Wall clock time and date at job start Tue Mar 31 2020 19:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 C 1.50694 * 109.47347 * 180.02562 * 3 2 1 5 5 C 1.38046 * 126.29386 * 270.00628 * 4 3 2 6 6 C 1.47425 * 126.41619 * 0.02562 * 5 4 3 7 7 O 1.21606 * 119.99782 * 359.70863 * 6 5 4 8 8 N 1.34771 * 120.00633 * 179.71473 * 6 5 4 9 9 C 1.46495 * 120.00607 * 179.72523 * 8 6 5 10 10 C 1.53004 * 109.47413 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.49250 * 54.99865 * 10 9 8 12 12 C 1.53036 * 109.49607 * 175.06265 * 10 9 8 13 13 C 1.53046 * 109.53827 * 181.31632 * 12 10 9 14 14 C 1.53188 * 109.31170 * 298.63817 * 13 12 10 15 15 N 1.46927 * 108.77774 * 54.63065 * 14 13 12 16 16 C 1.36943 * 120.62926 * 126.38784 * 15 14 13 17 17 H 1.07994 * 119.99715 * 207.68289 * 16 15 14 18 18 C 1.38806 * 119.99762 * 27.68840 * 16 15 14 19 19 N 1.31623 * 120.00283 * 17.35684 * 18 16 15 20 20 Si 1.86805 * 119.99659 * 197.35807 * 18 16 15 21 21 H 1.48502 * 109.47297 * 89.99833 * 20 18 16 22 22 H 1.48502 * 109.46958 * 209.99705 * 20 18 16 23 23 H 1.48492 * 109.47175 * 329.99631 * 20 18 16 24 24 C 1.46930 * 118.76621 * 306.41230 * 15 14 13 25 25 C 1.41295 * 107.16972 * 179.75489 * 5 4 3 26 26 N 1.30443 * 108.02349 * 0.24441 * 25 5 4 27 27 N 1.34260 * 126.29079 * 90.18249 * 4 3 2 28 28 C 1.46496 * 125.75543 * 0.03087 * 27 4 3 29 29 H 1.09000 * 109.47003 * 299.98947 * 1 2 3 30 30 H 1.08998 * 109.47666 * 59.99496 * 1 2 3 31 31 H 1.09002 * 109.46867 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47003 * 240.01053 * 2 1 3 33 33 H 1.08998 * 109.47666 * 120.00504 * 2 1 3 34 34 H 1.09007 * 109.46770 * 60.00517 * 3 2 1 35 35 H 1.09002 * 109.47761 * 300.00965 * 3 2 1 36 36 H 0.97003 * 119.99429 * 359.97438 * 8 6 5 37 37 H 1.08994 * 109.47103 * 299.99698 * 9 8 6 38 38 H 1.09002 * 109.47162 * 59.99479 * 9 8 6 39 39 H 1.09001 * 109.46120 * 301.33694 * 12 10 9 40 40 H 1.09005 * 109.46345 * 61.31453 * 12 10 9 41 41 H 1.09000 * 109.49192 * 58.58366 * 13 12 10 42 42 H 1.08996 * 109.50087 * 178.68354 * 13 12 10 43 43 H 1.09001 * 109.58661 * 174.41881 * 14 13 12 44 44 H 1.09004 * 109.58714 * 294.70331 * 14 13 12 45 45 H 0.97006 * 119.99682 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.56411 * 293.78562 * 24 15 14 47 47 H 1.08997 * 109.61739 * 173.35334 * 24 15 14 48 48 H 1.08003 * 125.98607 * 180.23483 * 25 5 4 49 49 H 1.08997 * 109.47469 * 270.27788 * 28 27 4 50 50 H 1.09004 * 109.46844 * 30.27988 * 28 27 4 51 51 H 1.09003 * 109.47458 * 150.27209 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3645 1.4424 1.1117 6 6 3.9270 1.4415 2.5195 7 8 2.7408 1.4462 2.7875 8 7 4.8414 1.4355 3.5095 9 6 4.4066 1.4407 4.9084 10 6 5.6327 1.4316 5.8237 11 1 6.2837 2.2676 5.5680 12 6 5.1833 1.5611 7.2808 13 6 6.4107 1.5851 8.1948 14 6 7.1821 0.2705 8.0417 15 7 7.4922 0.0669 6.6200 16 6 8.7792 -0.1634 6.2126 17 1 9.0902 0.1223 5.2187 18 6 9.6837 -0.7643 7.0772 19 7 9.2496 -1.4157 8.1353 20 14 11.5172 -0.6483 6.7389 21 1 12.0673 0.5615 7.4015 22 1 12.1963 -1.8566 7.2720 23 1 11.7456 -0.5577 5.2745 24 6 6.3957 0.1155 5.6431 25 6 5.6993 1.4368 0.6482 26 7 5.6737 1.4392 -0.6560 27 7 4.3411 1.4463 -1.0831 28 6 3.8890 1.4515 -2.4766 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9565 -0.8899 36 1 5.7876 1.4315 3.2957 37 1 3.8152 2.3356 5.1018 38 1 3.8011 0.5557 5.1040 39 1 4.6192 2.4853 7.4061 40 1 4.5521 0.7119 7.5431 41 1 7.0548 2.4193 7.9169 42 1 6.0910 1.7008 9.2303 43 1 8.1083 0.3215 8.6140 44 1 6.5720 -0.5558 8.4067 45 1 9.8819 -1.8353 8.7397 46 1 5.7208 -0.7240 5.8099 47 1 6.8028 0.0648 4.6333 48 1 6.5854 1.4316 1.2656 49 1 3.7717 0.4252 -2.8244 50 1 2.9329 1.9703 -2.5463 51 1 4.6258 1.9631 -3.0958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023463444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:10 Heat of formation + Delta-G solvation = 15.963423 kcal Electronic energy + Delta-G solvation = -29239.127738 eV Core-core repulsion = 25366.917987 eV Total energy + Delta-G solvation = -3872.209751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.52409 -40.35791 -39.17883 -36.44137 -35.94585 -34.64454 -34.18665 -32.28134 -32.03523 -31.45861 -28.49763 -27.42292 -27.22032 -26.40473 -23.90172 -23.53217 -22.68666 -22.45976 -21.37224 -20.87028 -20.30130 -18.74431 -18.43076 -16.96214 -16.83983 -16.75170 -16.63233 -16.23865 -15.83488 -15.70195 -15.51209 -15.26679 -14.97647 -14.73391 -14.52211 -14.38958 -14.08756 -13.95048 -13.69355 -13.63587 -13.55136 -13.35148 -13.06631 -12.99566 -12.85334 -12.49581 -12.41700 -12.24164 -12.18054 -11.94225 -11.93148 -11.78838 -11.54411 -11.53899 -11.28409 -11.07378 -10.78368 -10.51180 -10.40410 -10.05929 -9.55958 -8.65985 -7.84809 -5.30079 0.49599 1.13796 1.40955 1.48175 1.49567 1.57974 2.38893 2.49313 2.52764 3.29665 3.46966 3.51369 3.64055 3.89472 4.02147 4.05157 4.06632 4.10009 4.12431 4.20869 4.33521 4.40853 4.44555 4.50470 4.60615 4.62974 4.64474 4.67802 4.80833 4.81630 4.91517 4.92862 4.94944 4.99178 5.05091 5.14065 5.19320 5.27673 5.33453 5.37195 5.38405 5.42192 5.44735 5.56842 5.61528 5.69797 5.81219 5.89332 6.41050 6.49033 6.68682 7.17193 7.35227 7.88920 8.40662 9.21409 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.002698 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.920369 B =10375.766317 C =11717.034111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.059 4.059 4 C 0.160 3.840 5 C -0.321 4.321 6 C 0.593 3.407 7 O -0.579 6.579 8 N -0.718 5.718 9 C 0.142 3.858 10 C -0.100 4.100 11 H 0.076 0.924 12 C -0.097 4.097 13 C -0.130 4.130 14 C 0.172 3.828 15 N -0.609 5.609 16 C -0.259 4.259 17 H 0.071 0.929 18 C -0.053 4.053 19 N -0.937 5.937 20 Si 0.965 3.035 21 H -0.286 1.286 22 H -0.298 1.298 23 H -0.266 1.266 24 C 0.153 3.847 25 C 0.082 3.918 26 N -0.323 5.323 27 N -0.359 5.359 28 C 0.083 3.917 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.407 0.593 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.051 0.949 44 H -0.008 1.008 45 H 0.248 0.752 46 H 0.004 0.996 47 H 0.056 0.944 48 H 0.205 0.795 49 H 0.093 0.907 50 H 0.117 0.883 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.077 8.602 -19.597 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.098 4.098 4 C 0.026 3.974 5 C -0.335 4.335 6 C 0.382 3.618 7 O -0.461 6.461 8 N -0.368 5.368 9 C 0.018 3.982 10 C -0.121 4.121 11 H 0.095 0.905 12 C -0.135 4.135 13 C -0.169 4.169 14 C 0.046 3.954 15 N -0.332 5.332 16 C -0.389 4.389 17 H 0.089 0.911 18 C -0.248 4.248 19 N -0.583 5.583 20 Si 0.794 3.206 21 H -0.213 1.213 22 H -0.225 1.225 23 H -0.191 1.191 24 C 0.028 3.972 25 C -0.105 4.105 26 N -0.143 5.143 27 N -0.138 5.138 28 C -0.056 4.056 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.243 0.757 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.010 0.990 45 H 0.057 0.943 46 H 0.022 0.978 47 H 0.074 0.926 48 H 0.222 0.778 49 H 0.111 0.889 50 H 0.135 0.865 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.115 8.511 -20.553 27.469 hybrid contribution 1.445 -0.538 1.109 1.900 sum -14.670 7.972 -19.444 25.628 Atomic orbital electron populations 1.21712 0.93729 1.02337 1.02514 1.21332 0.97303 0.94436 1.01516 1.20578 0.84329 0.99508 1.05400 1.21823 0.95486 0.93884 0.86200 1.20073 0.93663 1.26430 0.93371 1.17378 0.85107 0.75024 0.84289 1.90687 1.17481 1.53107 1.84814 1.45772 1.10120 1.75018 1.05908 1.21228 0.95993 1.01759 0.79185 1.21714 0.95686 0.99207 0.95448 0.90518 1.21334 0.96940 1.02025 0.93156 1.21997 0.97189 0.98401 0.99299 1.20636 0.97153 0.92484 0.85086 1.44319 1.03303 1.82828 1.02769 1.19560 0.87151 1.31865 1.00306 0.91105 1.25789 1.02528 0.97589 0.98931 1.70207 1.33988 1.37042 1.17100 0.85294 0.80664 0.76501 0.78179 1.21273 1.22539 1.19090 1.21016 0.89217 0.94127 0.92874 1.24355 0.97722 0.96321 0.92107 1.77151 0.97337 1.26200 1.13568 1.48697 1.03301 1.54162 1.07642 1.22389 1.02720 1.05329 0.75184 0.93169 0.90720 0.92177 0.91292 0.94056 0.88921 0.87571 0.75727 0.90880 0.92585 0.90088 0.92675 0.92839 0.91277 0.93047 0.98999 0.94257 0.97760 0.92583 0.77819 0.88892 0.86480 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.11 -1.77 5.92 30.60 0.18 -1.59 16 3 C -0.06 -0.99 4.90 29.85 0.15 -0.85 16 4 C 0.16 3.44 6.26 42.14 0.26 3.70 16 5 C -0.32 -8.20 6.13 -20.15 -0.12 -8.32 16 6 C 0.59 17.11 7.81 86.66 0.68 17.79 16 7 O -0.58 -19.26 14.84 -4.05 -0.06 -19.32 16 8 N -0.72 -19.20 5.32 -466.39 -2.48 -21.68 16 9 C 0.14 3.97 5.07 86.38 0.44 4.41 16 10 C -0.10 -3.13 2.37 -10.72 -0.03 -3.16 16 11 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 12 C -0.10 -2.97 5.17 30.62 0.16 -2.81 16 13 C -0.13 -4.74 6.08 30.67 0.19 -4.55 16 14 C 0.17 8.32 5.31 86.36 0.46 8.78 16 15 N -0.61 -30.18 3.00 -699.09 -2.09 -32.27 16 16 C -0.26 -14.02 9.58 84.03 0.81 -13.22 16 17 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 18 C -0.05 -2.97 4.91 84.86 0.42 -2.56 16 19 N -0.94 -55.95 11.19 21.65 0.24 -55.71 16 20 Si 0.97 44.83 29.59 68.60 2.03 46.86 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 C 0.15 6.13 5.60 86.36 0.48 6.62 16 25 C 0.08 1.95 11.50 85.65 0.99 2.94 16 26 N -0.32 -7.87 12.50 -56.27 -0.70 -8.57 16 27 N -0.36 -6.92 3.98 -354.32 -1.41 -8.33 16 28 C 0.08 0.73 11.24 127.77 1.44 2.16 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 2.00 6.50 -2.38 -0.02 1.98 16 35 H 0.11 1.02 7.05 -2.39 -0.02 1.00 16 36 H 0.41 9.83 6.66 -92.71 -0.62 9.22 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.05 2.83 6.04 -2.39 -0.01 2.81 16 44 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 46 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 47 H 0.06 2.14 7.14 -2.39 -0.02 2.12 16 48 H 0.21 3.91 7.50 -2.91 -0.02 3.89 16 49 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.12 0.37 7.02 -2.39 -0.02 0.35 16 51 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -73.10 403.88 3.02 -70.08 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.30 Total: 20.76 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 7.20 Total: 8.18 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -6.45 Total: -126.56 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.06 Total: -19.32 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -73.10 3.02 -70.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023463444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.043 kcal (2) G-P(sol) polarization free energy of solvation -73.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds