Wall clock time and date at job start Tue Mar 31 2020 19:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47180 * 2 1 4 4 C 1.50700 * 109.47432 * 119.99940 * 2 1 3 5 5 N 1.30445 * 125.99042 * 300.14643 * 4 2 1 6 6 N 1.39930 * 108.89796 * 180.25853 * 5 4 2 7 7 C 1.46501 * 125.75384 * 179.73103 * 6 5 4 8 8 C 1.34256 * 108.48969 * 359.75221 * 6 5 4 9 9 C 1.38041 * 107.42031 * 0.02562 * 8 6 5 10 10 C 1.47427 * 126.41586 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00032 * 187.24017 * 10 9 8 12 12 N 1.34783 * 119.99724 * 7.23470 * 10 9 8 13 13 C 1.46493 * 120.00267 * 5.66036 * 12 10 9 14 14 C 1.46502 * 119.99742 * 185.66057 * 12 10 9 15 15 C 1.53035 * 109.46112 * 240.03114 * 14 12 10 16 16 C 1.53190 * 109.31589 * 178.60105 * 15 14 12 17 17 N 1.46928 * 108.76448 * 54.64942 * 16 15 14 18 18 C 1.36936 * 120.62758 * 126.40575 * 17 16 15 19 19 H 1.08000 * 120.00401 * 329.71529 * 18 17 16 20 20 C 1.38821 * 120.00034 * 149.71564 * 18 17 16 21 21 N 1.31619 * 119.99607 * 350.46087 * 20 18 17 22 22 Si 1.86801 * 120.00255 * 170.46343 * 20 18 17 23 23 H 1.48502 * 109.47015 * 59.99721 * 22 20 18 24 24 H 1.48492 * 109.46875 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46899 * 300.00064 * 22 20 18 26 26 C 1.46922 * 118.74297 * 306.38974 * 17 16 15 27 27 C 1.53037 * 109.46092 * 119.97173 * 14 12 10 28 28 H 1.08997 * 109.47292 * 59.99724 * 1 2 3 29 29 H 1.08997 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47189 * 300.00072 * 1 2 3 31 31 H 1.08997 * 109.47050 * 240.00409 * 2 1 3 32 32 H 1.08995 * 109.47333 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46723 * 300.00134 * 3 2 1 34 34 H 1.09001 * 109.47118 * 59.99884 * 3 2 1 35 35 H 1.09003 * 109.47013 * 270.02647 * 7 6 5 36 36 H 1.08998 * 109.47078 * 30.02731 * 7 6 5 37 37 H 1.09000 * 109.46839 * 150.02495 * 7 6 5 38 38 H 1.08005 * 126.28603 * 180.02562 * 8 6 5 39 39 H 1.09002 * 109.46901 * 275.40700 * 13 12 10 40 40 H 1.08996 * 109.47222 * 155.40250 * 13 12 10 41 41 H 1.09006 * 109.47206 * 35.40719 * 13 12 10 42 42 H 1.09002 * 109.46102 * 0.02562 * 14 12 10 43 43 H 1.09000 * 109.49383 * 298.56440 * 15 14 12 44 44 H 1.08996 * 109.50038 * 58.65735 * 15 14 12 45 45 H 1.09000 * 109.59868 * 294.86657 * 16 15 14 46 46 H 1.09001 * 109.70421 * 174.50166 * 16 15 14 47 47 H 0.97002 * 119.99805 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.58250 * 293.82109 * 26 17 16 49 49 H 1.08998 * 109.71024 * 173.46414 * 26 17 16 50 50 H 1.09000 * 109.49804 * 301.33927 * 27 14 12 51 51 H 1.09001 * 109.49963 * 61.43657 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7882 -0.3697 2.4657 6 7 2.4337 -1.2702 3.3203 7 6 2.4101 -1.2277 4.7845 8 6 3.0786 -2.1795 2.5721 9 6 2.8485 -1.8635 1.2482 10 6 3.3624 -2.5903 0.0729 11 8 3.1974 -2.1359 -1.0428 12 7 4.0152 -3.7582 0.2353 13 6 4.1065 -4.3678 1.5642 14 6 4.6336 -4.4181 -0.9174 15 6 4.0139 -5.8049 -1.1039 16 6 4.6378 -6.4778 -2.3305 17 7 6.0986 -6.4860 -2.1733 18 6 6.8053 -7.6540 -2.2803 19 1 6.3473 -8.5902 -1.9970 20 6 8.1104 -7.6349 -2.7529 21 7 8.6058 -6.5319 -3.2729 22 14 9.1635 -9.1744 -2.6508 23 1 8.5186 -10.2673 -3.4222 24 1 10.5069 -8.8936 -3.2177 25 1 9.3022 -9.5860 -1.2307 26 6 6.7869 -5.2171 -1.8995 27 6 6.1386 -4.5582 -0.6778 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.2410 -0.6205 5.1438 36 1 1.4694 -0.7914 5.1202 37 1 2.5024 -2.2397 5.1789 38 1 3.6690 -3.0063 2.9388 39 1 4.9480 -3.9351 2.1054 40 1 4.2546 -5.4428 1.4615 41 1 3.1848 -4.1791 2.1146 42 1 4.4629 -3.8203 -1.8127 43 1 4.2063 -6.4113 -0.2188 44 1 2.9385 -5.7061 -1.2510 45 1 4.3701 -5.9212 -3.2286 46 1 4.2734 -7.5018 -2.4130 47 1 9.5179 -6.5184 -3.6028 48 1 6.6944 -4.5577 -2.7624 49 1 7.8407 -5.4070 -1.6960 50 1 6.5755 -3.5719 -0.5217 51 1 6.3108 -5.1765 0.2032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006395176.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:58 Heat of formation + Delta-G solvation = 73.020977 kcal Electronic energy + Delta-G solvation = -30001.145542 eV Core-core repulsion = 26131.409992 eV Total energy + Delta-G solvation = -3869.735550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.69296 -39.45179 -37.28413 -35.97229 -34.98697 -32.88049 -32.40364 -30.83326 -29.92679 -29.22866 -27.41089 -27.15704 -26.91074 -25.11223 -23.16255 -22.35200 -22.12463 -21.47463 -19.90915 -19.04616 -18.78887 -17.01943 -16.70253 -16.28950 -15.94679 -15.62164 -14.98350 -14.83368 -14.72704 -14.63533 -13.92568 -13.73103 -13.59991 -13.49878 -13.32365 -13.06153 -12.94224 -12.87686 -12.64980 -12.47141 -12.32893 -12.17710 -11.91274 -11.46451 -11.33784 -11.21416 -11.10414 -10.96002 -10.82840 -10.73510 -10.67369 -10.31363 -10.18259 -10.04554 -9.73885 -9.61118 -9.49170 -9.35438 -8.77466 -8.51365 -8.22623 -6.62687 -5.76433 -3.24399 1.39434 2.11761 2.15740 3.26614 3.38293 3.43451 3.44129 3.55633 4.12254 4.39636 4.49086 4.60026 4.74946 4.87688 4.92512 5.00370 5.08032 5.17380 5.23127 5.30781 5.38142 5.42589 5.45916 5.52732 5.57443 5.61545 5.64727 5.70642 5.80511 5.86573 5.92515 5.98528 6.12260 6.21700 6.24043 6.30104 6.39338 6.48169 6.55324 6.62888 6.64526 6.67901 6.81241 6.97656 7.02384 7.40836 7.46014 7.68145 7.74990 7.80050 8.48031 8.49604 9.23705 9.85188 10.42968 11.31224 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.002661 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.685547 B =10518.608097 C =11155.462099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.032 4.032 3 C -0.138 4.138 4 C 0.141 3.859 5 N -0.301 5.301 6 N -0.367 5.367 7 C 0.098 3.902 8 C 0.077 3.923 9 C -0.281 4.281 10 C 0.590 3.410 11 O -0.543 6.543 12 N -0.605 5.605 13 C 0.064 3.936 14 C 0.148 3.852 15 C -0.138 4.138 16 C 0.148 3.852 17 N -0.593 5.593 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.906 5.906 22 Si 0.906 3.094 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.173 3.827 27 C -0.145 4.145 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.200 0.800 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.020 0.980 46 H 0.056 0.944 47 H 0.255 0.745 48 H 0.019 0.981 49 H 0.096 0.904 50 H 0.050 0.950 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.288 10.983 16.302 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.027 4.027 5 N -0.121 5.121 6 N -0.146 5.146 7 C -0.043 4.043 8 C -0.073 4.073 9 C -0.296 4.296 10 C 0.379 3.621 11 O -0.421 6.421 12 N -0.337 5.337 13 C -0.079 4.079 14 C 0.046 3.954 15 C -0.178 4.178 16 C 0.021 3.979 17 N -0.316 5.316 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.550 5.550 22 Si 0.735 3.265 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.047 3.953 27 C -0.185 4.185 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.216 0.784 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.038 0.962 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.037 0.963 49 H 0.114 0.886 50 H 0.068 0.932 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.786 12.059 16.589 24.712 hybrid contribution 1.142 -1.483 -0.050 1.872 sum -12.644 10.577 16.539 23.351 Atomic orbital electron populations 1.21775 0.94067 1.01874 1.01909 1.19980 0.95777 0.95780 0.93648 1.21759 1.01246 0.94706 1.01836 1.22379 0.94069 0.92905 0.93309 1.77098 1.20419 1.14425 1.00177 1.48376 1.37993 1.21225 1.06971 1.21945 1.04572 1.04010 0.73744 1.24236 0.96741 0.94968 0.91322 1.20329 1.13051 1.03472 0.92701 1.17293 0.77250 0.80049 0.87466 1.90682 1.58466 1.67597 1.25402 1.47923 1.54496 1.21991 1.09261 1.22218 1.00607 1.00222 0.84853 1.21192 0.92858 0.93356 0.88014 1.22368 0.98641 0.95669 1.01112 1.20873 0.85843 0.97955 0.93271 1.44058 1.00355 1.04919 1.82259 1.19146 0.95835 0.86472 1.36697 0.91809 1.25157 0.99184 0.97091 0.98142 1.69946 1.15657 1.26440 1.42992 0.86327 0.79620 0.82773 0.77730 1.20890 1.21616 1.21075 1.20822 0.97984 0.85488 0.91052 1.22584 0.93792 0.99893 1.02268 0.91976 0.92785 0.92552 0.86393 0.92648 0.91985 0.92599 0.90367 0.89030 0.89158 0.78365 0.92610 0.90062 0.91061 0.88545 0.92233 0.92908 0.96161 0.92556 0.93512 0.96264 0.88639 0.93175 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.18 37.16 0.34 -1.16 16 2 C -0.03 -0.41 3.26 -91.77 -0.30 -0.70 16 3 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 4 C 0.14 1.95 5.77 -82.02 -0.47 1.47 16 5 N -0.30 -3.85 12.50 33.89 0.42 -3.43 16 6 N -0.37 -3.67 3.98 -67.60 -0.27 -3.94 16 7 C 0.10 0.49 11.44 59.85 0.68 1.17 16 8 C 0.08 0.80 9.39 -16.56 -0.16 0.64 16 9 C -0.28 -3.89 5.96 -105.07 -0.63 -4.51 16 10 C 0.59 9.64 7.66 -12.52 -0.10 9.55 16 11 O -0.54 -10.53 13.94 5.28 0.07 -10.45 16 12 N -0.61 -9.11 2.76 -175.16 -0.48 -9.60 16 13 C 0.06 0.69 7.72 59.84 0.46 1.15 16 14 C 0.15 2.64 2.47 -67.89 -0.17 2.47 16 15 C -0.14 -2.42 5.32 -26.62 -0.14 -2.56 16 16 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 17 N -0.59 -14.75 2.99 -172.32 -0.52 -15.26 16 18 C -0.25 -6.81 9.60 -15.06 -0.14 -6.96 16 19 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 20 C 0.00 0.07 5.09 -17.43 -0.09 -0.02 16 21 N -0.91 -26.12 10.90 55.49 0.60 -25.52 16 22 Si 0.91 21.45 29.56 -169.99 -5.03 16.43 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.17 4.13 5.26 -3.71 -0.02 4.12 16 27 C -0.15 -2.79 5.34 -26.61 -0.14 -2.93 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.12 1.77 5.64 -51.93 -0.29 1.48 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.20 1.39 4.43 -52.48 -0.23 1.16 16 39 H 0.06 0.51 7.40 -51.93 -0.38 0.13 16 40 H 0.08 0.89 6.47 -51.93 -0.34 0.56 16 41 H 0.07 0.61 5.26 -51.93 -0.27 0.34 16 42 H 0.10 1.97 6.91 -51.93 -0.36 1.61 16 43 H 0.06 1.01 6.72 -51.93 -0.35 0.66 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.10 2.55 5.98 -51.93 -0.31 2.23 16 50 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 51 H 0.06 1.04 7.72 -51.93 -0.40 0.64 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -33.61 393.57 -8.20 -41.82 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.39 Total: 0.41 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.55 Total: 3.61 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.24 Total: -57.74 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.61 -8.20 -41.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006395176.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.838 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds