Wall clock time and date at job start Tue Mar 31 2020 18:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 N 1.30831 * 125.90151 * 269.69358 * 3 2 1 5 5 N 1.40084 * 108.20682 * 179.85507 * 4 3 2 6 6 C 1.46498 * 126.03635 * 180.17133 * 5 4 3 7 7 C 1.34944 * 107.92270 * 0.41075 * 5 4 3 8 8 C 1.50707 * 126.12522 * 179.79252 * 7 5 4 9 9 C 1.52996 * 109.47141 * 89.96033 * 8 7 5 10 10 C 1.35315 * 107.74852 * 359.75876 * 7 5 4 11 11 C 1.50701 * 126.04080 * 180.02562 * 10 7 5 12 12 C 1.50697 * 109.46943 * 270.00130 * 11 10 7 13 13 O 1.21288 * 120.00395 * 359.97438 * 12 11 10 14 14 N 1.34783 * 120.00038 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00191 * 179.97438 * 14 12 11 16 16 H 1.09005 * 112.84750 * 25.33806 * 15 14 12 17 17 C 1.53775 * 113.61715 * 156.52747 * 15 14 12 18 18 C 1.53777 * 87.08414 * 139.98252 * 17 15 14 19 19 H 1.08996 * 113.61073 * 89.11540 * 18 17 15 20 20 N 1.46496 * 113.61932 * 219.93940 * 18 17 15 21 21 C 1.36933 * 120.00133 * 205.00206 * 20 18 17 22 22 H 1.07999 * 120.00255 * 359.97438 * 21 20 18 23 23 C 1.38815 * 120.00026 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99878 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00086 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47104 * 59.99744 * 25 23 21 27 27 H 1.48499 * 109.47383 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47267 * 299.99737 * 25 23 21 29 29 C 1.53772 * 113.61749 * 254.14021 * 15 14 12 30 30 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 32 32 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 34 34 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 35 35 H 1.09002 * 109.47229 * 270.28261 * 6 5 4 36 36 H 1.08997 * 109.47658 * 30.28660 * 6 5 4 37 37 H 1.09004 * 109.47162 * 150.28856 * 6 5 4 38 38 H 1.09002 * 109.46985 * 209.95747 * 8 7 5 39 39 H 1.09006 * 109.46911 * 329.96128 * 8 7 5 40 40 H 1.09000 * 109.46974 * 180.02562 * 9 8 7 41 41 H 1.09003 * 109.47114 * 300.00263 * 9 8 7 42 42 H 1.08999 * 109.47245 * 59.99549 * 9 8 7 43 43 H 1.09005 * 109.47070 * 29.99901 * 11 10 7 44 44 H 1.09000 * 109.47152 * 149.99949 * 11 10 7 45 45 H 0.96997 * 119.99843 * 359.97438 * 14 12 11 46 46 H 1.08996 * 113.61822 * 254.53924 * 17 15 14 47 47 H 1.09010 * 113.61275 * 25.35151 * 17 15 14 48 48 H 0.97002 * 119.99634 * 24.99626 * 20 18 17 49 49 H 0.96999 * 120.00101 * 180.02562 * 24 23 21 50 50 H 1.09007 * 113.61542 * 334.56850 * 29 15 14 51 51 H 1.09002 * 113.61627 * 105.46921 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2934 2.1422 -1.0598 5 7 2.7330 3.4023 -0.6340 6 6 3.1267 4.5159 -1.5007 7 6 2.7347 3.4074 0.7154 8 6 3.1410 4.5587 1.5990 9 6 1.9184 5.4289 1.8972 10 6 2.3057 2.1940 1.1331 11 6 2.1494 1.7536 2.5658 12 6 3.4369 1.1335 3.0440 13 8 4.3878 1.0562 2.2950 14 7 3.5319 0.6646 4.3041 15 6 4.7834 0.0613 4.7688 16 1 5.6553 0.4210 4.2223 17 6 4.9554 0.0988 6.2964 18 6 5.5364 -1.3208 6.1872 19 1 6.6145 -1.3402 6.0284 20 7 5.1034 -2.2165 7.2625 21 6 5.8776 -3.2905 7.6124 22 1 6.8071 -3.4774 7.0953 23 6 5.4670 -4.1395 8.6310 24 7 4.3339 -3.9120 9.2608 25 14 6.5227 -5.6050 9.1078 26 1 7.8574 -5.1296 9.5529 27 1 5.8679 -6.3476 10.2145 28 1 6.6825 -6.5023 7.9354 29 6 4.7211 -1.4704 4.8897 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3635 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.1932 4.4496 -1.7156 36 1 2.5644 4.4671 -2.4331 37 1 2.9154 5.4598 -0.9980 38 1 3.5491 4.1732 2.5334 39 1 3.8977 5.1570 1.0913 40 1 2.2124 6.2618 2.5359 41 1 1.5102 5.8143 0.9629 42 1 1.1617 4.8306 2.4048 43 1 1.9091 2.6165 3.1870 44 1 1.3454 1.0208 2.6351 45 1 2.7717 0.7268 4.9032 46 1 5.6775 0.8412 6.6364 47 1 4.0123 0.1454 6.8410 48 1 4.2684 -2.0487 7.7267 49 1 4.0472 -4.5050 9.9728 50 1 3.7138 -1.8553 5.0490 51 1 5.2544 -1.9932 4.0957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022213979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:15 Heat of formation + Delta-G solvation = 28.344907 kcal Electronic energy + Delta-G solvation = -28836.836165 eV Core-core repulsion = 24965.163315 eV Total energy + Delta-G solvation = -3871.672850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.45669 -40.84791 -39.18763 -36.08778 -35.72353 -34.88810 -34.14835 -32.90190 -31.97264 -31.32964 -28.83854 -26.97159 -26.50164 -26.15381 -24.56886 -24.36049 -23.52323 -21.54469 -20.88433 -20.29800 -20.14547 -19.12685 -17.94228 -17.62449 -17.22940 -16.53914 -16.32111 -16.15068 -16.04139 -15.47115 -15.37064 -15.10868 -14.95208 -14.90168 -14.41766 -14.32790 -13.92891 -13.86711 -13.66041 -13.38314 -13.29447 -13.26030 -13.13487 -12.94472 -12.76397 -12.72748 -12.46425 -12.26261 -12.19661 -12.15207 -12.02126 -11.99560 -11.93254 -11.70939 -11.47950 -11.29978 -10.86105 -10.74482 -9.99732 -9.88126 -9.19360 -8.96217 -7.93794 -5.21441 0.92330 1.48787 1.50999 1.57014 1.62971 1.70157 1.78373 2.47949 2.60251 3.37658 3.53618 3.60294 3.74087 3.89553 3.95453 4.00824 4.02919 4.13331 4.18983 4.24170 4.31778 4.33081 4.35403 4.39653 4.44936 4.47921 4.60317 4.63715 4.69928 4.77043 4.81856 4.85098 4.92633 4.94418 4.97513 5.05605 5.05769 5.18314 5.20306 5.20575 5.32641 5.35302 5.37556 5.44559 5.53471 5.74912 5.76243 6.18834 6.28755 6.74573 6.80588 7.35399 7.43180 8.11420 8.35235 9.28957 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.002147 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.135467 B =13036.446108 C =13670.859586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.046 4.046 3 C 0.080 3.920 4 N -0.338 5.338 5 N -0.380 5.380 6 C 0.093 3.907 7 C 0.101 3.899 8 C -0.061 4.061 9 C -0.140 4.140 10 C -0.235 4.235 11 C -0.053 4.053 12 C 0.512 3.488 13 O -0.583 6.583 14 N -0.707 5.707 15 C 0.139 3.861 16 H 0.099 0.901 17 C -0.137 4.137 18 C 0.149 3.851 19 H 0.074 0.926 20 N -0.722 5.722 21 C -0.246 4.246 22 H 0.074 0.926 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.970 3.030 26 H -0.278 1.278 27 H -0.295 1.295 28 H -0.281 1.281 29 C -0.171 4.171 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.414 0.586 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.376 0.624 49 H 0.251 0.749 50 H 0.072 0.928 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 22.392 -17.900 30.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.085 4.085 3 C -0.085 4.085 4 N -0.160 5.160 5 N -0.162 5.162 6 C -0.047 4.047 7 C -0.027 4.027 8 C -0.100 4.100 9 C -0.198 4.198 10 C -0.246 4.246 11 C -0.094 4.094 12 C 0.299 3.701 13 O -0.462 6.462 14 N -0.359 5.359 15 C 0.033 3.967 16 H 0.117 0.883 17 C -0.176 4.176 18 C 0.038 3.962 19 H 0.092 0.908 20 N -0.360 5.360 21 C -0.378 4.378 22 H 0.091 0.909 23 C -0.266 4.266 24 N -0.617 5.617 25 Si 0.799 3.201 26 H -0.204 1.204 27 H -0.221 1.221 28 H -0.207 1.207 29 C -0.213 4.213 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.143 0.857 44 H 0.135 0.865 45 H 0.251 0.749 46 H 0.100 0.900 47 H 0.109 0.891 48 H 0.209 0.791 49 H 0.060 0.940 50 H 0.091 0.909 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.248 22.389 -19.813 31.014 hybrid contribution 0.165 -1.223 1.341 1.822 sum -8.083 21.166 -18.472 29.233 Atomic orbital electron populations 1.21642 0.92485 1.02881 1.02229 1.19989 0.97418 0.88229 1.02898 1.22413 0.98194 0.97273 0.90634 1.77189 1.23351 0.91966 1.23521 1.48522 1.51669 1.11201 1.04765 1.22114 1.01653 0.85847 0.95069 1.21248 0.98954 0.97852 0.84696 1.20326 0.99668 0.92311 0.97732 1.21712 0.96364 0.99466 1.02234 1.19243 1.15836 0.94407 0.95153 1.19968 0.94553 1.02882 0.91990 1.21295 0.90480 0.77118 0.81157 1.90680 1.41441 1.58340 1.55736 1.45938 1.15622 1.60749 1.13554 1.22021 0.87946 0.92231 0.94547 0.88307 1.23632 1.02260 0.97449 0.94265 1.21697 0.96723 0.90034 0.87746 0.90767 1.42470 1.24827 1.28934 1.39782 1.19641 1.02233 1.02754 1.13166 0.90854 1.25521 0.98993 1.02466 0.99637 1.69786 1.23811 1.40867 1.27253 0.85264 0.78113 0.79486 0.77212 1.20398 1.22100 1.20734 1.24188 1.01308 0.96178 0.99600 0.91589 0.93215 0.90596 0.91342 0.90455 0.90509 0.88877 0.86895 0.89628 0.89548 0.89960 0.92590 0.91998 0.85691 0.86527 0.74898 0.90036 0.89110 0.79105 0.93985 0.90919 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.89 71.98 0.71 -1.52 16 2 C -0.05 -1.01 6.17 29.85 0.18 -0.83 16 3 C 0.08 2.09 6.47 43.10 0.28 2.37 16 4 N -0.34 -9.42 12.57 -47.39 -0.60 -10.02 16 5 N -0.38 -8.38 4.01 -356.03 -1.43 -9.81 16 6 C 0.09 1.16 11.10 127.77 1.42 2.58 16 7 C 0.10 2.09 6.19 41.41 0.26 2.34 16 8 C -0.06 -0.81 5.56 29.85 0.17 -0.65 16 9 C -0.14 -1.20 9.89 71.98 0.71 -0.49 16 10 C -0.23 -5.41 4.59 -20.14 -0.09 -5.50 16 11 C -0.05 -0.95 5.46 29.10 0.16 -0.80 16 12 C 0.51 12.88 7.82 87.65 0.69 13.56 16 13 O -0.58 -20.41 15.65 -3.05 -0.05 -20.45 16 14 N -0.71 -16.13 5.36 -440.05 -2.36 -18.49 16 15 C 0.14 3.94 4.21 45.51 0.19 4.13 16 16 H 0.10 3.05 7.50 -2.38 -0.02 3.03 16 17 C -0.14 -3.98 7.58 31.12 0.24 -3.74 16 18 C 0.15 5.70 4.48 45.58 0.20 5.91 16 19 H 0.07 2.89 8.10 -2.39 -0.02 2.87 16 20 N -0.72 -35.55 5.41 -320.18 -1.73 -37.28 16 21 C -0.25 -13.58 9.97 84.03 0.84 -12.74 16 22 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 23 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 24 N -0.97 -58.17 13.06 21.65 0.28 -57.88 16 25 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 27 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 29 C -0.17 -5.94 7.70 31.18 0.24 -5.70 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.73 7.92 -2.39 -0.02 1.71 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 0.71 7.66 -2.38 -0.02 0.69 16 38 H 0.09 1.23 7.77 -2.39 -0.02 1.21 16 39 H 0.09 0.94 7.72 -2.38 -0.02 0.92 16 40 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.13 1.45 7.77 -2.38 -0.02 1.44 16 44 H 0.12 1.67 7.92 -2.39 -0.02 1.65 16 45 H 0.41 7.01 8.71 -92.71 -0.81 6.20 16 46 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.09 2.53 8.09 -2.38 -0.02 2.52 16 48 H 0.38 19.53 7.93 -92.71 -0.73 18.80 16 49 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 50 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 51 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -77.45 420.46 2.19 -75.27 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -0.62 Total: 35.46 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 6.66 Total: -4.80 kcal Atomic # 7 Polarization: -127.64 SS G_CDS: -5.83 Total: -133.48 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.05 Total: -20.45 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -77.45 2.19 -75.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022213979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.613 kcal (2) G-P(sol) polarization free energy of solvation -77.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds