Wall clock time and date at job start Tue Mar 31 2020 19:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46920 * 2 1 4 4 C 1.50702 * 109.47112 * 120.00091 * 2 1 3 5 5 C 1.39670 * 126.06613 * 275.00118 * 4 2 1 6 6 C 1.38406 * 105.35519 * 179.97438 * 5 4 2 7 7 C 1.47163 * 126.88036 * 179.97438 * 6 5 4 8 8 O 1.21632 * 119.99565 * 174.48199 * 7 6 5 9 9 N 1.34772 * 120.00363 * 354.47886 * 7 6 5 10 10 C 1.46506 * 120.00258 * 185.26139 * 9 7 6 11 11 C 1.52996 * 109.47198 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.58459 * 299.91769 * 11 10 9 13 13 C 1.53187 * 109.58508 * 179.49093 * 11 10 9 14 14 C 1.53040 * 109.31322 * 185.57868 * 13 11 10 15 15 C 1.53038 * 109.54124 * 61.36016 * 14 13 11 16 16 C 1.53192 * 109.31251 * 298.64098 * 15 14 13 17 17 N 1.46925 * 109.58549 * 60.20062 * 11 10 9 18 18 C 1.36937 * 120.63091 * 353.41460 * 17 11 10 19 19 H 1.08000 * 119.99984 * 32.77905 * 18 17 11 20 20 C 1.38808 * 119.99732 * 212.77360 * 18 17 11 21 21 N 1.31614 * 120.00535 * 11.53438 * 20 18 17 22 22 Si 1.86810 * 119.99994 * 191.52898 * 20 18 17 23 23 H 1.48496 * 109.46791 * 90.00045 * 22 20 18 24 24 H 1.48499 * 109.47230 * 210.00466 * 22 20 18 25 25 H 1.48504 * 109.46561 * 330.00543 * 22 20 18 26 26 N 1.36597 * 106.23405 * 359.97438 * 6 5 4 27 27 C 1.46501 * 125.18932 * 179.97438 * 26 6 5 28 28 N 1.28442 * 109.61760 * 359.76705 * 26 6 5 29 29 H 1.09004 * 109.47614 * 60.00239 * 1 2 3 30 30 H 1.08996 * 109.47711 * 299.99720 * 1 2 3 31 31 H 1.08997 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47042 * 240.00549 * 2 1 3 33 33 H 1.09004 * 109.46940 * 59.99912 * 3 2 1 34 34 H 1.08994 * 109.47068 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47240 * 300.00420 * 3 2 1 36 36 H 1.07999 * 127.32607 * 359.94290 * 5 4 2 37 37 H 0.97002 * 120.00153 * 5.26608 * 9 7 6 38 38 H 1.09002 * 109.47253 * 300.00605 * 10 9 7 39 39 H 1.09000 * 109.46759 * 60.00050 * 10 9 7 40 40 H 1.09000 * 109.49745 * 305.52372 * 13 11 10 41 41 H 1.08997 * 109.50055 * 65.62849 * 13 11 10 42 42 H 1.09007 * 109.45853 * 301.34543 * 14 13 11 43 43 H 1.08999 * 109.45603 * 181.37722 * 14 13 11 44 44 H 1.09000 * 109.50233 * 178.68286 * 15 14 13 45 45 H 1.09003 * 109.49450 * 58.58770 * 15 14 13 46 46 H 1.09000 * 109.58565 * 294.84076 * 16 15 14 47 47 H 1.09008 * 109.70282 * 174.48910 * 16 15 14 48 48 H 0.97004 * 120.00667 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.46533 * 91.91920 * 27 26 6 50 50 H 1.09001 * 109.46675 * 211.91427 * 27 26 6 51 51 H 1.08998 * 109.47322 * 331.91529 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2136 -0.1405 2.4926 6 6 2.6848 -1.1661 3.2937 7 6 3.0344 -1.0827 4.7208 8 8 3.3431 -2.0886 5.3310 9 7 3.0126 0.1081 5.3515 10 6 3.4706 0.2105 6.7394 11 6 3.3421 1.6595 7.2133 12 1 3.9529 2.3057 6.5828 13 6 3.8085 1.7671 8.6684 14 6 3.5479 3.1858 9.1799 15 6 2.0468 3.4800 9.1307 16 6 1.5605 3.3917 7.6807 17 7 1.9366 2.0806 7.1347 18 6 0.9952 1.2663 6.5638 19 1 1.0891 0.1934 6.6441 20 6 -0.0797 1.8200 5.8821 21 7 -0.0815 3.1025 5.5864 22 14 -1.5238 0.7447 5.3840 23 1 -2.5354 0.7399 6.4711 24 1 -2.1350 1.2811 4.1414 25 1 -1.0488 -0.6416 5.1436 26 7 2.7603 -2.2711 2.4942 27 6 3.2128 -3.5960 2.9258 28 7 2.3700 -1.9723 1.3076 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.6765 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6765 1.9564 -0.8899 36 1 2.0264 0.8831 2.7819 37 1 2.6935 0.8974 4.8867 38 1 2.8601 -0.4339 7.3720 39 1 4.5131 -0.1015 6.8018 40 1 3.2579 1.0529 9.2807 41 1 4.8751 1.5501 8.7256 42 1 4.0789 3.9014 8.5520 43 1 3.9013 3.2720 10.2073 44 1 1.8596 4.4819 9.5169 45 1 1.5129 2.7496 9.7386 46 1 2.0264 4.1807 7.0903 47 1 0.4766 3.5034 7.6492 48 1 -0.8329 3.4895 5.1103 49 1 2.3551 -4.1842 3.2521 50 1 3.7043 -4.1007 2.0940 51 1 3.9155 -3.4887 3.7521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024740523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:43 Heat of formation + Delta-G solvation = 31.454382 kcal Electronic energy + Delta-G solvation = -30762.875167 eV Core-core repulsion = 26891.337154 eV Total energy + Delta-G solvation = -3871.538013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.60111 -40.61918 -39.23029 -36.91725 -35.79325 -34.88815 -33.41300 -32.75121 -31.77900 -31.39039 -28.10738 -27.75033 -27.63315 -26.56779 -24.33470 -23.78766 -23.29216 -22.21092 -21.37485 -20.72566 -20.24090 -18.92849 -18.07550 -17.49048 -17.24322 -17.13225 -16.58299 -16.07862 -15.79191 -15.48077 -15.26657 -15.11325 -14.95894 -14.84572 -14.56549 -14.49177 -14.21890 -14.04540 -13.65225 -13.49177 -13.46503 -13.34222 -12.93165 -12.87495 -12.81653 -12.57734 -12.33775 -12.32836 -12.19164 -12.04300 -12.04201 -11.78037 -11.50835 -11.50257 -11.25001 -11.07484 -10.93916 -10.52141 -10.27210 -9.88411 -9.81253 -8.51431 -7.82507 -5.30662 0.20865 1.36618 1.39918 1.43345 1.47302 1.50475 2.16203 2.34856 2.47839 3.32702 3.36633 3.56185 3.64765 3.90816 4.00588 4.11534 4.24947 4.25282 4.28628 4.29195 4.32449 4.44965 4.45746 4.55027 4.56866 4.61451 4.66145 4.70787 4.78241 4.83165 4.89659 4.99730 5.02725 5.04172 5.14546 5.16813 5.25093 5.30848 5.37199 5.37817 5.44769 5.48898 5.49785 5.56583 5.66309 5.73745 5.76708 5.87550 6.46333 6.54692 7.00383 7.14626 7.22019 7.89662 8.43461 9.21146 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011169 B = 0.004554 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.409634 B = 6146.885041 C = 7281.076694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.005 4.005 3 C -0.141 4.141 4 C 0.026 3.974 5 C -0.181 4.181 6 C -0.048 4.048 7 C 0.582 3.418 8 O -0.582 6.582 9 N -0.675 5.675 10 C 0.140 3.860 11 C 0.159 3.841 12 H 0.036 0.964 13 C -0.121 4.121 14 C -0.102 4.102 15 C -0.136 4.136 16 C 0.179 3.821 17 N -0.600 5.600 18 C -0.235 4.235 19 H 0.056 0.944 20 C -0.020 4.020 21 N -0.916 5.916 22 Si 0.927 3.073 23 H -0.293 1.293 24 H -0.289 1.289 25 H -0.290 1.290 26 N -0.266 5.266 27 C 0.085 3.915 28 N -0.289 5.289 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.159 0.841 37 H 0.414 0.586 38 H 0.050 0.950 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.003 0.997 47 H 0.048 0.952 48 H 0.249 0.751 49 H 0.086 0.914 50 H 0.116 0.884 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.069 -3.434 -5.333 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 C -0.199 4.199 4 C -0.131 4.131 5 C -0.211 4.211 6 C -0.177 4.177 7 C 0.368 3.632 8 O -0.465 6.465 9 N -0.324 5.324 10 C 0.016 3.984 11 C 0.053 3.947 12 H 0.053 0.947 13 C -0.161 4.161 14 C -0.140 4.140 15 C -0.175 4.175 16 C 0.053 3.947 17 N -0.325 5.325 18 C -0.366 4.366 19 H 0.074 0.926 20 C -0.217 4.217 21 N -0.562 5.562 22 Si 0.758 3.242 23 H -0.220 1.220 24 H -0.215 1.215 25 H -0.216 1.216 26 N -0.054 5.054 27 C -0.054 4.054 28 N -0.123 5.123 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.176 0.824 37 H 0.252 0.748 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.021 0.979 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.105 0.895 50 H 0.135 0.865 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.339 -5.173 -5.538 11.268 hybrid contribution -1.641 0.495 0.206 1.726 sum 6.698 -4.678 -5.332 9.756 Atomic orbital electron populations 1.21820 0.93960 1.01642 1.02506 1.19524 0.95573 0.95544 0.91862 1.21814 1.01279 0.93880 1.02880 1.22389 1.03813 0.89844 0.97024 1.22263 1.05626 0.99963 0.93200 1.21465 1.12337 0.89819 0.94059 1.17020 0.77746 0.84053 0.84422 1.90683 1.52353 1.35536 1.67883 1.45752 1.62473 1.09841 1.14331 1.21384 0.98656 0.97401 0.80923 1.20913 0.86252 0.91963 0.95542 0.94659 1.21887 1.01066 0.97602 0.95510 1.21343 0.95387 0.96274 1.00997 1.22058 0.96986 1.00270 0.98199 1.20575 0.98545 0.85614 0.89937 1.44210 1.02448 1.17848 1.67946 1.19096 1.02493 0.89433 1.25559 0.92618 1.25372 1.01217 0.96374 0.98776 1.70056 1.31103 1.11499 1.43512 0.85904 0.82046 0.78862 0.77372 1.22024 1.21536 1.21640 1.45762 1.44676 1.10056 1.04865 1.22472 1.02133 0.77832 1.02982 1.73021 1.17872 1.18019 1.03344 0.89466 0.94180 0.93372 0.88591 0.93236 0.92296 0.89796 0.82375 0.74816 0.93190 0.90048 0.92774 0.89800 0.92346 0.90818 0.91843 0.93718 0.97883 0.93329 0.94116 0.89544 0.86542 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.17 71.98 0.66 -2.81 16 2 C 0.00 -0.12 3.38 -11.54 -0.04 -0.16 16 3 C -0.14 -3.12 8.79 71.98 0.63 -2.49 16 4 C 0.03 0.82 6.13 43.05 0.26 1.08 16 5 C -0.18 -6.40 9.65 22.66 0.22 -6.18 16 6 C -0.05 -1.79 6.96 40.79 0.28 -1.50 16 7 C 0.58 22.72 7.78 86.59 0.67 23.40 16 8 O -0.58 -23.98 14.73 -4.13 -0.06 -24.04 16 9 N -0.67 -25.82 3.86 -466.62 -1.80 -27.63 16 10 C 0.14 4.99 4.44 86.38 0.38 5.37 16 11 C 0.16 5.71 3.01 44.97 0.14 5.84 16 12 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 13 C -0.12 -3.56 5.37 30.67 0.16 -3.40 16 14 C -0.10 -2.91 5.88 30.62 0.18 -2.73 16 15 C -0.14 -4.68 6.08 30.67 0.19 -4.50 16 16 C 0.18 7.84 5.25 86.36 0.45 8.30 16 17 N -0.60 -26.49 2.97 -675.23 -2.00 -28.50 16 18 C -0.24 -11.63 6.90 84.03 0.58 -11.05 16 19 H 0.06 2.90 5.94 -2.91 -0.02 2.88 16 20 C -0.02 -1.04 5.02 84.86 0.43 -0.61 16 21 N -0.92 -49.32 11.21 21.65 0.24 -49.07 16 22 Si 0.93 44.53 29.57 68.60 2.03 46.56 16 23 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 26 N -0.27 -8.87 3.75 -356.02 -1.33 -10.20 16 27 C 0.08 2.16 10.82 127.77 1.38 3.55 16 28 N -0.29 -9.56 11.90 -47.49 -0.57 -10.13 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.25 7.37 -2.38 -0.02 1.24 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.16 5.62 7.05 -2.91 -0.02 5.60 16 37 H 0.41 16.73 6.43 -92.71 -0.60 16.14 16 38 H 0.05 1.99 7.41 -2.39 -0.02 1.97 16 39 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 42 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.05 2.47 6.24 -2.38 -0.01 2.46 16 48 H 0.25 13.30 8.31 -92.71 -0.77 12.52 16 49 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.10 2.79 6.33 -2.39 -0.02 2.77 16 Total: -1.00 -61.63 397.43 3.41 -58.22 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.32 Total: 32.69 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 6.59 Total: 12.11 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -5.46 Total: -125.53 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -61.63 3.41 -58.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024740523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.671 kcal (2) G-P(sol) polarization free energy of solvation -61.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds