Wall clock time and date at job start Tue Mar 31 2020 20:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47137 * 2 1 4 4 C 1.52999 * 109.47339 * 240.00177 * 2 1 3 5 5 C 1.50701 * 109.47185 * 119.99885 * 2 1 3 6 6 C 1.39670 * 126.06638 * 75.00270 * 5 2 1 7 7 C 1.38407 * 105.35914 * 180.02562 * 6 5 2 8 8 C 1.47161 * 126.88617 * 179.97438 * 7 6 5 9 9 O 1.21631 * 120.00094 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00129 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99890 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.46916 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.69918 * 60.06266 * 12 11 10 14 14 C 1.53629 * 109.66304 * 180.64890 * 12 11 10 15 15 C 1.53040 * 109.23905 * 174.54935 * 14 12 11 16 16 C 1.53041 * 109.54005 * 298.51256 * 15 14 12 17 17 C 1.53187 * 109.31123 * 61.36669 * 16 15 14 18 18 N 1.46919 * 109.58991 * 299.70230 * 12 11 10 19 19 C 1.36946 * 120.62758 * 6.62742 * 18 12 11 20 20 H 1.07999 * 119.99694 * 328.45812 * 19 18 12 21 21 C 1.38810 * 119.99561 * 148.73169 * 19 18 12 22 22 N 1.31611 * 120.00445 * 345.88661 * 21 19 18 23 23 Si 1.86804 * 119.99601 * 165.89076 * 21 19 18 24 24 H 1.48502 * 109.46933 * 89.99832 * 23 21 19 25 25 H 1.48493 * 109.47072 * 209.99651 * 23 21 19 26 26 H 1.48498 * 109.47318 * 329.99974 * 23 21 19 27 27 N 1.36601 * 106.22982 * 0.25872 * 7 6 5 28 28 H 0.97004 * 125.19097 * 179.73766 * 27 7 6 29 29 N 1.28440 * 109.62063 * 359.55598 * 27 7 6 30 30 H 1.09008 * 109.47236 * 299.99802 * 1 2 3 31 31 H 1.09006 * 109.47528 * 59.99861 * 1 2 3 32 32 H 1.09001 * 109.47409 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47540 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47387 * 300.00634 * 3 2 1 35 35 H 1.09008 * 109.46896 * 59.99990 * 3 2 1 36 36 H 1.09001 * 109.46631 * 300.00184 * 4 2 1 37 37 H 1.08999 * 109.47235 * 59.99617 * 4 2 1 38 38 H 1.08999 * 109.47491 * 179.97438 * 4 2 1 39 39 H 1.07997 * 127.32501 * 0.02562 * 6 5 2 40 40 H 0.97001 * 120.00021 * 359.97438 * 10 8 7 41 41 H 1.08995 * 109.47734 * 59.99799 * 11 10 8 42 42 H 1.09005 * 109.46882 * 299.99356 * 11 10 8 43 43 H 1.09000 * 109.63129 * 54.56391 * 14 12 11 44 44 H 1.08996 * 109.46011 * 294.43528 * 14 12 11 45 45 H 1.08999 * 109.45598 * 178.49418 * 15 14 12 46 46 H 1.09000 * 109.44754 * 58.53015 * 15 14 12 47 47 H 1.09002 * 109.49387 * 301.41362 * 16 15 14 48 48 H 1.08993 * 109.52400 * 181.33534 * 16 15 14 49 49 H 1.08999 * 109.58707 * 185.57918 * 17 16 15 50 50 H 1.08996 * 109.70538 * 65.22177 * 17 16 15 51 51 H 0.97005 * 120.00172 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 2.0309 -2.0911 1.4409 7 6 2.5814 -2.2709 2.6981 8 6 2.8024 -3.5503 3.3909 9 8 2.4892 -4.5952 2.8529 10 7 3.3519 -3.5641 4.6214 11 6 3.5725 -4.8378 5.3108 12 6 4.2036 -4.5743 6.6795 13 1 3.5381 -3.9515 7.2773 14 6 4.4518 -5.9083 7.3998 15 6 5.2053 -5.6440 8.7054 16 6 6.5609 -5.0057 8.3938 17 6 6.3391 -3.6665 7.6839 18 7 5.4924 -3.8910 6.5043 19 6 5.8944 -3.4665 5.2659 20 1 5.5968 -4.0147 4.3843 21 6 6.6889 -2.3347 5.1444 22 7 6.8283 -1.5158 6.1652 23 14 7.5601 -1.9741 3.5318 24 1 6.6804 -1.1458 2.6684 25 1 8.8210 -1.2386 3.8041 26 1 7.8713 -3.2512 2.8409 27 7 2.8724 -1.0223 3.1695 28 1 3.2674 -0.8292 4.0342 29 7 2.5468 -0.1431 2.2916 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6766 -1.7488 -1.2492 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 1.6759 -2.8560 0.7662 40 1 3.6021 -2.7308 5.0503 41 1 4.2406 -5.4615 4.7171 42 1 2.6190 -5.3495 5.4425 43 1 5.0463 -6.5633 6.7629 44 1 3.4968 -6.3848 7.6210 45 1 5.3598 -6.5855 9.2324 46 1 4.6213 -4.9691 9.3312 47 1 7.1355 -5.6693 7.7475 48 1 7.1072 -4.8393 9.3221 49 1 7.2989 -3.2550 7.3717 50 1 5.8453 -2.9692 8.3607 51 1 7.3833 -0.7247 6.0801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024526872.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:27 Heat of formation + Delta-G solvation = 20.921078 kcal Electronic energy + Delta-G solvation = -30287.717402 eV Core-core repulsion = 26415.722631 eV Total energy + Delta-G solvation = -3871.994771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.62344 -40.67041 -39.26668 -37.83641 -35.85160 -34.94621 -32.77523 -32.04496 -31.78881 -31.34576 -28.23151 -28.05218 -27.71850 -26.62704 -24.25629 -23.81197 -23.45720 -22.24786 -21.64821 -20.80314 -20.02559 -19.36953 -18.28438 -17.45213 -16.98656 -16.80194 -16.69946 -16.07473 -15.91323 -15.67534 -15.29429 -14.98147 -14.89170 -14.80937 -14.67539 -14.54254 -14.37655 -14.09216 -13.66159 -13.47591 -13.07492 -12.96508 -12.92291 -12.87718 -12.61566 -12.50811 -12.39015 -12.30770 -12.11213 -12.00910 -11.89042 -11.82756 -11.54621 -11.50970 -11.27664 -11.11912 -10.97889 -10.58953 -10.30727 -10.14319 -9.89997 -8.60506 -7.89788 -5.35912 0.20920 1.31017 1.39323 1.43358 1.53975 1.79576 2.07912 2.23666 2.41025 3.24886 3.40310 3.54367 3.70315 3.83414 3.95704 4.13068 4.20833 4.22917 4.25257 4.36269 4.41603 4.46431 4.53817 4.63267 4.67361 4.74447 4.84772 4.85841 4.86301 4.95429 4.99217 5.06896 5.07976 5.13095 5.16475 5.22325 5.26147 5.27265 5.31701 5.45485 5.46950 5.49158 5.50146 5.52329 5.61577 5.70559 5.82644 5.93370 6.38606 6.48968 6.95962 7.08878 7.14219 7.83699 8.36851 9.13428 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014941 B = 0.003618 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.534895 B = 7736.352565 C = 8831.160054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.015 3.985 3 C -0.132 4.132 4 C -0.137 4.137 5 C 0.034 3.966 6 C -0.160 4.160 7 C -0.042 4.042 8 C 0.583 3.417 9 O -0.569 6.569 10 N -0.687 5.687 11 C 0.138 3.862 12 C 0.159 3.841 13 H 0.037 0.963 14 C -0.122 4.122 15 C -0.103 4.103 16 C -0.136 4.136 17 C 0.177 3.823 18 N -0.601 5.601 19 C -0.234 4.234 20 H 0.060 0.940 21 C -0.024 4.024 22 N -0.917 5.917 23 Si 0.926 3.074 24 H -0.293 1.293 25 H -0.294 1.294 26 H -0.285 1.285 27 N -0.373 5.373 28 H 0.450 0.550 29 N -0.282 5.282 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.171 0.829 40 H 0.408 0.592 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.045 0.955 48 H 0.063 0.937 49 H 0.049 0.951 50 H 0.003 0.997 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.082 0.026 -5.208 12.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.013 3.987 3 C -0.189 4.189 4 C -0.195 4.195 5 C -0.124 4.124 6 C -0.189 4.189 7 C -0.171 4.171 8 C 0.369 3.631 9 O -0.449 6.449 10 N -0.336 5.336 11 C 0.014 3.986 12 C 0.053 3.947 13 H 0.054 0.946 14 C -0.161 4.161 15 C -0.140 4.140 16 C -0.175 4.175 17 C 0.052 3.948 18 N -0.325 5.325 19 C -0.365 4.365 20 H 0.077 0.923 21 C -0.221 4.221 22 N -0.563 5.563 23 Si 0.757 3.243 24 H -0.220 1.220 25 H -0.220 1.220 26 H -0.211 1.211 27 N -0.089 5.089 28 H 0.296 0.704 29 N -0.116 5.116 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.189 0.811 40 H 0.245 0.755 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.067 0.933 50 H 0.021 0.979 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.912 0.419 -5.071 12.040 hybrid contribution 1.421 0.164 -0.225 1.448 sum -9.492 0.582 -5.296 10.885 Atomic orbital electron populations 1.21834 0.91823 1.02606 1.02676 1.19091 0.96503 0.94692 0.88433 1.21752 1.00328 0.94332 1.02537 1.21885 1.00575 1.00894 0.96153 1.22448 1.02322 0.91533 0.96126 1.22142 1.04554 0.97126 0.95117 1.21823 1.10243 0.86608 0.98398 1.17127 0.77908 0.86703 0.81402 1.90748 1.54416 1.32712 1.67014 1.45924 1.59703 1.11554 1.16462 1.21381 0.99673 0.84743 0.92776 1.21007 0.87044 0.93701 0.92937 0.94570 1.21966 1.00819 0.96431 0.96901 1.21346 0.95544 1.00475 0.96670 1.22048 0.97685 0.98269 0.99475 1.20586 0.94799 0.92560 0.86863 1.44260 1.16389 1.67482 1.04402 1.19159 1.27677 1.03977 0.85700 0.92273 1.25336 1.02778 0.96131 0.97845 1.70074 1.42040 1.13306 1.30899 0.85929 0.78784 0.77346 0.82237 1.22015 1.22022 1.21120 1.43719 1.45807 1.02678 1.16716 0.70442 1.73059 1.17187 1.20556 1.00750 0.93359 0.89598 0.92120 0.94155 0.89953 0.92961 0.91779 0.89484 0.93859 0.81111 0.75502 0.93053 0.90002 0.92718 0.89812 0.90792 0.92363 0.93657 0.91833 0.93294 0.97852 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.46 71.98 0.61 -1.69 16 2 C 0.01 0.32 0.96 -52.93 -0.05 0.27 16 3 C -0.13 -2.77 8.04 71.98 0.58 -2.20 16 4 C -0.14 -2.57 8.20 71.98 0.59 -1.98 16 5 C 0.03 0.99 5.65 43.05 0.24 1.24 16 6 C -0.16 -5.04 10.12 22.66 0.23 -4.81 16 7 C -0.04 -1.47 7.16 40.79 0.29 -1.17 16 8 C 0.58 22.16 7.80 86.59 0.68 22.84 16 9 O -0.57 -24.03 16.92 -4.13 -0.07 -24.10 16 10 N -0.69 -25.17 3.85 -466.62 -1.80 -26.97 16 11 C 0.14 4.82 4.44 86.38 0.38 5.20 16 12 C 0.16 5.59 3.03 45.13 0.14 5.73 16 13 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 14 C -0.12 -3.54 5.40 30.82 0.17 -3.38 16 15 C -0.10 -2.89 5.88 30.62 0.18 -2.71 16 16 C -0.14 -4.63 6.08 30.67 0.19 -4.44 16 17 C 0.18 7.69 5.26 86.36 0.45 8.15 16 18 N -0.60 -26.06 2.97 -674.43 -2.00 -28.06 16 19 C -0.23 -11.34 6.96 84.03 0.58 -10.75 16 20 H 0.06 2.99 5.88 -2.91 -0.02 2.97 16 21 C -0.02 -1.21 4.96 84.86 0.42 -0.79 16 22 N -0.92 -48.86 11.23 21.65 0.24 -48.62 16 23 Si 0.93 43.96 29.58 68.60 2.03 45.98 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 N -0.37 -12.55 6.85 -47.99 -0.33 -12.88 16 28 H 0.45 14.45 8.22 -220.00 -1.81 12.64 16 29 N -0.28 -9.33 11.48 -47.49 -0.55 -9.87 16 30 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.09 1.07 8.14 -2.38 -0.02 1.06 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.18 8.08 -2.38 -0.02 1.16 16 36 H 0.06 1.15 7.60 -2.39 -0.02 1.14 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.17 4.82 7.79 -2.91 -0.02 4.80 16 40 H 0.41 15.37 6.58 -92.71 -0.61 14.76 16 41 H 0.05 2.01 7.41 -2.39 -0.02 1.99 16 42 H 0.08 2.52 8.14 -2.38 -0.02 2.51 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.05 2.46 6.19 -2.39 -0.01 2.45 16 50 H 0.00 0.15 8.14 -2.39 -0.02 0.14 16 51 H 0.25 13.22 8.31 -92.70 -0.77 12.45 16 Total: -1.00 -60.64 398.94 1.72 -58.92 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: -1.49 Total: 36.10 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 5.68 Total: 9.50 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -4.43 Total: -126.40 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.07 Total: -24.10 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -60.64 1.72 -58.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024526872.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.842 kcal (2) G-P(sol) polarization free energy of solvation -60.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds