Wall clock time and date at job start Tue Mar 31 2020 20:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 C 1.53008 * 109.46736 * 240.00586 * 2 1 3 5 5 C 1.50697 * 109.47695 * 120.00807 * 2 1 3 6 6 C 1.39677 * 126.06843 * 74.99098 * 5 2 1 7 7 C 1.38406 * 105.35711 * 180.02562 * 6 5 2 8 8 C 1.47163 * 126.88484 * 179.97438 * 7 6 5 9 9 O 1.21630 * 119.99724 * 0.27206 * 8 7 6 10 10 N 1.34772 * 119.99906 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99916 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47086 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.58616 * 299.94317 * 12 11 10 14 14 C 1.53193 * 109.58255 * 179.52258 * 12 11 10 15 15 C 1.53040 * 109.30966 * 185.57955 * 14 12 11 16 16 C 1.53042 * 109.54174 * 61.35769 * 15 14 12 17 17 C 1.53183 * 109.31567 * 298.63985 * 16 15 14 18 18 N 1.46920 * 109.58664 * 60.22847 * 12 11 10 19 19 C 1.36937 * 120.63063 * 353.41946 * 18 12 11 20 20 H 1.07991 * 120.00314 * 31.13023 * 19 18 12 21 21 C 1.38815 * 119.99473 * 211.12910 * 19 18 12 22 22 N 1.31618 * 120.00223 * 13.88892 * 21 19 18 23 23 Si 1.86800 * 119.99803 * 193.88584 * 21 19 18 24 24 H 1.48506 * 109.46910 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47427 * 119.99915 * 23 21 19 26 26 H 1.48504 * 109.47435 * 240.00478 * 23 21 19 27 27 N 1.36607 * 106.23337 * 0.22734 * 7 6 5 28 28 H 0.96993 * 125.19274 * 179.77232 * 27 7 6 29 29 N 1.28443 * 109.61447 * 359.61420 * 27 7 6 30 30 H 1.09004 * 109.46472 * 299.99529 * 1 2 3 31 31 H 1.08994 * 109.47583 * 59.99238 * 1 2 3 32 32 H 1.08999 * 109.47262 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47490 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47387 * 300.00882 * 3 2 1 35 35 H 1.09011 * 109.46569 * 60.00554 * 3 2 1 36 36 H 1.08999 * 109.46826 * 299.99754 * 4 2 1 37 37 H 1.09003 * 109.47069 * 59.99537 * 4 2 1 38 38 H 1.08999 * 109.46728 * 179.97438 * 4 2 1 39 39 H 1.07991 * 127.32341 * 0.02562 * 6 5 2 40 40 H 0.97000 * 120.00412 * 359.97438 * 10 8 7 41 41 H 1.08994 * 109.47279 * 300.00124 * 11 10 8 42 42 H 1.09007 * 109.46681 * 60.00062 * 11 10 8 43 43 H 1.08995 * 109.49440 * 305.52269 * 14 12 11 44 44 H 1.08993 * 109.50427 * 65.62627 * 14 12 11 45 45 H 1.09007 * 109.45920 * 301.33885 * 15 14 12 46 46 H 1.09001 * 109.44958 * 181.37439 * 15 14 12 47 47 H 1.08998 * 109.49871 * 178.68078 * 16 15 14 48 48 H 1.09005 * 109.49100 * 58.58865 * 16 15 14 49 49 H 1.09004 * 109.58576 * 294.84481 * 17 16 15 50 50 H 1.08997 * 109.70764 * 174.48724 * 17 16 15 51 51 H 0.97002 * 119.99404 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2303 6 6 2.0310 -2.0914 1.4407 7 6 2.5816 -2.2712 2.6977 8 6 2.8026 -3.5507 3.3904 9 8 2.4933 -4.5958 2.8506 10 7 3.3524 -3.5646 4.6208 11 6 3.5719 -4.8383 5.3107 12 6 4.2035 -4.5749 6.6791 13 1 5.1581 -4.0651 6.5489 14 6 4.4233 -5.9045 7.4077 15 6 4.9245 -5.6271 8.8268 16 6 3.8713 -4.8241 9.5938 17 6 3.6453 -3.4825 8.8900 18 7 3.3037 -3.7376 7.4840 19 6 2.1679 -3.2055 6.9343 20 1 1.6486 -3.7352 6.1495 21 6 1.6843 -1.9853 7.3859 22 7 2.4434 -1.2123 8.1332 23 14 -0.0442 -1.4403 6.9331 24 1 -0.6869 -2.4816 6.0916 25 1 -0.8412 -1.2430 8.1704 26 1 0.0213 -0.1636 6.1775 27 7 2.8735 -1.0226 3.1689 28 1 3.2692 -0.8297 4.0332 29 7 2.5470 -0.1434 2.2914 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8898 35 1 1.6767 1.9562 0.8901 36 1 1.6766 -1.7488 -1.2494 37 1 1.6765 -0.2073 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 1.6758 -2.8561 0.7660 40 1 3.6027 -2.7313 5.0497 41 1 2.6182 -5.3492 5.4426 42 1 4.2395 -5.4627 4.7168 43 1 3.4827 -6.4532 7.4549 44 1 5.1637 -6.4962 6.8696 45 1 5.8523 -5.0568 8.7793 46 1 5.1049 -6.5721 9.3392 47 1 4.2189 -4.6471 10.6117 48 1 2.9359 -5.3831 9.6204 49 1 4.5553 -2.8846 8.9422 50 1 2.8281 -2.9470 9.3732 51 1 2.1055 -0.3594 8.4484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024526873.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:35 Heat of formation + Delta-G solvation = 36.238198 kcal Electronic energy + Delta-G solvation = -30288.424576 eV Core-core repulsion = 26417.094005 eV Total energy + Delta-G solvation = -3871.330571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.35314 -39.15672 -37.73442 -36.88236 -34.35203 -33.18561 -31.32762 -30.78561 -30.16348 -29.93250 -27.30926 -27.24519 -26.17592 -24.98259 -22.91013 -22.36483 -22.13556 -20.77043 -20.27912 -19.29902 -18.60475 -18.24643 -16.55774 -15.84838 -15.47788 -15.45743 -15.35592 -14.80704 -14.34884 -14.09518 -13.97908 -13.93746 -13.58347 -13.51322 -13.35350 -13.21215 -12.92919 -12.51426 -12.30886 -12.17199 -12.14592 -11.85812 -11.65976 -11.31918 -11.26557 -11.05773 -11.05284 -11.00378 -10.87505 -10.65440 -10.40300 -10.37114 -10.22677 -10.08473 -9.76638 -9.58266 -9.42187 -8.96790 -8.89973 -8.70518 -8.37741 -6.78593 -5.97173 -3.44312 1.58587 2.75273 3.07820 3.23478 3.34580 3.38277 3.52862 3.68136 4.32009 4.48902 4.77216 5.00135 5.06749 5.13320 5.20058 5.24730 5.39021 5.41536 5.55823 5.59988 5.60172 5.63021 5.71756 5.77571 5.81485 5.87711 5.88882 5.92645 5.95580 6.05214 6.07373 6.14829 6.21348 6.29191 6.31214 6.32451 6.36856 6.51727 6.62349 6.65737 6.66997 6.76364 6.85600 6.96326 7.20548 7.29030 7.55783 7.67095 7.98520 8.25017 8.28009 8.58797 9.03724 9.65064 10.23366 11.08716 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.003620 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.822608 B = 7732.201413 C = 8829.728332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.019 3.981 3 C -0.134 4.134 4 C -0.137 4.137 5 C 0.030 3.970 6 C -0.160 4.160 7 C -0.022 4.022 8 C 0.581 3.419 9 O -0.544 6.544 10 N -0.689 5.689 11 C 0.135 3.865 12 C 0.160 3.840 13 H 0.033 0.967 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.173 3.827 18 N -0.589 5.589 19 C -0.254 4.254 20 H 0.070 0.930 21 C 0.010 3.990 22 N -0.897 5.897 23 Si 0.886 3.114 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.288 1.288 27 N -0.371 5.371 28 H 0.449 0.551 29 N -0.268 5.268 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.159 0.841 40 H 0.410 0.590 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.045 0.955 47 H 0.046 0.954 48 H 0.053 0.947 49 H 0.019 0.981 50 H 0.085 0.915 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.674 -0.069 -10.322 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.017 3.983 3 C -0.192 4.192 4 C -0.195 4.195 5 C -0.128 4.128 6 C -0.189 4.189 7 C -0.152 4.152 8 C 0.366 3.634 9 O -0.422 6.422 10 N -0.339 5.339 11 C 0.011 3.989 12 C 0.053 3.947 13 H 0.050 0.950 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.183 4.183 17 C 0.047 3.953 18 N -0.313 5.313 19 C -0.384 4.384 20 H 0.088 0.912 21 C -0.190 4.190 22 N -0.541 5.541 23 Si 0.715 3.285 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.215 1.215 27 N -0.087 5.087 28 H 0.295 0.705 29 N -0.101 5.101 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.176 0.824 40 H 0.247 0.753 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.037 0.963 50 H 0.103 0.897 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.703 0.346 -10.147 10.507 hybrid contribution -0.871 0.058 0.514 1.013 sum 1.831 0.404 -9.633 9.814 Atomic orbital electron populations 1.21874 0.93532 1.02332 1.01890 1.18855 0.95262 0.94713 0.89483 1.21761 1.01246 0.94428 1.01736 1.21869 1.01308 1.00485 0.95870 1.21814 1.03735 0.91653 0.95562 1.21861 1.05088 0.96295 0.95705 1.21879 1.09175 0.86845 0.97254 1.16981 0.78553 0.86478 0.81431 1.90774 1.52754 1.31765 1.66882 1.45917 1.61055 1.11459 1.15475 1.21368 1.00765 0.84747 0.92032 1.20745 0.93223 0.91619 0.89125 0.94986 1.21932 1.00560 0.97938 0.96257 1.21362 0.98609 0.98859 0.95677 1.22188 0.98068 1.00164 0.97926 1.20766 0.99652 0.91075 0.83762 1.44089 1.23629 1.57431 1.06166 1.19260 1.00446 0.99454 1.19195 0.91205 1.25058 0.97988 0.95657 1.00304 1.70008 1.34696 1.10871 1.38479 0.86468 0.85368 0.78533 0.78111 1.20127 1.21293 1.21513 1.43729 1.45711 1.02895 1.16376 0.70477 1.73046 1.16915 1.20162 0.99992 0.92448 0.92126 0.92206 0.92526 0.92688 0.91980 0.92099 0.92136 0.92446 0.82373 0.75262 0.91161 0.92184 0.91987 0.92927 0.92866 0.93633 0.93490 0.92803 0.96334 0.89721 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.46 37.16 0.31 -1.18 16 2 C 0.02 0.22 0.96 -155.66 -0.15 0.07 16 3 C -0.13 -1.47 8.04 37.16 0.30 -1.17 16 4 C -0.14 -1.34 8.20 37.16 0.30 -1.03 16 5 C 0.03 0.45 5.65 -82.47 -0.47 -0.01 16 6 C -0.16 -2.55 10.13 -38.98 -0.39 -2.95 16 7 C -0.02 -0.39 7.16 -82.05 -0.59 -0.98 16 8 C 0.58 11.00 7.80 -12.64 -0.10 10.90 16 9 O -0.54 -11.53 16.92 5.25 0.09 -11.44 16 10 N -0.69 -12.60 3.84 -61.46 -0.24 -12.83 16 11 C 0.13 2.41 4.43 -4.04 -0.02 2.40 16 12 C 0.16 2.92 3.01 -67.60 -0.20 2.71 16 13 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 14 C -0.13 -2.03 5.37 -26.61 -0.14 -2.17 16 15 C -0.11 -1.68 5.88 -26.69 -0.16 -1.84 16 16 C -0.14 -2.57 6.08 -26.62 -0.16 -2.74 16 17 C 0.17 3.74 5.27 -3.71 -0.02 3.72 16 18 N -0.59 -12.79 2.97 -164.78 -0.49 -13.28 16 19 C -0.25 -6.06 6.97 -15.06 -0.10 -6.17 16 20 H 0.07 1.74 5.86 -52.49 -0.31 1.43 16 21 C 0.01 0.24 4.97 -17.43 -0.09 0.15 16 22 N -0.90 -23.28 11.23 55.49 0.62 -22.66 16 23 Si 0.89 20.84 29.58 -169.99 -5.03 15.81 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 N -0.37 -6.10 6.85 33.48 0.23 -5.87 16 28 H 0.45 6.95 8.22 -190.46 -1.57 5.38 16 29 N -0.27 -4.38 11.48 33.64 0.39 -4.00 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.75 8.09 -51.92 -0.42 0.33 16 36 H 0.06 0.58 7.60 -51.93 -0.39 0.19 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.16 2.30 7.79 -52.49 -0.41 1.89 16 40 H 0.41 7.61 6.57 -40.82 -0.27 7.34 16 41 H 0.07 1.39 7.42 -51.93 -0.39 1.00 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.08 2.09 6.19 -51.93 -0.32 1.77 16 51 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 398.87 15.07 6.01 6.01 Total: -1.00 -27.91 398.87 -10.06 -37.97 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -9.97 Total: 10.56 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.67 Total: -0.28 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.51 Total: -58.64 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -27.91 -10.06 -37.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024526873.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.211 kcal (2) G-P(sol) polarization free energy of solvation -27.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds