Wall clock time and date at job start Tue Mar 31 2020 19:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47180 * 2 1 4 4 C 1.50700 * 109.47432 * 119.99940 * 2 1 3 5 5 N 1.30445 * 125.99042 * 300.14643 * 4 2 1 6 6 N 1.39930 * 108.89796 * 180.25853 * 5 4 2 7 7 C 1.46501 * 125.75384 * 179.73103 * 6 5 4 8 8 C 1.34256 * 108.48969 * 359.75221 * 6 5 4 9 9 C 1.38041 * 107.42031 * 0.02562 * 8 6 5 10 10 C 1.47427 * 126.41586 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00032 * 187.24017 * 10 9 8 12 12 N 1.34783 * 119.99724 * 7.23470 * 10 9 8 13 13 C 1.46493 * 120.00267 * 5.66036 * 12 10 9 14 14 C 1.46502 * 119.99742 * 185.66057 * 12 10 9 15 15 C 1.53035 * 109.46112 * 240.03114 * 14 12 10 16 16 C 1.53190 * 109.31589 * 178.60105 * 15 14 12 17 17 N 1.46928 * 108.76448 * 54.64942 * 16 15 14 18 18 C 1.36936 * 120.62758 * 126.40575 * 17 16 15 19 19 H 1.08000 * 120.00401 * 329.71529 * 18 17 16 20 20 C 1.38821 * 120.00034 * 149.71564 * 18 17 16 21 21 N 1.31619 * 119.99607 * 350.46087 * 20 18 17 22 22 Si 1.86801 * 120.00255 * 170.46343 * 20 18 17 23 23 H 1.48502 * 109.47015 * 59.99721 * 22 20 18 24 24 H 1.48492 * 109.46875 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46899 * 300.00064 * 22 20 18 26 26 C 1.46922 * 118.74297 * 306.38974 * 17 16 15 27 27 C 1.53037 * 109.46092 * 119.97173 * 14 12 10 28 28 H 1.08997 * 109.47292 * 59.99724 * 1 2 3 29 29 H 1.08997 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47189 * 300.00072 * 1 2 3 31 31 H 1.08997 * 109.47050 * 240.00409 * 2 1 3 32 32 H 1.08995 * 109.47333 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46723 * 300.00134 * 3 2 1 34 34 H 1.09001 * 109.47118 * 59.99884 * 3 2 1 35 35 H 1.09003 * 109.47013 * 270.02647 * 7 6 5 36 36 H 1.08998 * 109.47078 * 30.02731 * 7 6 5 37 37 H 1.09000 * 109.46839 * 150.02495 * 7 6 5 38 38 H 1.08005 * 126.28603 * 180.02562 * 8 6 5 39 39 H 1.09002 * 109.46901 * 275.40700 * 13 12 10 40 40 H 1.08996 * 109.47222 * 155.40250 * 13 12 10 41 41 H 1.09006 * 109.47206 * 35.40719 * 13 12 10 42 42 H 1.09002 * 109.46102 * 0.02562 * 14 12 10 43 43 H 1.09000 * 109.49383 * 298.56440 * 15 14 12 44 44 H 1.08996 * 109.50038 * 58.65735 * 15 14 12 45 45 H 1.09000 * 109.59868 * 294.86657 * 16 15 14 46 46 H 1.09001 * 109.70421 * 174.50166 * 16 15 14 47 47 H 0.97002 * 119.99805 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.58250 * 293.82109 * 26 17 16 49 49 H 1.08998 * 109.71024 * 173.46414 * 26 17 16 50 50 H 1.09000 * 109.49804 * 301.33927 * 27 14 12 51 51 H 1.09001 * 109.49963 * 61.43657 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7882 -0.3697 2.4657 6 7 2.4337 -1.2702 3.3203 7 6 2.4101 -1.2277 4.7845 8 6 3.0786 -2.1795 2.5721 9 6 2.8485 -1.8635 1.2482 10 6 3.3624 -2.5903 0.0729 11 8 3.1974 -2.1359 -1.0428 12 7 4.0152 -3.7582 0.2353 13 6 4.1065 -4.3678 1.5642 14 6 4.6336 -4.4181 -0.9174 15 6 4.0139 -5.8049 -1.1039 16 6 4.6378 -6.4778 -2.3305 17 7 6.0986 -6.4860 -2.1733 18 6 6.8053 -7.6540 -2.2803 19 1 6.3473 -8.5902 -1.9970 20 6 8.1104 -7.6349 -2.7529 21 7 8.6058 -6.5319 -3.2729 22 14 9.1635 -9.1744 -2.6508 23 1 8.5186 -10.2673 -3.4222 24 1 10.5069 -8.8936 -3.2177 25 1 9.3022 -9.5860 -1.2307 26 6 6.7869 -5.2171 -1.8995 27 6 6.1386 -4.5582 -0.6778 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.2410 -0.6205 5.1438 36 1 1.4694 -0.7914 5.1202 37 1 2.5024 -2.2397 5.1789 38 1 3.6690 -3.0063 2.9388 39 1 4.9480 -3.9351 2.1054 40 1 4.2546 -5.4428 1.4615 41 1 3.1848 -4.1791 2.1146 42 1 4.4629 -3.8203 -1.8127 43 1 4.2063 -6.4113 -0.2188 44 1 2.9385 -5.7061 -1.2510 45 1 4.3701 -5.9212 -3.2286 46 1 4.2734 -7.5018 -2.4130 47 1 9.5179 -6.5184 -3.6028 48 1 6.6944 -4.5577 -2.7624 49 1 7.8407 -5.4070 -1.6960 50 1 6.5755 -3.5719 -0.5217 51 1 6.3108 -5.1765 0.2032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006395176.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:57 Heat of formation + Delta-G solvation = 52.366926 kcal Electronic energy + Delta-G solvation = -30002.041169 eV Core-core repulsion = 26131.409992 eV Total energy + Delta-G solvation = -3870.631177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.59479 -40.71453 -38.84120 -37.01645 -36.29348 -34.43154 -33.34639 -32.30270 -31.54951 -30.65094 -28.28542 -28.04206 -27.78601 -26.85614 -24.50713 -23.82948 -23.29652 -22.74068 -21.07820 -20.55298 -19.82299 -18.72616 -17.83990 -17.47001 -16.99688 -16.76811 -16.57268 -15.93229 -15.74959 -15.61835 -15.46003 -15.32492 -14.85258 -14.69043 -14.40346 -14.29969 -14.15753 -14.02829 -13.84947 -13.48883 -13.31798 -13.19082 -12.99772 -12.91326 -12.80737 -12.59346 -12.52476 -12.22657 -12.11671 -12.09745 -11.97713 -11.94803 -11.84383 -11.63699 -11.44908 -11.28020 -10.63620 -10.54340 -10.33061 -9.75181 -9.44584 -8.65208 -7.83731 -5.35550 0.53596 1.10762 1.47222 1.50041 1.51882 1.58851 2.10255 2.43070 2.53098 3.32486 3.33260 3.62288 3.67730 3.79841 3.96273 4.06796 4.10021 4.17790 4.24107 4.25184 4.38198 4.39405 4.46325 4.49879 4.57832 4.60388 4.64159 4.67621 4.73630 4.74996 4.77417 4.89904 4.90918 4.92750 4.95131 5.07424 5.09715 5.11166 5.18033 5.30259 5.31830 5.32480 5.50421 5.57282 5.65702 5.67874 5.76137 5.93469 6.42913 6.47716 6.63897 7.17058 7.29443 7.85759 8.39646 9.22118 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.002661 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.685547 B =10518.608097 C =11155.462099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.037 4.037 3 C -0.130 4.130 4 C 0.126 3.874 5 N -0.318 5.318 6 N -0.359 5.359 7 C 0.086 3.914 8 C 0.103 3.897 9 C -0.317 4.317 10 C 0.585 3.415 11 O -0.588 6.588 12 N -0.603 5.603 13 C 0.054 3.946 14 C 0.158 3.842 15 C -0.121 4.121 16 C 0.144 3.856 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.072 0.928 20 C -0.052 4.052 21 N -0.940 5.940 22 Si 0.973 3.027 23 H -0.277 1.277 24 H -0.297 1.297 25 H -0.273 1.273 26 C 0.181 3.819 27 C -0.126 4.126 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.237 0.763 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.005 0.995 46 H 0.064 0.936 47 H 0.250 0.750 48 H -0.015 1.015 49 H 0.066 0.934 50 H 0.054 0.946 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.211 10.076 20.020 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.057 4.057 3 C -0.188 4.188 4 C -0.041 4.041 5 N -0.140 5.140 6 N -0.137 5.137 7 C -0.053 4.053 8 C -0.049 4.049 9 C -0.332 4.332 10 C 0.376 3.624 11 O -0.470 6.470 12 N -0.334 5.334 13 C -0.088 4.088 14 C 0.055 3.945 15 C -0.160 4.160 16 C 0.018 3.982 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.089 0.911 20 C -0.247 4.247 21 N -0.586 5.586 22 Si 0.801 3.199 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.199 1.199 26 C 0.054 3.946 27 C -0.166 4.166 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.144 0.856 38 H 0.253 0.747 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.023 0.977 46 H 0.082 0.918 47 H 0.059 0.941 48 H 0.003 0.997 49 H 0.084 0.916 50 H 0.072 0.928 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.752 11.154 20.376 27.517 hybrid contribution 1.387 -1.171 -1.148 2.148 sum -13.365 9.983 19.228 25.456 Atomic orbital electron populations 1.21703 0.92732 1.01543 1.02788 1.19943 0.96924 0.96168 0.92700 1.21696 1.00247 0.94088 1.02765 1.22483 0.94515 0.93278 0.93837 1.77041 1.21311 1.15569 1.00039 1.48821 1.36341 1.19953 1.08548 1.22434 1.05505 1.06735 0.70653 1.24652 0.95345 0.95009 0.89893 1.20208 1.15255 1.04434 0.93277 1.17714 0.76818 0.80106 0.87741 1.90661 1.60240 1.68729 1.27356 1.47823 1.53850 1.21700 1.10039 1.22581 1.03064 1.00298 0.82836 1.20762 0.92141 0.93285 0.88360 1.22155 0.99002 0.95069 0.99801 1.21001 0.84071 0.98669 0.94505 1.44300 1.01792 1.04525 1.82608 1.19532 0.96218 0.87430 1.35937 0.91061 1.25959 1.00559 0.99945 0.98275 1.70145 1.15589 1.28530 1.44366 0.85263 0.77350 0.79241 0.78080 1.20246 1.22330 1.19858 1.20561 0.96967 0.85187 0.91864 1.22291 0.94419 0.99707 1.00148 0.90627 0.93678 0.92034 0.89224 0.94077 0.90600 0.92019 0.88929 0.88568 0.85613 0.74706 0.90200 0.89700 0.88333 0.91957 0.90502 0.91387 0.97742 0.91795 0.94127 0.99681 0.91576 0.92759 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.18 71.98 0.66 -2.15 16 2 C -0.04 -0.97 3.26 -11.54 -0.04 -1.01 16 3 C -0.13 -2.95 9.18 71.98 0.66 -2.29 16 4 C 0.13 3.41 5.77 43.51 0.25 3.67 16 5 N -0.32 -7.62 12.50 -46.68 -0.58 -8.20 16 6 N -0.36 -5.96 3.98 -367.78 -1.46 -7.42 16 7 C 0.09 0.48 11.44 127.77 1.46 1.94 16 8 C 0.10 1.75 9.39 84.28 0.79 2.54 16 9 C -0.32 -8.38 5.96 -20.15 -0.12 -8.50 16 10 C 0.58 19.05 7.66 86.66 0.66 19.71 16 11 O -0.59 -23.96 13.94 -4.02 -0.06 -24.01 16 12 N -0.60 -17.27 2.76 -826.34 -2.28 -19.55 16 13 C 0.05 0.93 7.72 127.77 0.99 1.92 16 14 C 0.16 5.63 2.47 45.02 0.11 5.74 16 15 C -0.12 -4.08 5.32 30.67 0.16 -3.92 16 16 C 0.14 6.08 6.52 86.36 0.56 6.64 16 17 N -0.61 -30.73 2.99 -699.09 -2.09 -32.82 16 18 C -0.26 -14.17 9.60 84.04 0.81 -13.36 16 19 H 0.07 3.69 7.85 -2.91 -0.02 3.67 16 20 C -0.05 -2.91 5.09 84.86 0.43 -2.48 16 21 N -0.94 -55.97 10.90 21.65 0.24 -55.74 16 22 Si 0.97 44.28 29.56 68.60 2.03 46.30 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 C 0.18 8.96 5.26 86.36 0.45 9.42 16 27 C -0.13 -4.80 5.34 30.67 0.16 -4.64 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 2.88 5.64 -2.39 -0.01 2.87 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.24 1.99 4.43 -2.91 -0.01 1.98 16 39 H 0.08 1.06 7.40 -2.39 -0.02 1.04 16 40 H 0.08 1.48 6.47 -2.39 -0.02 1.47 16 41 H 0.10 1.20 5.26 -2.38 -0.01 1.18 16 42 H 0.06 2.67 6.91 -2.39 -0.02 2.66 16 43 H 0.08 2.38 6.72 -2.39 -0.02 2.36 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 47 H 0.25 14.45 8.31 -92.71 -0.77 13.67 16 48 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 49 H 0.07 3.67 5.98 -2.39 -0.01 3.65 16 50 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 51 H 0.07 2.51 7.72 -2.39 -0.02 2.49 16 Total: -1.00 -77.58 393.57 4.72 -72.86 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.92 Total: 15.36 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 8.01 Total: 13.23 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -6.19 Total: -123.74 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.06 Total: -24.01 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -77.58 4.72 -72.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006395176.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.228 kcal (2) G-P(sol) polarization free energy of solvation -77.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds