Wall clock time and date at job start Tue Mar 31 2020 19:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 C 1.50694 * 109.47347 * 180.02562 * 3 2 1 5 5 C 1.38046 * 126.29386 * 270.00628 * 4 3 2 6 6 C 1.47425 * 126.41619 * 0.02562 * 5 4 3 7 7 O 1.21606 * 119.99782 * 359.70863 * 6 5 4 8 8 N 1.34771 * 120.00633 * 179.71473 * 6 5 4 9 9 C 1.46495 * 120.00607 * 179.72523 * 8 6 5 10 10 C 1.53004 * 109.47413 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.49250 * 54.99865 * 10 9 8 12 12 C 1.53036 * 109.49607 * 175.06265 * 10 9 8 13 13 C 1.53046 * 109.53827 * 181.31632 * 12 10 9 14 14 C 1.53188 * 109.31170 * 298.63817 * 13 12 10 15 15 N 1.46927 * 108.77774 * 54.63065 * 14 13 12 16 16 C 1.36943 * 120.62926 * 126.38784 * 15 14 13 17 17 H 1.07994 * 119.99715 * 207.68289 * 16 15 14 18 18 C 1.38806 * 119.99762 * 27.68840 * 16 15 14 19 19 N 1.31623 * 120.00283 * 17.35684 * 18 16 15 20 20 Si 1.86805 * 119.99659 * 197.35807 * 18 16 15 21 21 H 1.48502 * 109.47297 * 89.99833 * 20 18 16 22 22 H 1.48502 * 109.46958 * 209.99705 * 20 18 16 23 23 H 1.48492 * 109.47175 * 329.99631 * 20 18 16 24 24 C 1.46930 * 118.76621 * 306.41230 * 15 14 13 25 25 C 1.41295 * 107.16972 * 179.75489 * 5 4 3 26 26 N 1.30443 * 108.02349 * 0.24441 * 25 5 4 27 27 N 1.34260 * 126.29079 * 90.18249 * 4 3 2 28 28 C 1.46496 * 125.75543 * 0.03087 * 27 4 3 29 29 H 1.09000 * 109.47003 * 299.98947 * 1 2 3 30 30 H 1.08998 * 109.47666 * 59.99496 * 1 2 3 31 31 H 1.09002 * 109.46867 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47003 * 240.01053 * 2 1 3 33 33 H 1.08998 * 109.47666 * 120.00504 * 2 1 3 34 34 H 1.09007 * 109.46770 * 60.00517 * 3 2 1 35 35 H 1.09002 * 109.47761 * 300.00965 * 3 2 1 36 36 H 0.97003 * 119.99429 * 359.97438 * 8 6 5 37 37 H 1.08994 * 109.47103 * 299.99698 * 9 8 6 38 38 H 1.09002 * 109.47162 * 59.99479 * 9 8 6 39 39 H 1.09001 * 109.46120 * 301.33694 * 12 10 9 40 40 H 1.09005 * 109.46345 * 61.31453 * 12 10 9 41 41 H 1.09000 * 109.49192 * 58.58366 * 13 12 10 42 42 H 1.08996 * 109.50087 * 178.68354 * 13 12 10 43 43 H 1.09001 * 109.58661 * 174.41881 * 14 13 12 44 44 H 1.09004 * 109.58714 * 294.70331 * 14 13 12 45 45 H 0.97006 * 119.99682 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.56411 * 293.78562 * 24 15 14 47 47 H 1.08997 * 109.61739 * 173.35334 * 24 15 14 48 48 H 1.08003 * 125.98607 * 180.23483 * 25 5 4 49 49 H 1.08997 * 109.47469 * 270.27788 * 28 27 4 50 50 H 1.09004 * 109.46844 * 30.27988 * 28 27 4 51 51 H 1.09003 * 109.47458 * 150.27209 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3645 1.4424 1.1117 6 6 3.9270 1.4415 2.5195 7 8 2.7408 1.4462 2.7875 8 7 4.8414 1.4355 3.5095 9 6 4.4066 1.4407 4.9084 10 6 5.6327 1.4316 5.8237 11 1 6.2837 2.2676 5.5680 12 6 5.1833 1.5611 7.2808 13 6 6.4107 1.5851 8.1948 14 6 7.1821 0.2705 8.0417 15 7 7.4922 0.0669 6.6200 16 6 8.7792 -0.1634 6.2126 17 1 9.0902 0.1223 5.2187 18 6 9.6837 -0.7643 7.0772 19 7 9.2496 -1.4157 8.1353 20 14 11.5172 -0.6483 6.7389 21 1 12.0673 0.5615 7.4015 22 1 12.1963 -1.8566 7.2720 23 1 11.7456 -0.5577 5.2745 24 6 6.3957 0.1155 5.6431 25 6 5.6993 1.4368 0.6482 26 7 5.6737 1.4392 -0.6560 27 7 4.3411 1.4463 -1.0831 28 6 3.8890 1.4515 -2.4766 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9565 -0.8899 36 1 5.7876 1.4315 3.2957 37 1 3.8152 2.3356 5.1018 38 1 3.8011 0.5557 5.1040 39 1 4.6192 2.4853 7.4061 40 1 4.5521 0.7119 7.5431 41 1 7.0548 2.4193 7.9169 42 1 6.0910 1.7008 9.2303 43 1 8.1083 0.3215 8.6140 44 1 6.5720 -0.5558 8.4067 45 1 9.8819 -1.8353 8.7397 46 1 5.7208 -0.7240 5.8099 47 1 6.8028 0.0648 4.6333 48 1 6.5854 1.4316 1.2656 49 1 3.7717 0.4252 -2.8244 50 1 2.9329 1.9703 -2.5463 51 1 4.6258 1.9631 -3.0958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023463444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:12 Heat of formation + Delta-G solvation = 36.069501 kcal Electronic energy + Delta-G solvation = -29238.255873 eV Core-core repulsion = 25366.917987 eV Total energy + Delta-G solvation = -3871.337887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.65284 -39.15976 -37.66188 -35.56750 -34.61559 -33.55503 -32.88264 -30.92065 -30.42650 -30.25680 -27.61708 -26.74761 -25.34700 -25.08678 -22.67249 -22.04223 -21.93217 -21.04680 -20.35428 -19.71590 -18.96438 -17.61665 -16.67553 -16.03848 -15.89875 -15.58396 -15.13334 -15.03314 -14.81022 -14.69486 -14.10602 -13.89250 -13.74164 -13.47210 -13.38544 -13.32392 -12.98778 -12.86887 -12.74213 -12.46979 -12.28389 -12.14366 -12.09759 -11.72437 -11.52870 -11.25778 -11.12764 -10.99202 -10.79279 -10.70274 -10.45587 -10.19481 -10.15164 -9.91809 -9.75897 -9.60160 -9.49719 -9.39608 -8.94044 -8.59699 -8.44861 -6.66357 -5.77777 -3.20297 1.38299 2.09571 2.12415 3.38339 3.45349 3.46256 3.47398 3.55483 4.21293 4.24789 4.49386 4.60029 4.70430 4.80972 4.82462 4.99584 5.00746 5.08323 5.15218 5.25509 5.33215 5.37840 5.48010 5.48245 5.51106 5.57754 5.64570 5.68881 5.84895 5.87577 6.00247 6.03554 6.06078 6.07485 6.26848 6.29282 6.37378 6.41445 6.61547 6.62549 6.64075 6.74392 6.82185 6.88946 7.00406 7.38183 7.41925 7.69098 7.76635 7.80146 8.45631 8.46138 9.22121 9.85828 10.42477 11.30456 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.002698 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.920369 B =10375.766317 C =11717.034111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.064 4.064 4 C 0.157 3.843 5 C -0.293 4.293 6 C 0.594 3.406 7 O -0.554 6.554 8 N -0.720 5.720 9 C 0.131 3.869 10 C -0.118 4.118 11 H 0.073 0.927 12 C -0.099 4.099 13 C -0.142 4.142 14 C 0.169 3.831 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.154 3.846 25 C 0.086 3.914 26 N -0.299 5.299 27 N -0.365 5.365 28 C 0.097 3.903 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.401 0.599 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.086 0.914 44 H 0.017 0.983 45 H 0.253 0.747 46 H 0.019 0.981 47 H 0.050 0.950 48 H 0.192 0.808 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.008 7.055 -17.269 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.103 4.103 4 C 0.025 3.975 5 C -0.307 4.307 6 C 0.381 3.619 7 O -0.434 6.434 8 N -0.370 5.370 9 C 0.007 3.993 10 C -0.139 4.139 11 H 0.091 0.909 12 C -0.137 4.137 13 C -0.181 4.181 14 C 0.043 3.957 15 N -0.314 5.314 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.731 3.269 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.028 3.972 25 C -0.102 4.102 26 N -0.118 5.118 27 N -0.144 5.144 28 C -0.045 4.045 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.131 0.869 35 H 0.090 0.910 36 H 0.236 0.764 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.035 0.965 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.069 0.931 48 H 0.208 0.792 49 H 0.097 0.903 50 H 0.107 0.893 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.045 6.945 -18.179 24.598 hybrid contribution 1.174 -0.017 0.472 1.265 sum -13.871 6.928 -17.707 23.536 Atomic orbital electron populations 1.21735 0.95006 1.01914 1.01985 1.21386 0.96251 0.94897 1.02488 1.20552 0.85772 0.99231 1.04726 1.21505 0.94557 0.95165 0.86279 1.20050 0.92780 1.24192 0.93727 1.17154 0.85462 0.75667 0.83594 1.90705 1.16519 1.51794 1.84346 1.45825 1.09788 1.75147 1.06286 1.21421 0.97107 1.01659 0.79097 1.21954 0.95509 1.01682 0.94717 0.90890 1.21337 0.97925 1.00353 0.94123 1.22171 0.96829 1.01775 0.97313 1.20795 0.98575 0.90625 0.85713 1.44048 1.02854 1.82643 1.01843 1.19180 0.85868 1.32989 1.00177 0.91673 1.25031 0.98563 0.97314 0.98746 1.70046 1.33020 1.35576 1.15979 0.86304 0.85597 0.77097 0.77853 1.21478 1.21819 1.20426 1.20896 0.90256 0.92482 0.93604 1.24112 0.97431 0.96700 0.91966 1.77212 0.95770 1.25393 1.13393 1.48345 1.04168 1.55606 1.06273 1.21937 1.01200 1.03783 0.77534 0.92020 0.92961 0.92500 0.92637 0.90804 0.86939 0.90992 0.76441 0.92048 0.91620 0.93457 0.92498 0.92776 0.93233 0.89575 0.96482 0.93656 0.96358 0.93134 0.79154 0.90325 0.89273 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.11 -1.00 5.92 -26.73 -0.16 -1.16 16 3 C -0.06 -0.59 4.90 -27.89 -0.14 -0.73 16 4 C 0.16 1.80 6.26 -81.60 -0.51 1.29 16 5 C -0.29 -3.82 6.13 -105.07 -0.64 -4.47 16 6 C 0.59 8.66 7.81 -12.52 -0.10 8.56 16 7 O -0.55 -9.22 14.84 5.27 0.08 -9.14 16 8 N -0.72 -9.91 5.32 -61.39 -0.33 -10.24 16 9 C 0.13 1.91 5.07 -4.04 -0.02 1.89 16 10 C -0.12 -1.93 2.37 -90.50 -0.21 -2.14 16 11 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 12 C -0.10 -1.62 5.17 -26.69 -0.14 -1.76 16 13 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 14 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16 15 N -0.59 -14.46 3.00 -172.32 -0.52 -14.98 16 16 C -0.25 -6.78 9.58 -15.06 -0.14 -6.93 16 17 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 18 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 19 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16 20 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.15 3.09 5.60 -3.71 -0.02 3.07 16 25 C 0.09 1.05 11.50 -16.98 -0.20 0.85 16 26 N -0.30 -3.81 12.50 30.86 0.39 -3.42 16 27 N -0.36 -3.86 3.98 -63.34 -0.25 -4.12 16 28 C 0.10 0.57 11.24 59.84 0.67 1.24 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.11 1.26 6.50 -51.93 -0.34 0.92 16 35 H 0.07 0.47 7.05 -51.93 -0.37 0.11 16 36 H 0.40 5.01 6.66 -40.82 -0.27 4.74 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.05 0.97 7.14 -51.93 -0.37 0.60 16 48 H 0.19 1.88 7.50 -52.48 -0.39 1.49 16 49 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.09 0.32 7.02 -51.93 -0.36 -0.04 16 51 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 403.88 15.07 6.09 6.09 Total: -1.00 -32.88 403.88 -9.19 -42.07 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -8.73 Total: 2.59 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -1.51 Total: 0.10 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.09 Total: -58.20 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.88 -9.19 -42.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023463444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.143 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds