0.055 3.945 16 C -0.159 4.159 17 C 0.017 3.983 18 N -0.331 5.331 19 C -0.398 4.398 20 H 0.085 0.915 21 C -0.241 4.241 22 N -0.580 5.580 23 Si 0.796 3.204 24 H -0.200 1.200 25 H -0.223 1.223 26 H -0.200 1.200 27 C 0.061 3.939 28 C -0.166 4.166 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.240 0.760 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.022 0.978 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.008 0.992 50 H 0.086 0.914 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.469 23.111 2.823 25.529 hybrid contribution 0.094 -1.761 0.166 1.771 sum -10.376 21.350 2.989 23.926 Atomic orbital electron populations 1.21992 0.77916 1.03696 1.03239 1.47938 1.08117 1.04661 1.72416 1.17628 0.86122 0.83157 0.74718 1.90693 1.15686 1.87492 1.51652 1.20109 1.07122 0.99195 1.05457 1.23488 0.93247 0.87443 0.98773 1.46083 1.30801 1.15699 1.22839 0.69140 1.77051 1.09140 1.22938 1.04257 1.22344 0.95369 0.90289 0.96160 1.19085 0.91875 0.97240 0.91211 1.21866 1.02400 0.95262 0.99895 1.21731 1.02040 0.96417 0.98223 1.21987 0.94439 1.02586 1.01163 1.20739 0.96133 0.82172 0.95433 1.22136 1.01163 0.95868 0.96695 1.21010 0.95683 0.92604 0.88972 1.44240 1.78050 1.10126 1.00636 1.19434 1.21250 0.86917 1.12175 0.91482 1.26007 0.96781 1.01020 1.00320 1.70174 1.26873 1.38115 1.22840 0.85339 0.78269 0.79608 0.77164 1.19964 1.22280 1.20033 1.20399 0.94148 0.90270 0.89101 1.22279 1.01042 0.96532 0.96788 0.90127 0.90136 0.91051 0.76048 0.92087 0.90955 0.94194 0.92348 0.91013 0.92470 0.91804 0.91039 0.93292 0.91645 0.90956 0.90803 0.92018 0.97755 0.94093 0.93261 0.99186 0.91351 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 8.62 127.77 1.10 2.46 16 2 N -0.60 -16.23 2.76 -826.34 -2.28 -18.51 16 3 C 0.59 17.44 5.21 86.67 0.45 17.89 16 4 O -0.58 -21.57 13.47 -4.04 -0.05 -21.62 16 5 C -0.30 -7.03 4.65 -20.15 -0.09 -7.12 16 6 C 0.12 1.71 10.27 84.28 0.87 2.58 16 7 N -0.45 -5.77 7.29 -56.32 -0.41 -6.18 16 8 H 0.46 2.21 8.96 -213.42 -1.91 0.30 16 9 N -0.31 -6.55 11.94 -46.68 -0.56 -7.11 16 10 C 0.13 3.01 5.64 43.51 0.25 3.26 16 11 C 0.01 0.19 0.85 -52.93 -0.04 0.14 16 12 C -0.14 -3.39 8.31 71.98 0.60 -2.79 16 13 C -0.13 -2.44 7.98 71.98 0.57 -1.86 16 14 C -0.14 -3.66 8.45 71.98 0.61 -3.05 16 15 C 0.16 5.43 2.48 45.02 0.11 5.54 16 16 C -0.12 -3.88 5.34 30.67 0.16 -3.72 16 17 C 0.14 5.99 6.51 86.36 0.56 6.55 16 18 N -0.61 -30.45 2.96 -699.10 -2.07 -32.52 16 19 C -0.27 -14.54 9.53 84.03 0.80 -13.74 16 20 H 0.07 3.51 7.87 -2.91 -0.02 3.48 16 21 C -0.05 -2.51 4.95 84.86 0.42 -2.09 16 22 N -0.94 -55.83 11.47 21.65 0.25 -55.58 16 23 Si 0.97 44.30 29.58 68.60 2.03 46.33 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 27 C 0.19 9.16 5.25 86.36 0.45 9.61 16 28 C -0.13 -4.75 5.32 30.67 0.16 -4.59 16 29 H 0.08 1.04 8.12 -2.39 -0.02 1.02 16 30 H 0.08 1.28 6.28 -2.39 -0.01 1.26 16 31 H 0.07 1.44 6.46 -2.39 -0.02 1.43 16 32 H 0.22 1.21 7.95 -2.91 -0.02 1.18 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.04 1.20 5.45 -2.39 -0.01 1.18 16 36 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 2.02 5.27 -2.38 -0.01 2.01 16 40 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 41 H 0.05 1.21 8.12 -2.38 -0.02 1.19 16 42 H 0.07 2.68 6.91 -2.39 -0.02 2.66 16 43 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 44 H 0.07 2.24 7.72 -2.39 -0.02 2.22 16 45 H 0.06 2.47 7.93 -2.38 -0.02 2.45 16 46 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 47 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 48 H 0.05 2.69 6.44 -2.39 -0.02 2.67 16 49 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 50 H 0.07 2.43 6.72 -2.39 -0.02 2.41 16 51 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -74.00 390.04 2.90 -71.10 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.98 Total: 15.03 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.98 Total: 9.07 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -5.07 Total: -119.90 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.05 Total: -21.62 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -74.00 2.90 -71.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006277785.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.252 kcal (2) G-P(sol) polarization free energy of solvation -74.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds