Wall clock time and date at job start Tue Mar 31 2020 19:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46831 * 2 1 4 4 C 1.50697 * 109.46958 * 119.99982 * 2 1 3 5 5 C 1.35362 * 126.38680 * 325.02787 * 4 2 1 6 6 C 1.41498 * 105.50523 * 179.97438 * 5 4 2 7 7 C 1.47711 * 126.52321 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99590 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00371 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99859 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46677 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.70482 * 299.75550 * 11 10 9 13 13 C 1.52768 * 109.50809 * 179.64036 * 11 10 9 14 14 C 1.53034 * 109.38420 * 185.70319 * 13 11 10 15 15 C 1.53041 * 109.53728 * 61.24463 * 14 13 11 16 16 C 1.53200 * 109.31031 * 298.63429 * 15 14 13 17 17 N 1.46921 * 109.58956 * 60.11503 * 11 10 9 18 18 C 1.36939 * 120.62719 * 353.41690 * 17 11 10 19 19 H 1.07995 * 120.00181 * 32.36316 * 18 17 11 20 20 C 1.38814 * 119.99693 * 212.36117 * 18 17 11 21 21 N 1.31620 * 120.00265 * 10.27451 * 20 18 17 22 22 Si 1.86803 * 119.99861 * 190.27543 * 20 18 17 23 23 H 1.48501 * 109.47180 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47395 * 120.00189 * 22 20 18 25 25 H 1.48510 * 109.46965 * 240.00314 * 22 20 18 26 26 N 1.31811 * 106.96201 * 0.23986 * 6 5 4 27 27 N 1.28464 * 110.07157 * 359.59121 * 26 6 5 28 28 C 1.46501 * 124.88285 * 180.20183 * 27 26 6 29 29 H 1.08993 * 109.47345 * 299.99812 * 1 2 3 30 30 H 1.09003 * 109.46860 * 60.00392 * 1 2 3 31 31 H 1.09000 * 109.47418 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47108 * 239.99690 * 2 1 3 33 33 H 1.09002 * 109.46388 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47410 * 299.99767 * 3 2 1 35 35 H 1.09002 * 109.47058 * 60.00193 * 3 2 1 36 36 H 1.08002 * 127.24935 * 359.97438 * 5 4 2 37 37 H 0.96993 * 119.99898 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47076 * 60.00340 * 10 9 7 39 39 H 1.08998 * 109.47591 * 299.99971 * 10 9 7 40 40 H 1.09004 * 109.56408 * 65.67254 * 13 11 10 41 41 H 1.09000 * 109.35758 * 305.62208 * 13 11 10 42 42 H 1.08994 * 109.46629 * 301.22210 * 14 13 11 43 43 H 1.09001 * 109.44853 * 181.25336 * 14 13 11 44 44 H 1.08998 * 109.50460 * 178.68465 * 15 14 13 45 45 H 1.09002 * 109.49833 * 58.58240 * 15 14 13 46 46 H 1.09005 * 109.58290 * 294.84519 * 16 15 14 47 47 H 1.08998 * 109.70057 * 174.49310 * 16 15 14 48 48 H 0.96995 * 120.00153 * 179.97438 * 21 20 18 49 49 H 1.08998 * 109.47795 * 270.24977 * 28 27 26 50 50 H 1.08995 * 109.47175 * 30.25471 * 28 27 26 51 51 H 1.09010 * 109.46786 * 150.24949 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.4581 -0.6968 2.4562 6 6 2.2881 -1.5020 3.2716 7 6 2.0882 -1.8021 4.7041 8 8 1.1318 -1.3388 5.2945 9 7 2.9656 -2.5903 5.3563 10 6 2.7676 -2.8874 6.7772 11 6 3.8960 -3.7955 7.2702 12 1 3.8906 -4.7279 6.7057 13 6 3.6953 -4.0987 8.7540 14 6 4.8973 -4.8876 9.2783 15 6 6.1676 -4.0484 9.1225 16 6 6.3971 -3.7474 7.6380 17 7 5.1874 -3.1184 7.0906 18 6 5.2614 -1.9210 6.4303 19 1 4.4418 -1.2202 6.4895 20 6 6.3899 -1.6079 5.6851 21 7 7.2967 -2.5311 5.4446 22 14 6.6216 0.1236 5.0237 23 1 5.4687 0.9670 5.4296 24 1 7.8749 0.6999 5.5734 25 1 6.7051 0.0803 3.5416 26 7 3.2767 -1.9287 2.5114 27 7 3.1388 -1.4797 1.3157 28 6 4.0534 -1.7580 0.2056 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.5563 -0.1802 2.7499 37 1 3.7285 -2.9602 4.8852 38 1 1.8102 -3.3903 6.9132 39 1 2.7742 -1.9583 7.3471 40 1 2.7878 -4.6877 8.8868 41 1 3.6060 -3.1626 9.3052 42 1 5.0009 -5.8120 8.7102 43 1 4.7450 -5.1237 10.3315 44 1 7.0198 -4.6014 9.5175 45 1 6.0550 -3.1127 9.6703 46 1 6.5998 -4.6758 7.1041 47 1 7.2435 -3.0697 7.5271 48 1 8.0851 -2.3125 4.9235 49 1 4.8360 -0.9998 0.1807 50 1 4.5039 -2.7408 0.3436 51 1 3.5005 -1.7404 -0.7338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024432340.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:13 Heat of formation + Delta-G solvation = 31.311091 kcal Electronic energy + Delta-G solvation = -30415.092902 eV Core-core repulsion = 26543.548675 eV Total energy + Delta-G solvation = -3871.544227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.71332 -40.59342 -39.23766 -36.70951 -35.70533 -34.91394 -34.44059 -32.37622 -31.69481 -30.60487 -28.74768 -28.03069 -27.52973 -26.41851 -24.13188 -23.76960 -23.43939 -22.21105 -21.38583 -20.78581 -20.23060 -18.65915 -18.10028 -17.49480 -17.34110 -17.15390 -16.67522 -16.10734 -15.75507 -15.49309 -15.31462 -15.12765 -14.83216 -14.72366 -14.65223 -14.46544 -14.07838 -14.00118 -13.67822 -13.61297 -13.44979 -13.36564 -12.99609 -12.90728 -12.83613 -12.63623 -12.56597 -12.35420 -12.12127 -12.06716 -11.80274 -11.77710 -11.67068 -11.52309 -11.31363 -11.09974 -10.95303 -10.54099 -10.19064 -9.92191 -9.78155 -8.53376 -7.85046 -5.32463 0.59099 1.12953 1.30918 1.34721 1.43480 1.58786 2.32874 2.45503 2.50002 3.31179 3.38566 3.51232 3.58431 3.88378 3.98460 4.06126 4.16867 4.22823 4.27139 4.28209 4.37185 4.42533 4.49087 4.54836 4.59895 4.61663 4.65492 4.70198 4.77771 4.82214 4.87315 4.96310 5.00404 5.01802 5.13500 5.14355 5.22669 5.29183 5.33934 5.37291 5.38396 5.43840 5.47043 5.59696 5.64156 5.74145 5.85608 5.89590 6.44570 6.60378 6.97331 7.20157 7.27841 7.87637 8.40474 9.19709 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.003857 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.223425 B = 7257.649655 C = 8351.661183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.018 4.018 3 C -0.143 4.143 4 C 0.028 3.972 5 C -0.197 4.197 6 C -0.042 4.042 7 C 0.590 3.410 8 O -0.584 6.584 9 N -0.682 5.682 10 C 0.137 3.863 11 C 0.160 3.840 12 H 0.030 0.970 13 C -0.121 4.121 14 C -0.102 4.102 15 C -0.135 4.135 16 C 0.178 3.822 17 N -0.602 5.602 18 C -0.230 4.230 19 H 0.054 0.946 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 0.934 3.066 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.294 1.294 26 N -0.280 5.280 27 N -0.280 5.280 28 C 0.073 3.927 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.161 0.839 37 H 0.413 0.587 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.000 1.000 47 H 0.051 0.949 48 H 0.247 0.753 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.472 0.257 -11.388 14.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.038 4.038 3 C -0.201 4.201 4 C -0.097 4.097 5 C -0.225 4.225 6 C -0.201 4.201 7 C 0.376 3.624 8 O -0.465 6.465 9 N -0.331 5.331 10 C 0.013 3.987 11 C 0.054 3.946 12 H 0.048 0.952 13 C -0.161 4.161 14 C -0.140 4.140 15 C -0.174 4.174 16 C 0.053 3.947 17 N -0.326 5.326 18 C -0.360 4.360 19 H 0.071 0.929 20 C -0.221 4.221 21 N -0.568 5.568 22 Si 0.765 3.235 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.221 1.221 26 N -0.116 5.116 27 N -0.069 5.069 28 C -0.066 4.066 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.179 0.821 37 H 0.250 0.750 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.018 0.982 47 H 0.069 0.931 48 H 0.057 0.943 49 H 0.107 0.893 50 H 0.115 0.885 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.904 -0.122 -11.109 14.238 hybrid contribution 0.464 1.322 -0.334 1.440 sum -8.440 1.200 -11.443 14.269 Atomic orbital electron populations 1.21823 0.92201 1.02524 1.03280 1.19873 0.97358 0.95337 0.91253 1.21860 1.00755 0.94316 1.03195 1.21945 0.89855 0.99135 0.98763 1.21568 1.03587 1.05426 0.91958 1.21925 0.96971 1.06066 0.95092 1.17222 0.82127 0.78559 0.84533 1.90666 1.32449 1.54929 1.68466 1.45953 1.27003 1.48645 1.11459 1.21373 0.98050 0.98814 0.80465 1.20806 0.85152 0.93215 0.95430 0.95244 1.21822 0.98892 1.00355 0.95005 1.21343 0.93958 0.97690 1.00959 1.22056 0.98230 0.99282 0.97851 1.20599 0.89441 0.94818 0.89849 1.44242 1.02267 1.22050 1.64070 1.19114 1.02334 0.93368 1.21219 0.92862 1.25414 0.99300 0.98810 0.98606 1.70079 1.11825 1.32103 1.42796 0.85711 0.76945 0.83066 0.77790 1.21424 1.21481 1.22127 1.73664 1.23075 1.22131 0.92770 1.45790 1.19707 1.33872 1.07486 1.22566 0.93268 1.04724 0.86034 0.92778 0.89315 0.92597 0.87371 0.93388 0.88968 0.93388 0.82099 0.74961 0.90381 0.93392 0.89748 0.92669 0.92461 0.90501 0.91615 0.93564 0.98220 0.93053 0.94303 0.89268 0.88462 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.78 71.98 0.63 -1.34 16 2 C -0.02 -0.30 3.10 -11.54 -0.04 -0.33 16 3 C -0.14 -2.21 9.18 71.98 0.66 -1.55 16 4 C 0.03 0.75 5.84 41.40 0.24 0.99 16 5 C -0.20 -6.67 9.96 22.41 0.22 -6.45 16 6 C -0.04 -1.73 7.13 42.46 0.30 -1.43 16 7 C 0.59 26.79 7.83 86.75 0.68 27.47 16 8 O -0.58 -28.27 16.93 -3.96 -0.07 -28.34 16 9 N -0.68 -30.49 3.86 -466.09 -1.80 -32.29 16 10 C 0.14 5.60 4.42 86.38 0.38 5.99 16 11 C 0.16 6.45 3.00 44.83 0.13 6.58 16 12 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 13 C -0.12 -3.96 5.34 30.53 0.16 -3.80 16 14 C -0.10 -3.15 5.89 30.62 0.18 -2.97 16 15 C -0.14 -4.97 6.08 30.67 0.19 -4.79 16 16 C 0.18 8.40 5.25 86.37 0.45 8.86 16 17 N -0.60 -29.14 2.97 -676.03 -2.01 -31.15 16 18 C -0.23 -12.39 6.91 84.03 0.58 -11.81 16 19 H 0.05 3.04 5.91 -2.91 -0.02 3.02 16 20 C -0.02 -1.38 5.05 84.86 0.43 -0.95 16 21 N -0.92 -53.18 11.12 21.65 0.24 -52.94 16 22 Si 0.93 47.31 29.57 68.60 2.03 49.34 16 23 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 24 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 26 N -0.28 -11.08 11.67 -48.18 -0.56 -11.64 16 27 N -0.28 -8.35 3.70 -355.93 -1.32 -9.66 16 28 C 0.07 1.37 11.11 127.77 1.42 2.79 16 29 H 0.05 0.88 7.35 -2.39 -0.02 0.86 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 1.14 6.86 -2.39 -0.02 1.12 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.16 5.08 7.47 -2.91 -0.02 5.06 16 37 H 0.41 19.87 7.11 -92.71 -0.66 19.21 16 38 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.05 2.14 7.42 -2.39 -0.02 2.13 16 40 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.00 -0.02 8.14 -2.38 -0.02 -0.03 16 47 H 0.05 2.77 6.19 -2.39 -0.01 2.75 16 48 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 49 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 51 H 0.14 1.30 6.88 -2.38 -0.02 1.28 16 Total: -1.00 -73.01 399.76 3.40 -69.60 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.26 Total: 29.82 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 6.63 Total: 17.26 kcal Atomic # 7 Polarization: -132.23 SS G_CDS: -5.45 Total: -137.68 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.07 Total: -28.34 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -73.01 3.40 -69.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024432340.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.913 kcal (2) G-P(sol) polarization free energy of solvation -73.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds