Wall clock time and date at job start Tue Mar 31 2020 19:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46920 * 2 1 4 4 C 1.50702 * 109.47112 * 120.00091 * 2 1 3 5 5 C 1.39670 * 126.06613 * 275.00118 * 4 2 1 6 6 C 1.38406 * 105.35519 * 179.97438 * 5 4 2 7 7 C 1.47163 * 126.88036 * 179.97438 * 6 5 4 8 8 O 1.21632 * 119.99565 * 174.48199 * 7 6 5 9 9 N 1.34772 * 120.00363 * 354.47886 * 7 6 5 10 10 C 1.46506 * 120.00258 * 185.26139 * 9 7 6 11 11 C 1.52996 * 109.47198 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.58459 * 299.91769 * 11 10 9 13 13 C 1.53187 * 109.58508 * 179.49093 * 11 10 9 14 14 C 1.53040 * 109.31322 * 185.57868 * 13 11 10 15 15 C 1.53038 * 109.54124 * 61.36016 * 14 13 11 16 16 C 1.53192 * 109.31251 * 298.64098 * 15 14 13 17 17 N 1.46925 * 109.58549 * 60.20062 * 11 10 9 18 18 C 1.36937 * 120.63091 * 353.41460 * 17 11 10 19 19 H 1.08000 * 119.99984 * 32.77905 * 18 17 11 20 20 C 1.38808 * 119.99732 * 212.77360 * 18 17 11 21 21 N 1.31614 * 120.00535 * 11.53438 * 20 18 17 22 22 Si 1.86810 * 119.99994 * 191.52898 * 20 18 17 23 23 H 1.48496 * 109.46791 * 90.00045 * 22 20 18 24 24 H 1.48499 * 109.47230 * 210.00466 * 22 20 18 25 25 H 1.48504 * 109.46561 * 330.00543 * 22 20 18 26 26 N 1.36597 * 106.23405 * 359.97438 * 6 5 4 27 27 C 1.46501 * 125.18932 * 179.97438 * 26 6 5 28 28 N 1.28442 * 109.61760 * 359.76705 * 26 6 5 29 29 H 1.09004 * 109.47614 * 60.00239 * 1 2 3 30 30 H 1.08996 * 109.47711 * 299.99720 * 1 2 3 31 31 H 1.08997 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47042 * 240.00549 * 2 1 3 33 33 H 1.09004 * 109.46940 * 59.99912 * 3 2 1 34 34 H 1.08994 * 109.47068 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47240 * 300.00420 * 3 2 1 36 36 H 1.07999 * 127.32607 * 359.94290 * 5 4 2 37 37 H 0.97002 * 120.00153 * 5.26608 * 9 7 6 38 38 H 1.09002 * 109.47253 * 300.00605 * 10 9 7 39 39 H 1.09000 * 109.46759 * 60.00050 * 10 9 7 40 40 H 1.09000 * 109.49745 * 305.52372 * 13 11 10 41 41 H 1.08997 * 109.50055 * 65.62849 * 13 11 10 42 42 H 1.09007 * 109.45853 * 301.34543 * 14 13 11 43 43 H 1.08999 * 109.45603 * 181.37722 * 14 13 11 44 44 H 1.09000 * 109.50233 * 178.68286 * 15 14 13 45 45 H 1.09003 * 109.49450 * 58.58770 * 15 14 13 46 46 H 1.09000 * 109.58565 * 294.84076 * 16 15 14 47 47 H 1.09008 * 109.70282 * 174.48910 * 16 15 14 48 48 H 0.97004 * 120.00667 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.46533 * 91.91920 * 27 26 6 50 50 H 1.09001 * 109.46675 * 211.91427 * 27 26 6 51 51 H 1.08998 * 109.47322 * 331.91529 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2136 -0.1405 2.4926 6 6 2.6848 -1.1661 3.2937 7 6 3.0344 -1.0827 4.7208 8 8 3.3431 -2.0886 5.3310 9 7 3.0126 0.1081 5.3515 10 6 3.4706 0.2105 6.7394 11 6 3.3421 1.6595 7.2133 12 1 3.9529 2.3057 6.5828 13 6 3.8085 1.7671 8.6684 14 6 3.5479 3.1858 9.1799 15 6 2.0468 3.4800 9.1307 16 6 1.5605 3.3917 7.6807 17 7 1.9366 2.0806 7.1347 18 6 0.9952 1.2663 6.5638 19 1 1.0891 0.1934 6.6441 20 6 -0.0797 1.8200 5.8821 21 7 -0.0815 3.1025 5.5864 22 14 -1.5238 0.7447 5.3840 23 1 -2.5354 0.7399 6.4711 24 1 -2.1350 1.2811 4.1414 25 1 -1.0488 -0.6416 5.1436 26 7 2.7603 -2.2711 2.4942 27 6 3.2128 -3.5960 2.9258 28 7 2.3700 -1.9723 1.3076 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.6765 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6765 1.9564 -0.8899 36 1 2.0264 0.8831 2.7819 37 1 2.6935 0.8974 4.8867 38 1 2.8601 -0.4339 7.3720 39 1 4.5131 -0.1015 6.8018 40 1 3.2579 1.0529 9.2807 41 1 4.8751 1.5501 8.7256 42 1 4.0789 3.9014 8.5520 43 1 3.9013 3.2720 10.2073 44 1 1.8596 4.4819 9.5169 45 1 1.5129 2.7496 9.7386 46 1 2.0264 4.1807 7.0903 47 1 0.4766 3.5034 7.6492 48 1 -0.8329 3.4895 5.1103 49 1 2.3551 -4.1842 3.2521 50 1 3.7043 -4.1007 2.0940 51 1 3.9155 -3.4887 3.7521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024740523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:45 Heat of formation + Delta-G solvation = 46.577389 kcal Electronic energy + Delta-G solvation = -30762.219384 eV Core-core repulsion = 26891.337154 eV Total energy + Delta-G solvation = -3870.882230 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.28646 -39.07823 -37.66979 -35.80699 -34.29258 -33.10176 -32.20280 -31.31704 -30.12205 -29.87218 -27.06435 -26.57966 -26.09018 -24.89103 -22.96553 -22.22815 -21.97346 -20.73431 -19.99213 -19.24617 -18.85535 -17.50807 -16.37275 -16.08822 -15.80107 -15.54208 -15.21222 -14.43521 -14.19325 -14.07162 -14.01366 -13.71206 -13.62694 -13.46550 -13.27337 -13.07732 -12.87996 -12.48705 -12.37950 -12.31006 -12.07526 -11.93229 -11.79058 -11.28760 -11.25044 -11.06736 -10.99940 -10.94836 -10.81857 -10.59460 -10.31904 -10.30665 -10.16132 -10.01917 -9.69128 -9.51739 -9.36826 -8.86990 -8.61035 -8.60125 -8.26566 -6.67010 -5.87437 -3.36451 1.62713 2.65038 2.80702 3.32025 3.40092 3.44032 3.65362 3.77395 4.40957 4.55243 4.91472 5.10962 5.14160 5.21479 5.28518 5.29273 5.30703 5.46439 5.52417 5.55306 5.61137 5.65383 5.67332 5.76716 5.81228 5.90283 5.93226 6.00395 6.00802 6.09089 6.10533 6.17039 6.25463 6.33292 6.37591 6.38012 6.48702 6.56217 6.67974 6.70751 6.77807 6.82816 6.92808 6.99294 7.06913 7.35564 7.63012 7.76223 8.08838 8.34422 8.38382 8.68940 9.13511 9.73672 10.32616 11.18785 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011169 B = 0.004554 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.409634 B = 6146.885041 C = 7281.076694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.005 4.005 3 C -0.145 4.145 4 C 0.028 3.972 5 C -0.175 4.175 6 C -0.027 4.027 7 C 0.583 3.417 8 O -0.567 6.567 9 N -0.673 5.673 10 C 0.136 3.864 11 C 0.160 3.840 12 H 0.033 0.967 13 C -0.127 4.127 14 C -0.107 4.107 15 C -0.145 4.145 16 C 0.174 3.826 17 N -0.588 5.588 18 C -0.254 4.254 19 H 0.068 0.932 20 C 0.015 3.985 21 N -0.896 5.896 22 Si 0.888 3.112 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.279 1.279 26 N -0.265 5.265 27 C 0.090 3.910 28 N -0.286 5.286 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.163 0.837 37 H 0.419 0.581 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.019 0.981 47 H 0.084 0.916 48 H 0.255 0.745 49 H 0.080 0.920 50 H 0.086 0.914 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.592 -3.271 -5.145 8.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 C -0.203 4.203 4 C -0.128 4.128 5 C -0.203 4.203 6 C -0.155 4.155 7 C 0.367 3.633 8 O -0.448 6.448 9 N -0.323 5.323 10 C 0.012 3.988 11 C 0.053 3.947 12 H 0.051 0.949 13 C -0.167 4.167 14 C -0.145 4.145 15 C -0.184 4.184 16 C 0.049 3.951 17 N -0.312 5.312 18 C -0.384 4.384 19 H 0.086 0.914 20 C -0.185 4.185 21 N -0.540 5.540 22 Si 0.718 3.282 23 H -0.215 1.215 24 H -0.214 1.214 25 H -0.204 1.204 26 N -0.052 5.052 27 C -0.050 4.050 28 N -0.118 5.118 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.181 0.819 37 H 0.258 0.742 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.037 0.963 47 H 0.102 0.898 48 H 0.065 0.935 49 H 0.098 0.902 50 H 0.105 0.895 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.844 -4.998 -5.369 10.032 hybrid contribution -1.217 0.486 0.143 1.318 sum 5.627 -4.512 -5.226 8.907 Atomic orbital electron populations 1.21835 0.94158 1.01966 1.02253 1.19365 0.95503 0.94970 0.92718 1.21838 1.01160 0.94753 1.02519 1.21873 1.04524 0.90048 0.96391 1.22193 1.05510 1.00137 0.92495 1.21490 1.11019 0.88683 0.94298 1.16873 0.78131 0.84298 0.83950 1.90704 1.51527 1.35208 1.67363 1.45724 1.62505 1.10085 1.14035 1.21355 0.97779 0.97926 0.81720 1.20740 0.88414 0.92058 0.93484 0.94931 1.21934 0.99281 0.97393 0.98060 1.21358 0.97420 0.96591 0.99108 1.22200 0.95230 0.99413 1.01539 1.20756 1.00734 0.86142 0.87505 1.44047 1.01069 1.18114 1.67966 1.19159 1.02358 0.89751 1.27087 0.91445 1.25070 0.99836 0.95891 0.97701 1.69977 1.30949 1.10872 1.42184 0.86494 0.83351 0.80402 0.77933 1.21453 1.21417 1.20394 1.45420 1.45175 1.09431 1.05144 1.22245 1.01794 0.79027 1.01919 1.73015 1.17748 1.17735 1.03347 0.92190 0.91993 0.92767 0.90246 0.91592 0.92503 0.92183 0.81920 0.74232 0.91245 0.92430 0.92064 0.93028 0.92854 0.93729 0.93552 0.92865 0.96316 0.89783 0.93525 0.90190 0.89485 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.17 37.16 0.34 -1.51 16 2 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 3 C -0.14 -1.70 8.79 37.16 0.33 -1.37 16 4 C 0.03 0.46 6.13 -82.47 -0.51 -0.04 16 5 C -0.17 -3.04 9.65 -38.99 -0.38 -3.42 16 6 C -0.03 -0.49 6.96 -82.06 -0.57 -1.06 16 7 C 0.58 11.30 7.78 -12.64 -0.10 11.20 16 8 O -0.57 -11.68 14.73 5.25 0.08 -11.60 16 9 N -0.67 -12.80 3.86 -61.47 -0.24 -13.04 16 10 C 0.14 2.48 4.44 -4.04 -0.02 2.46 16 11 C 0.16 2.97 3.01 -67.60 -0.20 2.76 16 12 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 13 C -0.13 -2.04 5.37 -26.61 -0.14 -2.19 16 14 C -0.11 -1.69 5.88 -26.69 -0.16 -1.85 16 15 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 16 C 0.17 3.80 5.25 -3.71 -0.02 3.78 16 17 N -0.59 -12.96 2.97 -164.78 -0.49 -13.45 16 18 C -0.25 -6.18 6.90 -15.06 -0.10 -6.28 16 19 H 0.07 1.72 5.94 -52.49 -0.31 1.41 16 20 C 0.01 0.38 5.02 -17.43 -0.09 0.29 16 21 N -0.90 -23.50 11.21 55.49 0.62 -22.88 16 22 Si 0.89 21.11 29.57 -169.99 -5.03 16.09 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 N -0.26 -4.48 3.75 -63.88 -0.24 -4.72 16 27 C 0.09 1.20 10.82 59.85 0.65 1.85 16 28 N -0.29 -4.85 11.90 33.64 0.40 -4.45 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.84 7.37 -51.93 -0.38 0.46 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.16 2.79 7.05 -52.49 -0.37 2.42 16 37 H 0.42 8.30 6.43 -40.82 -0.26 8.04 16 38 H 0.07 1.39 7.41 -51.93 -0.38 1.00 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 2.09 6.24 -51.92 -0.32 1.76 16 48 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 49 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 51 H 0.11 1.50 6.33 -51.93 -0.33 1.18 16 LS Contribution 397.43 15.07 5.99 5.99 Total: -1.00 -28.36 397.43 -9.03 -37.38 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -8.69 Total: 9.20 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.44 Total: 1.47 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.06 Total: -58.53 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.36 -9.03 -37.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024740523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.962 kcal (2) G-P(sol) polarization free energy of solvation -28.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds