Wall clock time and date at job start Tue Mar 31 2020 20:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46855 * 2 1 4 4 C 1.53002 * 109.47429 * 240.00241 * 2 1 3 5 5 C 1.50693 * 109.47175 * 119.99541 * 2 1 3 6 6 N 1.30452 * 125.98938 * 241.87698 * 5 2 1 7 7 N 1.39940 * 108.89710 * 180.02562 * 6 5 2 8 8 H 0.97004 * 125.75226 * 179.97438 * 7 6 5 9 9 C 1.34257 * 108.49098 * 359.75904 * 7 6 5 10 10 C 1.38042 * 107.41665 * 0.38731 * 9 7 6 11 11 C 1.47435 * 126.41416 * 179.87688 * 10 9 7 12 12 O 1.21603 * 119.99780 * 174.99115 * 11 10 9 13 13 N 1.34777 * 120.00262 * 354.98354 * 11 10 9 14 14 C 1.46494 * 120.00209 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46915 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.69994 * 62.67131 * 15 14 13 17 17 C 1.53623 * 109.66049 * 183.26101 * 15 14 13 18 18 C 1.53040 * 109.24106 * 174.55080 * 17 15 14 19 19 C 1.53045 * 109.53618 * 298.50902 * 18 17 15 20 20 C 1.53194 * 109.30846 * 61.36561 * 19 18 17 21 21 N 1.46916 * 108.77549 * 305.36293 * 20 19 18 22 22 C 1.36939 * 120.63234 * 233.58772 * 21 20 19 23 23 H 1.08002 * 120.00618 * 146.01394 * 22 21 20 24 24 C 1.38817 * 119.99728 * 326.29064 * 22 21 20 25 25 N 1.31613 * 120.00412 * 348.13454 * 24 22 21 26 26 Si 1.86805 * 119.99857 * 168.12869 * 24 22 21 27 27 H 1.48507 * 109.46904 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.46883 * 120.00282 * 26 24 22 29 29 H 1.48498 * 109.47373 * 240.00096 * 26 24 22 30 30 H 1.08997 * 109.47612 * 310.62753 * 1 2 3 31 31 H 1.09005 * 109.47311 * 70.63261 * 1 2 3 32 32 H 1.09001 * 109.46653 * 190.62256 * 1 2 3 33 33 H 1.08998 * 109.47384 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47240 * 299.99918 * 3 2 1 35 35 H 1.09001 * 109.47287 * 59.99224 * 3 2 1 36 36 H 1.09003 * 109.46433 * 305.90920 * 4 2 1 37 37 H 1.08990 * 109.47166 * 65.90928 * 4 2 1 38 38 H 1.08999 * 109.46680 * 185.91197 * 4 2 1 39 39 H 1.08005 * 126.29325 * 180.24150 * 9 7 6 40 40 H 0.97006 * 119.99591 * 0.02562 * 13 11 10 41 41 H 1.08997 * 109.47234 * 60.00097 * 14 13 11 42 42 H 1.09003 * 109.46923 * 300.00098 * 14 13 11 43 43 H 1.08998 * 109.63779 * 54.55972 * 17 15 14 44 44 H 1.08999 * 109.45941 * 294.42925 * 17 15 14 45 45 H 1.09004 * 109.46197 * 178.49106 * 18 17 15 46 46 H 1.09005 * 109.45319 * 58.52200 * 18 17 15 47 47 H 1.08992 * 109.49783 * 301.41417 * 19 18 17 48 48 H 1.09005 * 109.52294 * 181.33362 * 19 18 17 49 49 H 1.09004 * 109.58293 * 185.57404 * 20 19 18 50 50 H 1.08997 * 109.70422 * 65.22946 * 20 19 18 51 51 H 0.96992 * 120.00384 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0323 -0.7103 1.2305 6 7 2.7569 -0.1825 2.1781 7 7 3.0205 -1.1595 3.1447 8 1 3.5390 -1.0305 3.9543 9 6 2.4308 -2.3043 2.7647 10 6 1.8017 -2.0648 1.5596 11 6 1.0284 -3.0385 0.7673 12 8 0.4447 -2.6784 -0.2369 13 7 0.9685 -4.3276 1.1560 14 6 0.2006 -5.2952 0.3684 15 6 0.2953 -6.6750 1.0227 16 1 -0.1516 -6.6420 2.0164 17 6 -0.4404 -7.7091 0.1570 18 6 -0.2252 -9.1049 0.7466 19 6 1.2678 -9.4413 0.7339 20 6 2.0226 -8.4286 1.6007 21 7 1.7053 -7.0736 1.1297 22 6 2.7050 -6.1969 0.8022 23 1 2.5600 -5.4875 0.0008 24 6 3.9068 -6.2238 1.4964 25 7 4.0085 -6.9188 2.6094 26 14 5.3798 -5.2736 0.8507 27 1 5.0076 -4.5789 -0.4080 28 1 5.8045 -4.2721 1.8615 29 1 6.4980 -6.2141 0.5855 30 1 -0.3634 0.6691 0.7799 31 1 -0.3634 0.3408 -0.9695 32 1 -0.3633 -1.0101 0.1894 33 1 3.1299 1.4427 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6765 1.9565 0.8899 36 1 1.5929 -1.7138 -1.3037 37 1 1.7657 -0.1499 -2.1360 38 1 3.1249 -0.8137 -1.1978 39 1 2.4477 -3.2411 3.3020 40 1 1.4339 -4.6147 1.9572 41 1 0.6051 -5.3435 -0.6425 42 1 -0.8432 -4.9837 0.3277 43 1 -0.0498 -7.6797 -0.8601 44 1 -1.5059 -7.4799 0.1444 45 1 -0.7678 -9.8386 0.1504 46 1 -0.5935 -9.1265 1.7723 47 1 1.6423 -9.3955 -0.2887 48 1 1.4185 -10.4448 1.1319 49 1 3.0953 -8.6031 1.5162 50 1 1.7161 -8.5350 2.6413 51 1 4.8483 -6.9379 3.0942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024754214.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:41 Heat of formation + Delta-G solvation = 47.226244 kcal Electronic energy + Delta-G solvation = -31213.134784 eV Core-core repulsion = 27342.280690 eV Total energy + Delta-G solvation = -3870.854094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.26796 -38.83590 -37.62469 -36.42992 -34.03412 -33.08072 -31.15678 -30.71560 -30.01628 -29.65852 -26.89204 -26.80732 -26.00592 -24.76607 -22.58043 -22.33166 -22.09423 -20.71496 -19.56514 -19.13110 -18.18237 -17.94177 -16.56812 -15.76105 -15.59729 -15.04931 -14.80363 -14.68055 -14.32083 -14.06144 -13.93368 -13.79851 -13.50722 -13.41552 -13.18041 -12.88539 -12.54464 -12.40168 -12.03201 -11.96580 -11.85106 -11.69905 -11.25932 -11.08891 -11.01886 -10.89411 -10.86392 -10.81295 -10.69164 -10.59275 -10.30486 -10.19316 -10.14388 -10.03067 -9.55411 -9.42546 -9.28569 -9.02249 -8.63301 -8.51184 -8.02792 -6.66618 -5.90813 -3.40031 1.83861 2.48131 2.91653 3.24795 3.35904 3.42647 3.91934 4.10237 4.37466 4.64327 4.90745 5.21070 5.24073 5.26870 5.32501 5.40122 5.51878 5.61337 5.65576 5.67640 5.75688 5.84110 5.94331 5.97198 5.99824 6.08218 6.12611 6.16248 6.19252 6.31361 6.33695 6.35118 6.38214 6.41792 6.42846 6.58683 6.68843 6.71291 6.74294 6.80225 6.84964 6.89967 6.99910 7.31208 7.33642 7.37369 7.59947 7.75378 7.77780 8.36438 8.41466 9.03319 9.11143 9.71295 10.31252 11.15020 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.004521 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.612797 B = 6192.084613 C = 7345.367048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.022 3.978 3 C -0.136 4.136 4 C -0.156 4.156 5 C 0.144 3.856 6 N -0.305 5.305 7 N -0.468 5.468 8 H 0.440 0.560 9 C 0.111 3.889 10 C -0.277 4.277 11 C 0.583 3.417 12 O -0.552 6.552 13 N -0.690 5.690 14 C 0.138 3.862 15 C 0.160 3.840 16 H 0.032 0.968 17 C -0.127 4.127 18 C -0.107 4.107 19 C -0.144 4.144 20 C 0.175 3.825 21 N -0.588 5.588 22 C -0.245 4.245 23 H 0.071 0.929 24 C 0.011 3.989 25 N -0.900 5.900 26 Si 0.887 3.113 27 H -0.275 1.275 28 H -0.291 1.291 29 H -0.289 1.289 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.103 0.897 37 H 0.052 0.948 38 H 0.042 0.958 39 H 0.188 0.812 40 H 0.413 0.587 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.044 0.956 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.045 0.955 49 H 0.080 0.920 50 H 0.019 0.981 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.961 6.295 0.292 8.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.020 3.980 3 C -0.193 4.193 4 C -0.213 4.213 5 C -0.025 4.025 6 N -0.127 5.127 7 N -0.172 5.172 8 H 0.284 0.716 9 C -0.042 4.042 10 C -0.292 4.292 11 C 0.370 3.630 12 O -0.435 6.435 13 N -0.340 5.340 14 C 0.013 3.987 15 C 0.053 3.947 16 H 0.049 0.951 17 C -0.167 4.167 18 C -0.145 4.145 19 C -0.183 4.183 20 C 0.049 3.951 21 N -0.313 5.313 22 C -0.375 4.375 23 H 0.089 0.911 24 C -0.189 4.189 25 N -0.544 5.544 26 Si 0.717 3.283 27 H -0.200 1.200 28 H -0.218 1.218 29 H -0.216 1.216 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.205 0.795 40 H 0.251 0.749 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.099 0.901 50 H 0.037 0.963 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.635 7.560 0.133 9.430 hybrid contribution 1.337 -0.554 0.481 1.525 sum -4.298 7.006 0.614 8.242 Atomic orbital electron populations 1.22062 0.92811 1.04653 1.00697 1.18913 0.96172 0.93497 0.89445 1.21833 1.01129 0.95050 1.01331 1.22201 1.00327 1.04122 0.94660 1.22376 0.93654 0.91578 0.94857 1.77060 1.22001 1.13004 1.00604 1.46062 1.42579 1.07681 1.20912 0.71554 1.23325 0.92949 0.91937 0.95967 1.20325 1.13660 0.95964 0.99242 1.17177 0.80034 0.81632 0.84109 1.90503 1.47580 1.78794 1.26604 1.45919 1.51337 1.06826 1.29934 1.21231 0.94032 0.87680 0.95723 1.20840 0.87529 0.90749 0.95621 0.95058 1.22010 0.98700 0.95853 1.00098 1.21362 0.97138 0.96110 0.99895 1.22192 0.95513 0.99162 1.01470 1.20720 0.99232 0.82082 0.93048 1.44077 0.99069 1.10102 1.78024 1.19261 0.93104 1.13550 1.11585 0.91144 1.25103 0.99122 0.99261 0.95378 1.70001 1.25182 1.43991 1.15233 0.86448 0.83532 0.79495 0.78868 1.19981 1.21848 1.21613 0.94132 0.92619 0.88771 0.92704 0.92614 0.92657 0.87865 0.92863 0.93913 0.79512 0.74919 0.91705 0.92639 0.92072 0.93065 0.93761 0.92918 0.92840 0.93608 0.90127 0.96325 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.20 37.16 0.30 -1.81 16 2 C 0.02 0.34 0.75 -155.66 -0.12 0.22 16 3 C -0.14 -1.81 7.94 37.16 0.29 -1.52 16 4 C -0.16 -2.49 8.19 37.16 0.30 -2.19 16 5 C 0.14 2.43 5.64 -82.02 -0.46 1.97 16 6 N -0.31 -4.93 11.93 33.89 0.40 -4.53 16 7 N -0.47 -6.47 7.29 30.85 0.22 -6.25 16 8 H 0.44 4.46 8.96 -182.71 -1.64 2.82 16 9 C 0.11 1.67 11.52 -16.56 -0.19 1.48 16 10 C -0.28 -4.80 5.90 -105.06 -0.62 -5.42 16 11 C 0.58 10.76 7.40 -12.51 -0.09 10.67 16 12 O -0.55 -10.72 10.19 5.27 0.05 -10.67 16 13 N -0.69 -12.60 3.78 -61.38 -0.23 -12.84 16 14 C 0.14 2.46 4.46 -4.04 -0.02 2.44 16 15 C 0.16 2.92 3.06 -67.38 -0.21 2.71 16 16 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.13 -2.04 5.40 -26.39 -0.14 -2.18 16 18 C -0.11 -1.69 5.88 -26.69 -0.16 -1.85 16 19 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 20 C 0.17 3.76 5.24 -3.72 -0.02 3.74 16 21 N -0.59 -12.73 2.95 -164.53 -0.48 -13.22 16 22 C -0.25 -5.80 6.65 -15.06 -0.10 -5.90 16 23 H 0.07 1.75 6.01 -52.49 -0.32 1.44 16 24 C 0.01 0.26 5.00 -17.43 -0.09 0.17 16 25 N -0.90 -23.10 11.31 55.49 0.63 -22.47 16 26 Si 0.89 20.61 29.57 -169.99 -5.03 15.58 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H 0.04 0.55 8.11 -51.93 -0.42 0.13 16 31 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 32 H 0.09 1.58 4.81 -51.93 -0.25 1.33 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.90 4.59 -51.93 -0.24 1.66 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.19 2.53 7.48 -52.48 -0.39 2.13 16 40 H 0.41 7.82 6.10 -40.82 -0.25 7.57 16 41 H 0.06 1.27 7.56 -51.93 -0.39 0.88 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.08 1.98 6.34 -51.93 -0.33 1.65 16 50 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.25 6.41 8.31 -40.82 -0.34 6.08 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -27.57 386.02 -9.79 -37.36 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -9.70 Total: 11.40 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.47 Total: -0.19 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.54 Total: -59.30 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.05 Total: -10.67 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -27.57 -9.79 -37.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024754214.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.583 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds