Wall clock time and date at job start Tue Mar 31 2020 20:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47137 * 2 1 4 4 C 1.52999 * 109.47339 * 240.00177 * 2 1 3 5 5 C 1.50701 * 109.47185 * 119.99885 * 2 1 3 6 6 C 1.39670 * 126.06638 * 75.00270 * 5 2 1 7 7 C 1.38407 * 105.35914 * 180.02562 * 6 5 2 8 8 C 1.47161 * 126.88617 * 179.97438 * 7 6 5 9 9 O 1.21631 * 120.00094 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00129 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99890 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.46916 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.69918 * 60.06266 * 12 11 10 14 14 C 1.53629 * 109.66304 * 180.64890 * 12 11 10 15 15 C 1.53040 * 109.23905 * 174.54935 * 14 12 11 16 16 C 1.53041 * 109.54005 * 298.51256 * 15 14 12 17 17 C 1.53187 * 109.31123 * 61.36669 * 16 15 14 18 18 N 1.46919 * 109.58991 * 299.70230 * 12 11 10 19 19 C 1.36946 * 120.62758 * 6.62742 * 18 12 11 20 20 H 1.07999 * 119.99694 * 328.45812 * 19 18 12 21 21 C 1.38810 * 119.99561 * 148.73169 * 19 18 12 22 22 N 1.31611 * 120.00445 * 345.88661 * 21 19 18 23 23 Si 1.86804 * 119.99601 * 165.89076 * 21 19 18 24 24 H 1.48502 * 109.46933 * 89.99832 * 23 21 19 25 25 H 1.48493 * 109.47072 * 209.99651 * 23 21 19 26 26 H 1.48498 * 109.47318 * 329.99974 * 23 21 19 27 27 N 1.36601 * 106.22982 * 0.25872 * 7 6 5 28 28 H 0.97004 * 125.19097 * 179.73766 * 27 7 6 29 29 N 1.28440 * 109.62063 * 359.55598 * 27 7 6 30 30 H 1.09008 * 109.47236 * 299.99802 * 1 2 3 31 31 H 1.09006 * 109.47528 * 59.99861 * 1 2 3 32 32 H 1.09001 * 109.47409 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47540 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47387 * 300.00634 * 3 2 1 35 35 H 1.09008 * 109.46896 * 59.99990 * 3 2 1 36 36 H 1.09001 * 109.46631 * 300.00184 * 4 2 1 37 37 H 1.08999 * 109.47235 * 59.99617 * 4 2 1 38 38 H 1.08999 * 109.47491 * 179.97438 * 4 2 1 39 39 H 1.07997 * 127.32501 * 0.02562 * 6 5 2 40 40 H 0.97001 * 120.00021 * 359.97438 * 10 8 7 41 41 H 1.08995 * 109.47734 * 59.99799 * 11 10 8 42 42 H 1.09005 * 109.46882 * 299.99356 * 11 10 8 43 43 H 1.09000 * 109.63129 * 54.56391 * 14 12 11 44 44 H 1.08996 * 109.46011 * 294.43528 * 14 12 11 45 45 H 1.08999 * 109.45598 * 178.49418 * 15 14 12 46 46 H 1.09000 * 109.44754 * 58.53015 * 15 14 12 47 47 H 1.09002 * 109.49387 * 301.41362 * 16 15 14 48 48 H 1.08993 * 109.52400 * 181.33534 * 16 15 14 49 49 H 1.08999 * 109.58707 * 185.57918 * 17 16 15 50 50 H 1.08996 * 109.70538 * 65.22177 * 17 16 15 51 51 H 0.97005 * 120.00172 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 2.0309 -2.0911 1.4409 7 6 2.5814 -2.2709 2.6981 8 6 2.8024 -3.5503 3.3909 9 8 2.4892 -4.5952 2.8529 10 7 3.3519 -3.5641 4.6214 11 6 3.5725 -4.8378 5.3108 12 6 4.2036 -4.5743 6.6795 13 1 3.5381 -3.9515 7.2773 14 6 4.4518 -5.9083 7.3998 15 6 5.2053 -5.6440 8.7054 16 6 6.5609 -5.0057 8.3938 17 6 6.3391 -3.6665 7.6839 18 7 5.4924 -3.8910 6.5043 19 6 5.8944 -3.4665 5.2659 20 1 5.5968 -4.0147 4.3843 21 6 6.6889 -2.3347 5.1444 22 7 6.8283 -1.5158 6.1652 23 14 7.5601 -1.9741 3.5318 24 1 6.6804 -1.1458 2.6684 25 1 8.8210 -1.2386 3.8041 26 1 7.8713 -3.2512 2.8409 27 7 2.8724 -1.0223 3.1695 28 1 3.2674 -0.8292 4.0342 29 7 2.5468 -0.1431 2.2916 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6766 -1.7488 -1.2492 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 1.6759 -2.8560 0.7662 40 1 3.6021 -2.7308 5.0503 41 1 4.2406 -5.4615 4.7171 42 1 2.6190 -5.3495 5.4425 43 1 5.0463 -6.5633 6.7629 44 1 3.4968 -6.3848 7.6210 45 1 5.3598 -6.5855 9.2324 46 1 4.6213 -4.9691 9.3312 47 1 7.1355 -5.6693 7.7475 48 1 7.1072 -4.8393 9.3221 49 1 7.2989 -3.2550 7.3717 50 1 5.8453 -2.9692 8.3607 51 1 7.3833 -0.7247 6.0801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024526872.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:28 Heat of formation + Delta-G solvation = 36.266861 kcal Electronic energy + Delta-G solvation = -30287.051959 eV Core-core repulsion = 26415.722631 eV Total energy + Delta-G solvation = -3871.329328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.34767 -39.14859 -37.71852 -36.87949 -34.34923 -33.17779 -31.31910 -30.78078 -30.16131 -29.91768 -27.29285 -27.25909 -26.17493 -24.97618 -22.90648 -22.35680 -22.13279 -20.76367 -20.27562 -19.30034 -18.60239 -18.24293 -16.55489 -15.83448 -15.48386 -15.46484 -15.33036 -14.80357 -14.35610 -14.10196 -13.99691 -13.88469 -13.60032 -13.52376 -13.34062 -13.20667 -12.92237 -12.51286 -12.31553 -12.16043 -12.13599 -11.85389 -11.65674 -11.31337 -11.26227 -11.06030 -11.05268 -10.99915 -10.84775 -10.66023 -10.40202 -10.38216 -10.24163 -10.08466 -9.76517 -9.58126 -9.41809 -8.96174 -8.89458 -8.69790 -8.37587 -6.78016 -5.96955 -3.44075 1.59114 2.75849 3.08459 3.24275 3.34005 3.38089 3.52751 3.68706 4.32375 4.49270 4.77408 5.00590 5.07120 5.13783 5.20150 5.24951 5.39468 5.41835 5.56215 5.59426 5.59872 5.63982 5.71937 5.78088 5.80739 5.88090 5.89420 5.93165 5.95788 6.05249 6.07415 6.14929 6.21303 6.29424 6.31196 6.32691 6.37589 6.51893 6.62614 6.65953 6.67513 6.76525 6.85866 6.96447 7.21042 7.29231 7.55746 7.66936 7.98713 8.25537 8.28297 8.58945 9.03876 9.65357 10.23740 11.08839 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014941 B = 0.003618 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.534895 B = 7736.352565 C = 8831.160054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.019 3.981 3 C -0.135 4.135 4 C -0.139 4.139 5 C 0.030 3.970 6 C -0.161 4.161 7 C -0.022 4.022 8 C 0.581 3.419 9 O -0.544 6.544 10 N -0.689 5.689 11 C 0.135 3.865 12 C 0.160 3.840 13 H 0.033 0.967 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.173 3.827 18 N -0.589 5.589 19 C -0.255 4.255 20 H 0.069 0.931 21 C 0.010 3.990 22 N -0.897 5.897 23 Si 0.888 3.112 24 H -0.286 1.286 25 H -0.288 1.288 26 H -0.278 1.278 27 N -0.371 5.371 28 H 0.449 0.551 29 N -0.268 5.268 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.159 0.841 40 H 0.410 0.590 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.046 0.954 49 H 0.084 0.916 50 H 0.019 0.981 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.475 0.819 -4.849 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.017 3.983 3 C -0.192 4.192 4 C -0.197 4.197 5 C -0.128 4.128 6 C -0.190 4.190 7 C -0.151 4.151 8 C 0.366 3.634 9 O -0.422 6.422 10 N -0.339 5.339 11 C 0.011 3.989 12 C 0.053 3.947 13 H 0.050 0.950 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.183 4.183 17 C 0.048 3.952 18 N -0.313 5.313 19 C -0.384 4.384 20 H 0.087 0.913 21 C -0.190 4.190 22 N -0.541 5.541 23 Si 0.717 3.283 24 H -0.212 1.212 25 H -0.214 1.214 26 H -0.204 1.204 27 N -0.086 5.086 28 H 0.295 0.705 29 N -0.101 5.101 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.176 0.824 40 H 0.247 0.753 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.102 0.898 50 H 0.037 0.963 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.301 1.226 -4.730 10.507 hybrid contribution 0.956 -0.069 -0.317 1.010 sum -8.345 1.157 -5.046 9.821 Atomic orbital electron populations 1.21858 0.93533 1.02207 1.01793 1.18853 0.95199 0.94736 0.89519 1.21768 1.01436 0.94382 1.01646 1.21880 1.01512 1.00453 0.95849 1.21811 1.03668 0.91679 0.95618 1.21858 1.05294 0.96269 0.95553 1.21872 1.08805 0.86839 0.97625 1.16983 0.78452 0.86487 0.81523 1.90774 1.53172 1.31756 1.66483 1.45916 1.60026 1.11474 1.16483 1.21358 0.99062 0.85086 0.93379 1.20836 0.88800 0.92672 0.92432 0.94963 1.22008 0.99195 0.98230 0.97239 1.21361 0.97284 0.99245 0.96619 1.22186 0.95872 1.00804 0.99468 1.20760 0.96764 0.90728 0.86984 1.44092 1.14717 1.67362 1.05136 1.19197 1.29117 1.05106 0.85005 0.91324 1.25054 1.01501 0.95588 0.96821 1.69995 1.40983 1.12948 1.30126 0.86523 0.79750 0.78263 0.83771 1.21237 1.21393 1.20382 1.43721 1.45488 1.02926 1.16511 0.70503 1.73044 1.16624 1.20264 1.00180 0.92541 0.92160 0.92257 0.92467 0.92676 0.92014 0.92083 0.92113 0.92372 0.82377 0.75263 0.91154 0.92184 0.91983 0.92971 0.93642 0.92876 0.92797 0.93497 0.89768 0.96316 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.46 37.15 0.31 -1.04 16 2 C 0.02 0.22 0.96 -155.66 -0.15 0.07 16 3 C -0.13 -1.52 8.04 37.16 0.30 -1.22 16 4 C -0.14 -1.45 8.20 37.16 0.30 -1.14 16 5 C 0.03 0.45 5.65 -82.47 -0.47 -0.01 16 6 C -0.16 -2.57 10.12 -38.98 -0.39 -2.96 16 7 C -0.02 -0.39 7.16 -82.06 -0.59 -0.97 16 8 C 0.58 11.01 7.80 -12.64 -0.10 10.91 16 9 O -0.54 -11.52 16.92 5.25 0.09 -11.43 16 10 N -0.69 -12.60 3.85 -61.46 -0.24 -12.84 16 11 C 0.13 2.42 4.44 -4.04 -0.02 2.40 16 12 C 0.16 2.91 3.03 -67.37 -0.20 2.71 16 13 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 14 C -0.13 -2.03 5.40 -26.38 -0.14 -2.17 16 15 C -0.11 -1.68 5.88 -26.69 -0.16 -1.84 16 16 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 17 C 0.17 3.74 5.26 -3.71 -0.02 3.72 16 18 N -0.59 -12.80 2.97 -164.52 -0.49 -13.29 16 19 C -0.25 -6.08 6.96 -15.06 -0.10 -6.19 16 20 H 0.07 1.71 5.88 -52.49 -0.31 1.40 16 21 C 0.01 0.25 4.96 -17.43 -0.09 0.16 16 22 N -0.90 -23.28 11.23 55.49 0.62 -22.66 16 23 Si 0.89 20.88 29.58 -169.99 -5.03 15.85 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 N -0.37 -6.13 6.85 33.48 0.23 -5.90 16 28 H 0.45 6.98 8.22 -190.45 -1.57 5.41 16 29 N -0.27 -4.41 11.48 33.64 0.39 -4.03 16 30 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.73 8.08 -51.92 -0.42 0.31 16 36 H 0.06 0.61 7.60 -51.93 -0.39 0.22 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.16 2.31 7.79 -52.49 -0.41 1.90 16 40 H 0.41 7.63 6.58 -40.82 -0.27 7.36 16 41 H 0.07 1.39 7.41 -51.93 -0.38 1.00 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.08 2.08 6.19 -51.93 -0.32 1.75 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 51 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 398.94 15.07 6.01 6.01 Total: -1.00 -27.91 398.94 -10.06 -37.96 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -9.97 Total: 10.62 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.67 Total: -0.31 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.51 Total: -58.71 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -27.91 -10.06 -37.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024526872.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.230 kcal (2) G-P(sol) polarization free energy of solvation -27.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds