Wall clock time and date at job start Tue Mar 31 2020 19:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46831 * 2 1 4 4 C 1.50697 * 109.46958 * 119.99982 * 2 1 3 5 5 C 1.35362 * 126.38680 * 325.02787 * 4 2 1 6 6 C 1.41498 * 105.50523 * 179.97438 * 5 4 2 7 7 C 1.47711 * 126.52321 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99590 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00371 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99859 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46677 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.70482 * 299.75550 * 11 10 9 13 13 C 1.52768 * 109.50809 * 179.64036 * 11 10 9 14 14 C 1.53034 * 109.38420 * 185.70319 * 13 11 10 15 15 C 1.53041 * 109.53728 * 61.24463 * 14 13 11 16 16 C 1.53200 * 109.31031 * 298.63429 * 15 14 13 17 17 N 1.46921 * 109.58956 * 60.11503 * 11 10 9 18 18 C 1.36939 * 120.62719 * 353.41690 * 17 11 10 19 19 H 1.07995 * 120.00181 * 32.36316 * 18 17 11 20 20 C 1.38814 * 119.99693 * 212.36117 * 18 17 11 21 21 N 1.31620 * 120.00265 * 10.27451 * 20 18 17 22 22 Si 1.86803 * 119.99861 * 190.27543 * 20 18 17 23 23 H 1.48501 * 109.47180 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47395 * 120.00189 * 22 20 18 25 25 H 1.48510 * 109.46965 * 240.00314 * 22 20 18 26 26 N 1.31811 * 106.96201 * 0.23986 * 6 5 4 27 27 N 1.28464 * 110.07157 * 359.59121 * 26 6 5 28 28 C 1.46501 * 124.88285 * 180.20183 * 27 26 6 29 29 H 1.08993 * 109.47345 * 299.99812 * 1 2 3 30 30 H 1.09003 * 109.46860 * 60.00392 * 1 2 3 31 31 H 1.09000 * 109.47418 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47108 * 239.99690 * 2 1 3 33 33 H 1.09002 * 109.46388 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47410 * 299.99767 * 3 2 1 35 35 H 1.09002 * 109.47058 * 60.00193 * 3 2 1 36 36 H 1.08002 * 127.24935 * 359.97438 * 5 4 2 37 37 H 0.96993 * 119.99898 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47076 * 60.00340 * 10 9 7 39 39 H 1.08998 * 109.47591 * 299.99971 * 10 9 7 40 40 H 1.09004 * 109.56408 * 65.67254 * 13 11 10 41 41 H 1.09000 * 109.35758 * 305.62208 * 13 11 10 42 42 H 1.08994 * 109.46629 * 301.22210 * 14 13 11 43 43 H 1.09001 * 109.44853 * 181.25336 * 14 13 11 44 44 H 1.08998 * 109.50460 * 178.68465 * 15 14 13 45 45 H 1.09002 * 109.49833 * 58.58240 * 15 14 13 46 46 H 1.09005 * 109.58290 * 294.84519 * 16 15 14 47 47 H 1.08998 * 109.70057 * 174.49310 * 16 15 14 48 48 H 0.96995 * 120.00153 * 179.97438 * 21 20 18 49 49 H 1.08998 * 109.47795 * 270.24977 * 28 27 26 50 50 H 1.08995 * 109.47175 * 30.25471 * 28 27 26 51 51 H 1.09010 * 109.46786 * 150.24949 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.4581 -0.6968 2.4562 6 6 2.2881 -1.5020 3.2716 7 6 2.0882 -1.8021 4.7041 8 8 1.1318 -1.3388 5.2945 9 7 2.9656 -2.5903 5.3563 10 6 2.7676 -2.8874 6.7772 11 6 3.8960 -3.7955 7.2702 12 1 3.8906 -4.7279 6.7057 13 6 3.6953 -4.0987 8.7540 14 6 4.8973 -4.8876 9.2783 15 6 6.1676 -4.0484 9.1225 16 6 6.3971 -3.7474 7.6380 17 7 5.1874 -3.1184 7.0906 18 6 5.2614 -1.9210 6.4303 19 1 4.4418 -1.2202 6.4895 20 6 6.3899 -1.6079 5.6851 21 7 7.2967 -2.5311 5.4446 22 14 6.6216 0.1236 5.0237 23 1 5.4687 0.9670 5.4296 24 1 7.8749 0.6999 5.5734 25 1 6.7051 0.0803 3.5416 26 7 3.2767 -1.9287 2.5114 27 7 3.1388 -1.4797 1.3157 28 6 4.0534 -1.7580 0.2056 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.5563 -0.1802 2.7499 37 1 3.7285 -2.9602 4.8852 38 1 1.8102 -3.3903 6.9132 39 1 2.7742 -1.9583 7.3471 40 1 2.7878 -4.6877 8.8868 41 1 3.6060 -3.1626 9.3052 42 1 5.0009 -5.8120 8.7102 43 1 4.7450 -5.1237 10.3315 44 1 7.0198 -4.6014 9.5175 45 1 6.0550 -3.1127 9.6703 46 1 6.5998 -4.6758 7.1041 47 1 7.2435 -3.0697 7.5271 48 1 8.0851 -2.3125 4.9235 49 1 4.8360 -0.9998 0.1807 50 1 4.5039 -2.7408 0.3436 51 1 3.5005 -1.7404 -0.7338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024432340.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:16 Heat of formation + Delta-G solvation = 50.741809 kcal Electronic energy + Delta-G solvation = -30414.250323 eV Core-core repulsion = 26543.548675 eV Total energy + Delta-G solvation = -3870.701647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.45697 -38.89441 -37.54255 -35.85401 -34.03436 -33.26239 -32.99284 -30.72448 -29.84887 -29.42100 -27.48618 -27.35857 -25.84169 -24.71349 -22.89253 -22.27936 -22.00779 -20.56952 -20.07906 -19.21064 -18.76568 -17.30395 -16.48379 -16.12473 -15.82726 -15.47064 -15.04687 -14.64730 -14.21412 -14.08293 -13.91058 -13.76008 -13.62089 -13.35815 -13.25170 -13.09749 -12.79953 -12.61252 -12.52621 -12.34713 -12.30909 -11.96712 -11.71705 -11.64430 -11.40127 -11.13972 -11.03626 -10.89268 -10.73623 -10.49474 -10.39660 -10.21421 -10.07479 -9.92887 -9.58302 -9.41851 -9.25349 -8.83820 -8.69430 -8.49932 -8.07423 -6.55597 -5.76965 -3.24393 2.01866 2.38547 2.66425 3.35835 3.43438 3.49694 3.90910 4.09069 4.40753 4.50160 4.52976 4.65964 4.89785 5.06456 5.17880 5.22506 5.31309 5.38170 5.40503 5.42829 5.52147 5.58904 5.60896 5.66837 5.68894 5.73688 5.79359 5.90950 5.96500 6.03932 6.04070 6.14029 6.22562 6.23555 6.38388 6.41312 6.48136 6.65389 6.71096 6.77358 6.78918 6.91804 6.98334 7.05664 7.29051 7.44866 7.73022 7.87310 8.15097 8.48656 8.51367 8.98885 9.24862 9.84992 10.43200 11.30291 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.003857 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.223425 B = 7257.649655 C = 8351.661183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.021 4.021 3 C -0.145 4.145 4 C 0.006 3.994 5 C -0.177 4.177 6 C -0.007 4.007 7 C 0.595 3.405 8 O -0.560 6.560 9 N -0.679 5.679 10 C 0.134 3.866 11 C 0.160 3.840 12 H 0.031 0.969 13 C -0.127 4.127 14 C -0.107 4.107 15 C -0.144 4.144 16 C 0.174 3.826 17 N -0.588 5.588 18 C -0.246 4.246 19 H 0.069 0.931 20 C 0.014 3.986 21 N -0.900 5.900 22 Si 0.892 3.108 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.292 1.292 26 N -0.245 5.245 27 N -0.284 5.284 28 C 0.086 3.914 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.157 0.843 37 H 0.421 0.579 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.053 0.947 46 H 0.017 0.983 47 H 0.086 0.914 48 H 0.251 0.749 49 H 0.082 0.918 50 H 0.098 0.902 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.417 0.515 -10.148 13.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 C -0.203 4.203 4 C -0.118 4.118 5 C -0.205 4.205 6 C -0.167 4.167 7 C 0.378 3.622 8 O -0.439 6.439 9 N -0.329 5.329 10 C 0.010 3.990 11 C 0.053 3.947 12 H 0.049 0.951 13 C -0.167 4.167 14 C -0.145 4.145 15 C -0.184 4.184 16 C 0.048 3.952 17 N -0.312 5.312 18 C -0.376 4.376 19 H 0.086 0.914 20 C -0.185 4.185 21 N -0.544 5.544 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.219 1.219 26 N -0.080 5.080 27 N -0.072 5.072 28 C -0.054 4.054 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.174 0.826 37 H 0.260 0.740 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.035 0.965 47 H 0.104 0.896 48 H 0.062 0.938 49 H 0.101 0.899 50 H 0.116 0.884 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.847 0.150 -9.888 12.625 hybrid contribution 0.164 1.238 -0.636 1.401 sum -7.683 1.388 -10.524 13.104 Atomic orbital electron populations 1.21813 0.93229 1.02475 1.02426 1.19620 0.96595 0.95331 0.92559 1.21855 1.01192 0.94725 1.02482 1.21277 0.91409 1.01028 0.98083 1.21384 1.03083 1.04936 0.91114 1.22018 0.95214 1.03886 0.95623 1.16874 0.82607 0.79171 0.83505 1.90710 1.31588 1.54038 1.67546 1.45903 1.27354 1.48593 1.11046 1.21330 0.96953 0.99523 0.81216 1.20642 0.87013 0.93910 0.93091 0.95114 1.21871 0.97007 0.99883 0.97950 1.21357 0.95885 0.98355 0.98871 1.22205 0.95880 0.98740 1.01543 1.20768 0.90643 0.96732 0.87034 1.44057 1.00726 1.22380 1.64070 1.19196 1.03338 0.92752 1.22271 0.91365 1.25038 0.98884 0.96974 0.97572 1.69983 1.11508 1.31270 1.41641 0.86364 0.77643 0.85342 0.78451 1.20284 1.21733 1.21885 1.73752 1.22575 1.20619 0.91013 1.45304 1.19099 1.34921 1.07871 1.22100 0.92894 1.04539 0.85888 0.91708 0.92032 0.92215 0.90432 0.92702 0.91916 0.91799 0.82556 0.73985 0.92514 0.91478 0.92996 0.92080 0.92907 0.93770 0.93611 0.92869 0.96466 0.89605 0.93840 0.89944 0.88356 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.78 37.16 0.33 -0.86 16 2 C -0.02 -0.20 3.10 -91.77 -0.28 -0.49 16 3 C -0.14 -1.32 9.18 37.16 0.34 -0.97 16 4 C 0.01 0.08 5.84 -82.21 -0.48 -0.40 16 5 C -0.18 -2.95 9.96 -39.37 -0.39 -3.35 16 6 C -0.01 -0.14 7.13 -82.76 -0.59 -0.73 16 7 C 0.59 12.96 7.83 -12.39 -0.10 12.86 16 8 O -0.56 -13.08 16.93 5.30 0.09 -12.99 16 9 N -0.68 -14.63 3.86 -61.29 -0.24 -14.87 16 10 C 0.13 2.71 4.42 -4.04 -0.02 2.69 16 11 C 0.16 3.26 3.00 -67.82 -0.20 3.05 16 12 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 13 C -0.13 -2.22 5.34 -26.83 -0.14 -2.36 16 14 C -0.11 -1.81 5.89 -26.69 -0.16 -1.97 16 15 C -0.14 -2.76 6.08 -26.61 -0.16 -2.92 16 16 C 0.17 4.04 5.25 -3.71 -0.02 4.02 16 17 N -0.59 -14.01 2.97 -165.03 -0.49 -14.50 16 18 C -0.25 -6.44 6.91 -15.06 -0.10 -6.54 16 19 H 0.07 1.87 5.91 -52.49 -0.31 1.56 16 20 C 0.01 0.39 5.05 -17.43 -0.09 0.30 16 21 N -0.90 -25.18 11.12 55.49 0.62 -24.56 16 22 Si 0.89 22.36 29.57 -169.99 -5.03 17.33 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 N -0.24 -4.74 11.67 33.42 0.39 -4.35 16 27 N -0.28 -4.35 3.70 -63.85 -0.24 -4.58 16 28 C 0.09 0.90 11.11 59.85 0.66 1.57 16 29 H 0.06 0.58 7.35 -51.93 -0.38 0.20 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.60 6.86 -51.93 -0.36 0.24 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.16 2.40 7.47 -52.49 -0.39 2.01 16 37 H 0.42 9.70 7.11 -40.82 -0.29 9.41 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.46 7.42 -51.93 -0.39 1.08 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 2.25 6.19 -51.93 -0.32 1.93 16 48 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 51 H 0.09 0.62 6.88 -51.92 -0.36 0.26 16 LS Contribution 399.76 15.07 6.02 6.02 Total: -1.00 -31.96 399.76 -8.97 -40.93 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -8.69 Total: 7.66 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.41 Total: 3.91 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.04 Total: -62.86 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.96 -8.97 -40.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024432340.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.669 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds