Wall clock time and date at job start Tue Mar 31 2020 18:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 N 1.30831 * 125.90151 * 269.69358 * 3 2 1 5 5 N 1.40084 * 108.20682 * 179.85507 * 4 3 2 6 6 C 1.46498 * 126.03635 * 180.17133 * 5 4 3 7 7 C 1.34944 * 107.92270 * 0.41075 * 5 4 3 8 8 C 1.50707 * 126.12522 * 179.79252 * 7 5 4 9 9 C 1.52996 * 109.47141 * 89.96033 * 8 7 5 10 10 C 1.35315 * 107.74852 * 359.75876 * 7 5 4 11 11 C 1.50701 * 126.04080 * 180.02562 * 10 7 5 12 12 C 1.50697 * 109.46943 * 270.00130 * 11 10 7 13 13 O 1.21288 * 120.00395 * 359.97438 * 12 11 10 14 14 N 1.34783 * 120.00038 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00191 * 179.97438 * 14 12 11 16 16 H 1.09005 * 112.84750 * 25.33806 * 15 14 12 17 17 C 1.53775 * 113.61715 * 156.52747 * 15 14 12 18 18 C 1.53777 * 87.08414 * 139.98252 * 17 15 14 19 19 H 1.08996 * 113.61073 * 89.11540 * 18 17 15 20 20 N 1.46496 * 113.61932 * 219.93940 * 18 17 15 21 21 C 1.36933 * 120.00133 * 205.00206 * 20 18 17 22 22 H 1.07999 * 120.00255 * 359.97438 * 21 20 18 23 23 C 1.38815 * 120.00026 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99878 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00086 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47104 * 59.99744 * 25 23 21 27 27 H 1.48499 * 109.47383 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47267 * 299.99737 * 25 23 21 29 29 C 1.53772 * 113.61749 * 254.14021 * 15 14 12 30 30 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 32 32 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 34 34 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 35 35 H 1.09002 * 109.47229 * 270.28261 * 6 5 4 36 36 H 1.08997 * 109.47658 * 30.28660 * 6 5 4 37 37 H 1.09004 * 109.47162 * 150.28856 * 6 5 4 38 38 H 1.09002 * 109.46985 * 209.95747 * 8 7 5 39 39 H 1.09006 * 109.46911 * 329.96128 * 8 7 5 40 40 H 1.09000 * 109.46974 * 180.02562 * 9 8 7 41 41 H 1.09003 * 109.47114 * 300.00263 * 9 8 7 42 42 H 1.08999 * 109.47245 * 59.99549 * 9 8 7 43 43 H 1.09005 * 109.47070 * 29.99901 * 11 10 7 44 44 H 1.09000 * 109.47152 * 149.99949 * 11 10 7 45 45 H 0.96997 * 119.99843 * 359.97438 * 14 12 11 46 46 H 1.08996 * 113.61822 * 254.53924 * 17 15 14 47 47 H 1.09010 * 113.61275 * 25.35151 * 17 15 14 48 48 H 0.97002 * 119.99634 * 24.99626 * 20 18 17 49 49 H 0.96999 * 120.00101 * 180.02562 * 24 23 21 50 50 H 1.09007 * 113.61542 * 334.56850 * 29 15 14 51 51 H 1.09002 * 113.61627 * 105.46921 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2934 2.1422 -1.0598 5 7 2.7330 3.4023 -0.6340 6 6 3.1267 4.5159 -1.5007 7 6 2.7347 3.4074 0.7154 8 6 3.1410 4.5587 1.5990 9 6 1.9184 5.4289 1.8972 10 6 2.3057 2.1940 1.1331 11 6 2.1494 1.7536 2.5658 12 6 3.4369 1.1335 3.0440 13 8 4.3878 1.0562 2.2950 14 7 3.5319 0.6646 4.3041 15 6 4.7834 0.0613 4.7688 16 1 5.6553 0.4210 4.2223 17 6 4.9554 0.0988 6.2964 18 6 5.5364 -1.3208 6.1872 19 1 6.6145 -1.3402 6.0284 20 7 5.1034 -2.2165 7.2625 21 6 5.8776 -3.2905 7.6124 22 1 6.8071 -3.4774 7.0953 23 6 5.4670 -4.1395 8.6310 24 7 4.3339 -3.9120 9.2608 25 14 6.5227 -5.6050 9.1078 26 1 7.8574 -5.1296 9.5529 27 1 5.8679 -6.3476 10.2145 28 1 6.6825 -6.5023 7.9354 29 6 4.7211 -1.4704 4.8897 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3635 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.1932 4.4496 -1.7156 36 1 2.5644 4.4671 -2.4331 37 1 2.9154 5.4598 -0.9980 38 1 3.5491 4.1732 2.5334 39 1 3.8977 5.1570 1.0913 40 1 2.2124 6.2618 2.5359 41 1 1.5102 5.8143 0.9629 42 1 1.1617 4.8306 2.4048 43 1 1.9091 2.6165 3.1870 44 1 1.3454 1.0208 2.6351 45 1 2.7717 0.7268 4.9032 46 1 5.6775 0.8412 6.6364 47 1 4.0123 0.1454 6.8410 48 1 4.2684 -2.0487 7.7267 49 1 4.0472 -4.5050 9.9728 50 1 3.7138 -1.8553 5.0490 51 1 5.2544 -1.9932 4.0957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022213979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:16 Heat of formation + Delta-G solvation = 51.565596 kcal Electronic energy + Delta-G solvation = -28835.829241 eV Core-core repulsion = 24965.163315 eV Total energy + Delta-G solvation = -3870.665925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.63259 -39.63991 -37.84080 -35.33773 -34.18002 -33.99617 -32.68218 -32.13798 -30.85736 -29.79190 -28.08004 -26.10366 -25.09166 -24.45243 -23.87792 -23.49601 -22.13982 -20.43336 -19.69283 -19.43521 -19.07282 -17.19793 -16.86874 -16.68076 -16.02842 -15.70977 -15.30983 -14.82576 -14.66312 -14.45296 -14.39932 -14.20267 -13.83614 -13.70486 -13.28871 -13.24882 -13.02015 -12.87454 -12.76605 -12.70223 -12.31781 -12.08472 -11.92495 -11.88300 -11.79213 -11.59148 -11.33435 -11.24186 -11.22313 -10.89341 -10.58763 -10.50669 -10.45036 -10.28410 -10.05488 -9.69547 -9.53355 -9.16306 -8.89069 -8.66024 -8.35310 -6.97406 -5.79436 -3.08057 1.73774 2.34536 2.58205 2.83129 3.43865 3.48117 3.48919 3.54235 4.24748 4.27369 4.57825 4.59225 4.74490 4.82779 4.87211 4.90153 4.94633 5.01527 5.06052 5.09414 5.19051 5.20642 5.26793 5.28593 5.37844 5.39057 5.42125 5.47903 5.49693 5.56835 5.66622 5.78011 5.79067 5.89197 5.98516 5.99531 6.05266 6.12945 6.16410 6.27462 6.34214 6.57646 6.59698 6.65330 6.80964 6.90350 7.10674 7.66379 7.69222 7.75514 8.39196 8.45848 9.50482 10.07428 10.42077 11.42913 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.002147 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.135467 B =13036.446108 C =13670.859586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C 0.098 3.902 4 N -0.299 5.299 5 N -0.375 5.375 6 C 0.103 3.897 7 C 0.102 3.898 8 C -0.063 4.063 9 C -0.146 4.146 10 C -0.211 4.211 11 C -0.063 4.063 12 C 0.509 3.491 13 O -0.536 6.536 14 N -0.718 5.718 15 C 0.119 3.881 16 H 0.106 0.894 17 C -0.158 4.158 18 C 0.168 3.832 19 H 0.078 0.922 20 N -0.710 5.710 21 C -0.244 4.244 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.908 3.092 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 C -0.176 4.176 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.398 0.602 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.079 0.921 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.695 20.535 -17.982 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.069 4.069 4 N -0.120 5.120 5 N -0.156 5.156 6 C -0.038 4.038 7 C -0.026 4.026 8 C -0.102 4.102 9 C -0.204 4.204 10 C -0.222 4.222 11 C -0.104 4.104 12 C 0.295 3.705 13 O -0.412 6.412 14 N -0.369 5.369 15 C 0.014 3.986 16 H 0.124 0.876 17 C -0.198 4.198 18 C 0.056 3.944 19 H 0.096 0.904 20 N -0.348 5.348 21 C -0.375 4.375 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.218 4.218 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.232 0.768 46 H 0.083 0.917 47 H 0.100 0.900 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.098 0.902 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.791 20.495 -19.861 29.583 hybrid contribution -0.030 -0.724 1.483 1.650 sum -7.821 19.771 -18.378 28.103 Atomic orbital electron populations 1.21701 0.94254 1.02018 1.02134 1.19957 0.95906 0.88994 1.03647 1.22061 0.98079 0.96596 0.90149 1.77279 1.21783 0.90493 1.22465 1.48159 1.52281 1.11210 1.03988 1.21784 1.01312 0.85921 0.94825 1.20684 1.00284 0.97138 0.84446 1.20219 0.98457 0.92998 0.98567 1.21744 0.97441 0.99449 1.01765 1.18944 1.14799 0.93926 0.94547 1.19939 0.96281 1.01543 0.92609 1.20710 0.89962 0.78076 0.81760 1.90692 1.39533 1.56473 1.54535 1.46091 1.15991 1.61497 1.13294 1.22426 0.86923 0.94328 0.94897 0.87637 1.23844 1.01847 1.00190 0.93915 1.21380 0.96488 0.88301 0.88269 0.90373 1.42339 1.25307 1.28591 1.38545 1.19271 1.02183 1.02226 1.13819 0.91074 1.24762 0.97566 0.99597 0.98973 1.69646 1.22169 1.39809 1.26523 0.86254 0.79507 0.82575 0.77775 1.21217 1.21696 1.21205 1.24343 1.02349 0.93941 1.01187 0.92439 0.92635 0.91880 0.90439 0.89947 0.90938 0.89418 0.89755 0.89207 0.90697 0.91629 0.92843 0.91894 0.88750 0.88313 0.76776 0.91651 0.89984 0.78101 0.93421 0.90240 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.05 -0.50 6.17 -27.88 -0.17 -0.67 16 3 C 0.10 1.27 6.47 -82.41 -0.53 0.74 16 4 N -0.30 -4.13 12.57 33.67 0.42 -3.71 16 5 N -0.38 -4.28 4.01 -63.88 -0.26 -4.54 16 6 C 0.10 0.71 11.10 59.85 0.66 1.37 16 7 C 0.10 1.12 6.19 -82.26 -0.51 0.61 16 8 C -0.06 -0.50 5.56 -27.88 -0.15 -0.65 16 9 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 10 C -0.21 -2.54 4.59 -105.05 -0.48 -3.02 16 11 C -0.06 -0.63 5.46 -29.04 -0.16 -0.79 16 12 C 0.51 6.81 7.82 -10.98 -0.09 6.72 16 13 O -0.54 -9.52 15.65 5.55 0.09 -9.43 16 14 N -0.72 -8.95 5.36 -53.02 -0.28 -9.23 16 15 C 0.12 1.78 4.21 -67.13 -0.28 1.50 16 16 H 0.11 1.69 7.50 -51.93 -0.39 1.30 16 17 C -0.16 -2.45 7.58 -25.92 -0.20 -2.65 16 18 C 0.17 3.28 4.48 -67.03 -0.30 2.98 16 19 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 20 N -0.71 -17.46 5.41 -52.55 -0.28 -17.74 16 21 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 25 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 C -0.18 -3.10 7.70 -25.83 -0.20 -3.30 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.37 7.66 -51.93 -0.40 -0.03 16 38 H 0.09 0.76 7.77 -51.93 -0.40 0.35 16 39 H 0.07 0.50 7.72 -51.93 -0.40 0.10 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.71 7.77 -51.93 -0.40 0.31 16 44 H 0.10 0.83 7.92 -51.93 -0.41 0.42 16 45 H 0.40 3.95 8.71 -40.82 -0.36 3.60 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.08 1.24 8.09 -51.92 -0.42 0.82 16 48 H 0.38 9.94 7.93 -40.82 -0.32 9.61 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 51 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 420.46 15.07 6.34 6.34 Total: -1.00 -35.32 420.46 -9.15 -44.48 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.96 Total: 9.50 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.92 Total: -5.84 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 0.32 Total: -62.30 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -35.32 -9.15 -44.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022213979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.044 kcal (2) G-P(sol) polarization free energy of solvation -35.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds