Wall clock time and date at job start Tue Mar 31 2020 20:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46855 * 2 1 4 4 C 1.53002 * 109.47429 * 240.00241 * 2 1 3 5 5 C 1.50693 * 109.47175 * 119.99541 * 2 1 3 6 6 N 1.30452 * 125.98938 * 241.87698 * 5 2 1 7 7 N 1.39940 * 108.89710 * 180.02562 * 6 5 2 8 8 H 0.97004 * 125.75226 * 179.97438 * 7 6 5 9 9 C 1.34257 * 108.49098 * 359.75904 * 7 6 5 10 10 C 1.38042 * 107.41665 * 0.38731 * 9 7 6 11 11 C 1.47435 * 126.41416 * 179.87688 * 10 9 7 12 12 O 1.21603 * 119.99780 * 174.99115 * 11 10 9 13 13 N 1.34777 * 120.00262 * 354.98354 * 11 10 9 14 14 C 1.46494 * 120.00209 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46915 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.69994 * 62.67131 * 15 14 13 17 17 C 1.53623 * 109.66049 * 183.26101 * 15 14 13 18 18 C 1.53040 * 109.24106 * 174.55080 * 17 15 14 19 19 C 1.53045 * 109.53618 * 298.50902 * 18 17 15 20 20 C 1.53194 * 109.30846 * 61.36561 * 19 18 17 21 21 N 1.46916 * 108.77549 * 305.36293 * 20 19 18 22 22 C 1.36939 * 120.63234 * 233.58772 * 21 20 19 23 23 H 1.08002 * 120.00618 * 146.01394 * 22 21 20 24 24 C 1.38817 * 119.99728 * 326.29064 * 22 21 20 25 25 N 1.31613 * 120.00412 * 348.13454 * 24 22 21 26 26 Si 1.86805 * 119.99857 * 168.12869 * 24 22 21 27 27 H 1.48507 * 109.46904 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.46883 * 120.00282 * 26 24 22 29 29 H 1.48498 * 109.47373 * 240.00096 * 26 24 22 30 30 H 1.08997 * 109.47612 * 310.62753 * 1 2 3 31 31 H 1.09005 * 109.47311 * 70.63261 * 1 2 3 32 32 H 1.09001 * 109.46653 * 190.62256 * 1 2 3 33 33 H 1.08998 * 109.47384 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47240 * 299.99918 * 3 2 1 35 35 H 1.09001 * 109.47287 * 59.99224 * 3 2 1 36 36 H 1.09003 * 109.46433 * 305.90920 * 4 2 1 37 37 H 1.08990 * 109.47166 * 65.90928 * 4 2 1 38 38 H 1.08999 * 109.46680 * 185.91197 * 4 2 1 39 39 H 1.08005 * 126.29325 * 180.24150 * 9 7 6 40 40 H 0.97006 * 119.99591 * 0.02562 * 13 11 10 41 41 H 1.08997 * 109.47234 * 60.00097 * 14 13 11 42 42 H 1.09003 * 109.46923 * 300.00098 * 14 13 11 43 43 H 1.08998 * 109.63779 * 54.55972 * 17 15 14 44 44 H 1.08999 * 109.45941 * 294.42925 * 17 15 14 45 45 H 1.09004 * 109.46197 * 178.49106 * 18 17 15 46 46 H 1.09005 * 109.45319 * 58.52200 * 18 17 15 47 47 H 1.08992 * 109.49783 * 301.41417 * 19 18 17 48 48 H 1.09005 * 109.52294 * 181.33362 * 19 18 17 49 49 H 1.09004 * 109.58293 * 185.57404 * 20 19 18 50 50 H 1.08997 * 109.70422 * 65.22946 * 20 19 18 51 51 H 0.96992 * 120.00384 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0323 -0.7103 1.2305 6 7 2.7569 -0.1825 2.1781 7 7 3.0205 -1.1595 3.1447 8 1 3.5390 -1.0305 3.9543 9 6 2.4308 -2.3043 2.7647 10 6 1.8017 -2.0648 1.5596 11 6 1.0284 -3.0385 0.7673 12 8 0.4447 -2.6784 -0.2369 13 7 0.9685 -4.3276 1.1560 14 6 0.2006 -5.2952 0.3684 15 6 0.2953 -6.6750 1.0227 16 1 -0.1516 -6.6420 2.0164 17 6 -0.4404 -7.7091 0.1570 18 6 -0.2252 -9.1049 0.7466 19 6 1.2678 -9.4413 0.7339 20 6 2.0226 -8.4286 1.6007 21 7 1.7053 -7.0736 1.1297 22 6 2.7050 -6.1969 0.8022 23 1 2.5600 -5.4875 0.0008 24 6 3.9068 -6.2238 1.4964 25 7 4.0085 -6.9188 2.6094 26 14 5.3798 -5.2736 0.8507 27 1 5.0076 -4.5789 -0.4080 28 1 5.8045 -4.2721 1.8615 29 1 6.4980 -6.2141 0.5855 30 1 -0.3634 0.6691 0.7799 31 1 -0.3634 0.3408 -0.9695 32 1 -0.3633 -1.0101 0.1894 33 1 3.1299 1.4427 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6765 1.9565 0.8899 36 1 1.5929 -1.7138 -1.3037 37 1 1.7657 -0.1499 -2.1360 38 1 3.1249 -0.8137 -1.1978 39 1 2.4477 -3.2411 3.3020 40 1 1.4339 -4.6147 1.9572 41 1 0.6051 -5.3435 -0.6425 42 1 -0.8432 -4.9837 0.3277 43 1 -0.0498 -7.6797 -0.8601 44 1 -1.5059 -7.4799 0.1444 45 1 -0.7678 -9.8386 0.1504 46 1 -0.5935 -9.1265 1.7723 47 1 1.6423 -9.3955 -0.2887 48 1 1.4185 -10.4448 1.1319 49 1 3.0953 -8.6031 1.5162 50 1 1.7161 -8.5350 2.6413 51 1 4.8483 -6.9379 3.0942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024754214.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:39 Heat of formation + Delta-G solvation = 32.208986 kcal Electronic energy + Delta-G solvation = -31213.785981 eV Core-core repulsion = 27342.280690 eV Total energy + Delta-G solvation = -3871.505291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.51179 -40.29553 -39.11105 -37.63846 -35.48106 -34.82912 -32.58943 -31.94543 -31.69681 -31.00735 -28.03938 -28.00470 -27.58907 -26.37602 -23.93847 -23.71875 -23.50382 -22.18474 -20.98010 -20.59841 -19.52187 -19.14465 -18.23084 -17.31485 -17.11684 -16.45130 -16.19771 -15.91991 -15.88554 -15.62424 -15.38411 -15.04438 -14.86610 -14.78052 -14.55737 -14.36878 -14.03616 -13.77965 -13.48275 -13.45437 -12.96959 -12.93680 -12.85402 -12.76210 -12.55055 -12.34394 -12.29304 -12.17376 -12.03320 -12.01561 -11.87473 -11.73498 -11.48854 -11.42289 -11.06156 -11.00023 -10.52589 -10.49918 -10.40878 -9.84721 -9.47852 -8.46982 -7.80350 -5.29239 0.58769 1.17608 1.34956 1.44110 1.51573 1.80270 2.46138 2.53798 2.71327 3.34705 3.43285 3.65478 3.72503 4.07005 4.11014 4.16746 4.19550 4.27074 4.31382 4.43173 4.50853 4.54276 4.56053 4.65567 4.73608 4.82424 4.87511 4.91237 4.95593 4.97999 5.05212 5.05841 5.14516 5.18749 5.20445 5.24635 5.27536 5.32913 5.43941 5.51528 5.52735 5.58498 5.62910 5.67885 5.79454 5.87145 5.97499 6.24775 6.50024 6.54843 6.94641 7.24101 7.59403 7.91823 8.46747 9.23088 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.004521 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.612797 B = 6192.084613 C = 7345.367048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.018 3.982 3 C -0.129 4.129 4 C -0.151 4.151 5 C 0.132 3.868 6 N -0.315 5.315 7 N -0.453 5.453 8 H 0.457 0.543 9 C 0.120 3.880 10 C -0.305 4.305 11 C 0.580 3.420 12 O -0.564 6.564 13 N -0.693 5.693 14 C 0.143 3.857 15 C 0.160 3.840 16 H 0.034 0.966 17 C -0.122 4.122 18 C -0.103 4.103 19 C -0.136 4.136 20 C 0.180 3.820 21 N -0.600 5.600 22 C -0.225 4.225 23 H 0.059 0.941 24 C -0.020 4.020 25 N -0.920 5.920 26 Si 0.924 3.076 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.299 1.299 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.202 0.798 40 H 0.409 0.591 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.044 0.956 48 H 0.062 0.938 49 H 0.045 0.955 50 H 0.004 0.996 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.371 6.682 0.243 9.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.015 3.985 3 C -0.186 4.186 4 C -0.208 4.208 5 C -0.036 4.036 6 N -0.136 5.136 7 N -0.159 5.159 8 H 0.304 0.696 9 C -0.034 4.034 10 C -0.320 4.320 11 C 0.369 3.631 12 O -0.447 6.447 13 N -0.342 5.342 14 C 0.019 3.981 15 C 0.054 3.946 16 H 0.052 0.948 17 C -0.161 4.161 18 C -0.140 4.140 19 C -0.175 4.175 20 C 0.054 3.946 21 N -0.325 5.325 22 C -0.356 4.356 23 H 0.076 0.924 24 C -0.217 4.217 25 N -0.567 5.567 26 Si 0.756 3.244 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.227 1.227 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.219 0.781 40 H 0.246 0.754 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.063 0.937 48 H 0.081 0.919 49 H 0.064 0.936 50 H 0.022 0.978 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.052 7.962 0.090 10.636 hybrid contribution 1.755 -0.678 0.486 1.943 sum -5.297 7.284 0.576 9.025 Atomic orbital electron populations 1.21964 0.92321 1.03488 1.01744 1.19016 0.96564 0.94434 0.88447 1.21767 1.00622 0.93753 1.02446 1.22119 0.99274 1.03259 0.96167 1.22664 0.93789 0.91598 0.95518 1.77013 1.22063 1.13631 1.00933 1.46097 1.41872 1.06895 1.21032 0.69570 1.23500 0.91979 0.92587 0.95321 1.20390 1.15025 0.96248 1.00336 1.17370 0.79955 0.81755 0.84059 1.90502 1.48104 1.79010 1.27116 1.45902 1.51559 1.06973 1.29789 1.21194 0.94800 0.87609 0.94473 1.20989 0.85674 0.91685 0.96284 0.94805 1.21963 1.00038 0.95239 0.98876 1.21344 0.95436 0.96464 1.00775 1.22058 0.96751 0.98775 0.99940 1.20538 0.97683 0.83219 0.93119 1.44240 1.00270 1.10052 1.77895 1.19173 0.93486 1.12649 1.10260 0.92367 1.25350 1.00243 1.00295 0.95811 1.70072 1.25059 1.45433 1.16101 0.85872 0.82125 0.78531 0.77871 1.21275 1.21610 1.22667 0.93247 0.91288 0.90995 0.93396 0.90585 0.92437 0.90343 0.90813 0.95105 0.78126 0.75402 0.93754 0.90816 0.92905 0.90065 0.90989 0.92396 0.93732 0.91928 0.93645 0.97828 0.94227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 8.20 71.98 0.59 -3.28 16 2 C 0.02 0.52 0.75 -52.93 -0.04 0.48 16 3 C -0.13 -3.20 7.94 71.98 0.57 -2.63 16 4 C -0.15 -4.76 8.19 71.98 0.59 -4.17 16 5 C 0.13 4.39 5.64 43.51 0.25 4.64 16 6 N -0.31 -9.82 11.93 -46.68 -0.56 -10.38 16 7 N -0.45 -11.94 7.29 -56.32 -0.41 -12.35 16 8 H 0.46 8.48 8.96 -213.42 -1.91 6.57 16 9 C 0.12 3.53 11.52 84.28 0.97 4.50 16 10 C -0.31 -10.49 5.90 -20.15 -0.12 -10.61 16 11 C 0.58 21.52 7.40 86.67 0.64 22.16 16 12 O -0.56 -22.07 10.19 -4.04 -0.04 -22.11 16 13 N -0.69 -25.28 3.78 -466.37 -1.76 -27.04 16 14 C 0.14 5.03 4.46 86.38 0.39 5.42 16 15 C 0.16 5.63 3.06 45.12 0.14 5.77 16 16 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 17 C -0.12 -3.59 5.40 30.82 0.17 -3.42 16 18 C -0.10 -2.91 5.88 30.62 0.18 -2.73 16 19 C -0.14 -4.65 6.08 30.67 0.19 -4.46 16 20 C 0.18 7.75 5.24 86.37 0.45 8.21 16 21 N -0.60 -25.86 2.95 -674.44 -1.99 -27.85 16 22 C -0.22 -10.74 6.65 84.03 0.56 -10.18 16 23 H 0.06 2.94 6.01 -2.91 -0.02 2.93 16 24 C -0.02 -1.01 5.00 84.86 0.42 -0.58 16 25 N -0.92 -47.94 11.31 21.65 0.24 -47.70 16 26 Si 0.92 43.00 29.57 68.60 2.03 45.03 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 28 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 29 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 30 H 0.05 1.27 8.11 -2.39 -0.02 1.25 16 31 H 0.07 1.71 8.11 -2.38 -0.02 1.69 16 32 H 0.07 2.39 4.81 -2.39 -0.01 2.37 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 2.92 4.59 -2.39 -0.01 2.91 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.20 5.26 7.48 -2.91 -0.02 5.24 16 40 H 0.41 15.49 6.10 -92.70 -0.57 14.93 16 41 H 0.04 1.74 7.56 -2.39 -0.02 1.72 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 46 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 47 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 49 H 0.05 2.27 6.34 -2.38 -0.02 2.25 16 50 H 0.00 0.16 8.14 -2.39 -0.02 0.15 16 51 H 0.25 12.79 8.31 -92.71 -0.77 12.02 16 Total: -1.00 -59.50 386.02 1.93 -57.57 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -1.53 Total: 35.72 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 5.94 Total: 9.10 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -4.47 Total: -125.31 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.04 Total: -22.11 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -59.50 1.93 -57.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024754214.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.781 kcal (2) G-P(sol) polarization free energy of solvation -59.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds