Wall clock time and date at job start Tue Mar 31 2020 20:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 C 1.53008 * 109.46736 * 240.00586 * 2 1 3 5 5 C 1.50697 * 109.47695 * 120.00807 * 2 1 3 6 6 C 1.39677 * 126.06843 * 74.99098 * 5 2 1 7 7 C 1.38406 * 105.35711 * 180.02562 * 6 5 2 8 8 C 1.47163 * 126.88484 * 179.97438 * 7 6 5 9 9 O 1.21630 * 119.99724 * 0.27206 * 8 7 6 10 10 N 1.34772 * 119.99906 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99916 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47086 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.58616 * 299.94317 * 12 11 10 14 14 C 1.53193 * 109.58255 * 179.52258 * 12 11 10 15 15 C 1.53040 * 109.30966 * 185.57955 * 14 12 11 16 16 C 1.53042 * 109.54174 * 61.35769 * 15 14 12 17 17 C 1.53183 * 109.31567 * 298.63985 * 16 15 14 18 18 N 1.46920 * 109.58664 * 60.22847 * 12 11 10 19 19 C 1.36937 * 120.63063 * 353.41946 * 18 12 11 20 20 H 1.07991 * 120.00314 * 31.13023 * 19 18 12 21 21 C 1.38815 * 119.99473 * 211.12910 * 19 18 12 22 22 N 1.31618 * 120.00223 * 13.88892 * 21 19 18 23 23 Si 1.86800 * 119.99803 * 193.88584 * 21 19 18 24 24 H 1.48506 * 109.46910 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47427 * 119.99915 * 23 21 19 26 26 H 1.48504 * 109.47435 * 240.00478 * 23 21 19 27 27 N 1.36607 * 106.23337 * 0.22734 * 7 6 5 28 28 H 0.96993 * 125.19274 * 179.77232 * 27 7 6 29 29 N 1.28443 * 109.61447 * 359.61420 * 27 7 6 30 30 H 1.09004 * 109.46472 * 299.99529 * 1 2 3 31 31 H 1.08994 * 109.47583 * 59.99238 * 1 2 3 32 32 H 1.08999 * 109.47262 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47490 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47387 * 300.00882 * 3 2 1 35 35 H 1.09011 * 109.46569 * 60.00554 * 3 2 1 36 36 H 1.08999 * 109.46826 * 299.99754 * 4 2 1 37 37 H 1.09003 * 109.47069 * 59.99537 * 4 2 1 38 38 H 1.08999 * 109.46728 * 179.97438 * 4 2 1 39 39 H 1.07991 * 127.32341 * 0.02562 * 6 5 2 40 40 H 0.97000 * 120.00412 * 359.97438 * 10 8 7 41 41 H 1.08994 * 109.47279 * 300.00124 * 11 10 8 42 42 H 1.09007 * 109.46681 * 60.00062 * 11 10 8 43 43 H 1.08995 * 109.49440 * 305.52269 * 14 12 11 44 44 H 1.08993 * 109.50427 * 65.62627 * 14 12 11 45 45 H 1.09007 * 109.45920 * 301.33885 * 15 14 12 46 46 H 1.09001 * 109.44958 * 181.37439 * 15 14 12 47 47 H 1.08998 * 109.49871 * 178.68078 * 16 15 14 48 48 H 1.09005 * 109.49100 * 58.58865 * 16 15 14 49 49 H 1.09004 * 109.58576 * 294.84481 * 17 16 15 50 50 H 1.08997 * 109.70764 * 174.48724 * 17 16 15 51 51 H 0.97002 * 119.99404 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2303 6 6 2.0310 -2.0914 1.4407 7 6 2.5816 -2.2712 2.6977 8 6 2.8026 -3.5507 3.3904 9 8 2.4933 -4.5958 2.8506 10 7 3.3524 -3.5646 4.6208 11 6 3.5719 -4.8383 5.3107 12 6 4.2035 -4.5749 6.6791 13 1 5.1581 -4.0651 6.5489 14 6 4.4233 -5.9045 7.4077 15 6 4.9245 -5.6271 8.8268 16 6 3.8713 -4.8241 9.5938 17 6 3.6453 -3.4825 8.8900 18 7 3.3037 -3.7376 7.4840 19 6 2.1679 -3.2055 6.9343 20 1 1.6486 -3.7352 6.1495 21 6 1.6843 -1.9853 7.3859 22 7 2.4434 -1.2123 8.1332 23 14 -0.0442 -1.4403 6.9331 24 1 -0.6869 -2.4816 6.0916 25 1 -0.8412 -1.2430 8.1704 26 1 0.0213 -0.1636 6.1775 27 7 2.8735 -1.0226 3.1689 28 1 3.2692 -0.8297 4.0332 29 7 2.5470 -0.1434 2.2914 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8898 35 1 1.6767 1.9562 0.8901 36 1 1.6766 -1.7488 -1.2494 37 1 1.6765 -0.2073 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 1.6758 -2.8561 0.7660 40 1 3.6027 -2.7313 5.0497 41 1 2.6182 -5.3492 5.4426 42 1 4.2395 -5.4627 4.7168 43 1 3.4827 -6.4532 7.4549 44 1 5.1637 -6.4962 6.8696 45 1 5.8523 -5.0568 8.7793 46 1 5.1049 -6.5721 9.3392 47 1 4.2189 -4.6471 10.6117 48 1 2.9359 -5.3831 9.6204 49 1 4.5553 -2.8846 8.9422 50 1 2.8281 -2.9470 9.3732 51 1 2.1055 -0.3594 8.4484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024526873.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:33 Heat of formation + Delta-G solvation = 20.886435 kcal Electronic energy + Delta-G solvation = -30289.090278 eV Core-core repulsion = 26417.094005 eV Total energy + Delta-G solvation = -3871.996274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.62378 -40.67768 -39.28094 -37.83481 -35.85394 -34.95403 -32.78122 -32.04457 -31.79402 -31.35450 -28.21644 -28.06782 -27.71571 -26.63074 -24.25763 -23.81788 -23.45581 -22.25347 -21.64778 -20.80050 -20.02655 -19.36805 -18.28616 -17.46462 -16.98813 -16.78019 -16.72503 -16.06669 -15.91077 -15.67472 -15.29990 -14.98330 -14.91516 -14.78517 -14.64928 -14.57617 -14.37818 -14.09321 -13.67104 -13.47953 -13.08502 -12.95144 -12.94084 -12.86641 -12.63081 -12.50537 -12.37991 -12.30489 -12.09972 -12.01030 -11.88435 -11.82271 -11.54609 -11.50828 -11.27630 -11.12071 -10.98222 -10.59579 -10.30772 -10.14528 -9.90077 -8.61063 -7.90000 -5.36109 0.20832 1.30063 1.39530 1.43712 1.53808 1.79456 2.08258 2.23254 2.40707 3.24596 3.40433 3.54136 3.70443 3.83697 3.95108 4.13307 4.20681 4.22974 4.25546 4.36257 4.41276 4.46218 4.53820 4.63287 4.67633 4.74555 4.84311 4.85742 4.87119 4.95403 4.99150 5.07433 5.07708 5.13051 5.16806 5.22162 5.26492 5.27106 5.31664 5.45288 5.47027 5.48133 5.51460 5.52454 5.61652 5.70649 5.82617 5.93417 6.38509 6.48961 6.95979 7.08866 7.14122 7.83414 8.36537 9.13484 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.003620 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.822608 B = 7732.201413 C = 8829.728332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.015 3.985 3 C -0.131 4.131 4 C -0.134 4.134 5 C 0.034 3.966 6 C -0.160 4.160 7 C -0.042 4.042 8 C 0.583 3.417 9 O -0.570 6.570 10 N -0.688 5.688 11 C 0.137 3.863 12 C 0.159 3.841 13 H 0.036 0.964 14 C -0.122 4.122 15 C -0.103 4.103 16 C -0.136 4.136 17 C 0.177 3.823 18 N -0.601 5.601 19 C -0.233 4.233 20 H 0.061 0.939 21 C -0.024 4.024 22 N -0.918 5.918 23 Si 0.925 3.075 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.295 1.295 27 N -0.374 5.374 28 H 0.450 0.550 29 N -0.282 5.282 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.171 0.829 40 H 0.408 0.592 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.045 0.955 49 H 0.003 0.997 50 H 0.049 0.951 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.349 -1.011 -11.695 12.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.013 3.987 3 C -0.188 4.188 4 C -0.192 4.192 5 C -0.124 4.124 6 C -0.189 4.189 7 C -0.171 4.171 8 C 0.368 3.632 9 O -0.449 6.449 10 N -0.337 5.337 11 C 0.014 3.986 12 C 0.053 3.947 13 H 0.054 0.946 14 C -0.161 4.161 15 C -0.140 4.140 16 C -0.175 4.175 17 C 0.052 3.948 18 N -0.325 5.325 19 C -0.364 4.364 20 H 0.078 0.922 21 C -0.221 4.221 22 N -0.564 5.564 23 Si 0.756 3.244 24 H -0.209 1.209 25 H -0.220 1.220 26 H -0.222 1.222 27 N -0.090 5.090 28 H 0.296 0.704 29 N -0.115 5.115 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.189 0.811 40 H 0.245 0.755 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.021 0.979 50 H 0.067 0.933 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.392 -0.612 -11.511 12.016 hybrid contribution -1.075 0.334 0.902 1.443 sum 2.317 -0.277 -10.609 10.862 Atomic orbital electron populations 1.21875 0.92738 1.02414 1.02417 1.19090 0.95851 0.95012 0.88763 1.21739 1.00830 0.94031 1.02231 1.21857 1.01022 1.00631 0.95646 1.22444 1.02401 0.91485 0.96076 1.22143 1.04312 0.97160 0.95279 1.21818 1.10654 0.86595 0.97997 1.17133 0.77943 0.86715 0.81363 1.90748 1.53950 1.32744 1.67479 1.45928 1.60794 1.11555 1.15385 1.21392 1.00223 0.84681 0.92309 1.20915 0.92382 0.92340 0.89014 0.94596 1.21892 1.01257 0.96411 0.96585 1.21347 0.97678 0.99806 0.95198 1.22051 0.98747 0.97931 0.98770 1.20591 0.97435 0.92837 0.83963 1.44257 1.23793 1.57686 1.06803 1.19213 1.00762 0.98596 1.17818 0.92184 1.25337 0.99327 0.96214 1.01251 1.70085 1.35295 1.11003 1.39981 0.85871 0.83807 0.77583 0.77169 1.20938 1.21965 1.22241 1.43726 1.46020 1.02638 1.16570 0.70420 1.73065 1.17493 1.20424 1.00521 0.94139 0.89392 0.92366 0.93145 0.90052 0.93613 0.91984 0.89656 0.92912 0.81135 0.75489 0.93070 0.90011 0.92706 0.89767 0.92363 0.90777 0.91831 0.93645 0.97871 0.93256 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.46 71.98 0.61 -2.08 16 2 C 0.01 0.32 0.96 -52.93 -0.05 0.27 16 3 C -0.13 -2.65 8.04 71.98 0.58 -2.07 16 4 C -0.13 -2.27 8.20 71.98 0.59 -1.68 16 5 C 0.03 1.00 5.65 43.05 0.24 1.24 16 6 C -0.16 -5.00 10.13 22.66 0.23 -4.77 16 7 C -0.04 -1.46 7.16 40.79 0.29 -1.17 16 8 C 0.58 22.15 7.80 86.59 0.68 22.82 16 9 O -0.57 -24.07 16.92 -4.13 -0.07 -24.14 16 10 N -0.69 -25.17 3.84 -466.62 -1.79 -26.96 16 11 C 0.14 4.81 4.43 86.38 0.38 5.19 16 12 C 0.16 5.60 3.01 44.98 0.14 5.73 16 13 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 14 C -0.12 -3.55 5.37 30.67 0.16 -3.38 16 15 C -0.10 -2.89 5.88 30.62 0.18 -2.71 16 16 C -0.14 -4.64 6.08 30.67 0.19 -4.45 16 17 C 0.18 7.68 5.27 86.36 0.46 8.14 16 18 N -0.60 -26.04 2.97 -675.25 -2.01 -28.05 16 19 C -0.23 -11.26 6.97 84.03 0.59 -10.68 16 20 H 0.06 3.03 5.86 -2.92 -0.02 3.02 16 21 C -0.02 -1.23 4.97 84.86 0.42 -0.81 16 22 N -0.92 -48.88 11.23 21.65 0.24 -48.63 16 23 Si 0.92 43.89 29.58 68.60 2.03 45.92 16 24 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 27 N -0.37 -12.48 6.85 -47.99 -0.33 -12.80 16 28 H 0.45 14.38 8.22 -220.01 -1.81 12.57 16 29 N -0.28 -9.25 11.48 -47.49 -0.55 -9.79 16 30 H 0.04 0.92 8.14 -2.38 -0.02 0.91 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.04 1.06 8.09 -2.38 -0.02 1.05 16 36 H 0.06 1.04 7.60 -2.39 -0.02 1.02 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.17 4.80 7.79 -2.92 -0.02 4.78 16 40 H 0.41 15.34 6.57 -92.71 -0.61 14.73 16 41 H 0.05 2.00 7.42 -2.39 -0.02 1.98 16 42 H 0.08 2.52 8.14 -2.38 -0.02 2.51 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 49 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 50 H 0.05 2.49 6.19 -2.39 -0.01 2.47 16 51 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 Total: -1.00 -60.63 398.87 1.72 -58.91 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -1.49 Total: 35.95 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.68 Total: 9.59 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -4.43 Total: -126.23 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.07 Total: -24.14 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -60.63 1.72 -58.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024526873.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.800 kcal (2) G-P(sol) polarization free energy of solvation -60.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds