Wall clock time and date at job start Tue Mar 31 2020 19:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47032 * 2 1 4 4 C 1.50698 * 109.46697 * 119.99518 * 2 1 3 5 5 N 1.30446 * 125.99483 * 300.17156 * 4 2 1 6 6 N 1.39936 * 108.89916 * 180.26313 * 5 4 2 7 7 C 1.46500 * 125.75335 * 179.73689 * 6 5 4 8 8 C 1.34258 * 108.49318 * 359.73940 * 6 5 4 9 9 C 1.38047 * 107.41330 * 359.97438 * 8 6 5 10 10 C 1.47432 * 126.41311 * 179.97438 * 9 8 6 11 11 O 1.21601 * 120.00157 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99664 * 0.02562 * 10 9 8 13 13 C 1.46507 * 119.99836 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.46980 * 180.02562 * 13 12 10 15 15 H 1.09008 * 109.70169 * 60.13700 * 14 13 12 16 16 C 1.53622 * 109.66379 * 180.72593 * 14 13 12 17 17 C 1.53045 * 109.24341 * 174.55061 * 16 14 13 18 18 C 1.53035 * 109.53749 * 298.51301 * 17 16 14 19 19 C 1.53189 * 109.31263 * 61.36394 * 18 17 16 20 20 N 1.46921 * 108.77765 * 305.36193 * 19 18 17 21 21 C 1.36939 * 120.63686 * 233.58768 * 20 19 18 22 22 H 1.07994 * 120.00390 * 148.86598 * 21 20 19 23 23 C 1.38809 * 119.99340 * 329.14595 * 21 20 19 24 24 N 1.31625 * 119.99839 * 162.65761 * 23 21 20 25 25 Si 1.86802 * 120.00423 * 342.64802 * 23 21 20 26 26 H 1.48501 * 109.46886 * 89.02400 * 25 23 21 27 27 H 1.48497 * 109.47447 * 209.02743 * 25 23 21 28 28 H 1.48496 * 109.46875 * 329.02968 * 25 23 21 29 29 H 1.08996 * 109.47366 * 300.00479 * 1 2 3 30 30 H 1.09001 * 109.46837 * 60.00346 * 1 2 3 31 31 H 1.08997 * 109.47107 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46995 * 239.99374 * 2 1 3 33 33 H 1.08997 * 109.46879 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47027 * 299.99537 * 3 2 1 35 35 H 1.08996 * 109.47436 * 59.99564 * 3 2 1 36 36 H 1.09002 * 109.46752 * 270.00111 * 7 6 5 37 37 H 1.08996 * 109.46993 * 29.99785 * 7 6 5 38 38 H 1.08993 * 109.47271 * 150.00374 * 7 6 5 39 39 H 1.07999 * 126.29346 * 179.97438 * 8 6 5 40 40 H 0.96993 * 120.00037 * 0.02562 * 12 10 9 41 41 H 1.09007 * 109.46607 * 60.00069 * 13 12 10 42 42 H 1.08998 * 109.47044 * 300.00775 * 13 12 10 43 43 H 1.09000 * 109.63450 * 54.55744 * 16 14 13 44 44 H 1.09001 * 109.45681 * 294.43748 * 16 14 13 45 45 H 1.08995 * 109.46075 * 178.48841 * 17 16 14 46 46 H 1.08999 * 109.44362 * 58.52810 * 17 16 14 47 47 H 1.09001 * 109.49951 * 301.41033 * 18 17 16 48 48 H 1.09002 * 109.52387 * 181.33046 * 18 17 16 49 49 H 1.09006 * 109.58311 * 185.58038 * 19 18 17 50 50 H 1.09004 * 109.70475 * 65.22346 * 19 18 17 51 51 H 0.97003 * 119.99870 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7877 -0.3698 2.4658 6 7 2.4333 -1.2703 3.3205 7 6 2.4092 -1.2280 4.7847 8 6 3.0786 -2.1795 2.5725 9 6 2.8475 -1.8642 1.2485 10 6 3.3614 -2.5910 0.0732 11 8 3.0840 -2.2087 -1.0473 12 7 4.1387 -3.6793 0.2408 13 6 4.6489 -4.4020 -0.9271 14 6 5.4964 -5.5880 -0.4626 15 1 4.8867 -6.2622 0.1389 16 6 6.0487 -6.3384 -1.6840 17 6 7.0029 -7.4377 -1.2115 18 6 8.1787 -6.8074 -0.4617 19 6 7.6535 -6.0613 0.7688 20 7 6.6283 -5.1012 0.3378 21 6 6.7229 -3.7787 0.6803 22 1 6.3294 -3.0203 0.0198 23 6 7.3298 -3.4126 1.8738 24 7 7.7296 -2.1718 2.0553 25 14 7.5790 -4.6809 3.2225 26 1 8.8862 -5.3585 3.0293 27 1 7.5615 -4.0067 4.5454 28 1 6.4873 -5.6859 3.1646 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.2400 -0.6209 5.1443 37 1 1.4684 -0.7916 5.1201 38 1 2.5014 -2.2399 5.1790 39 1 3.6697 -3.0056 2.9391 40 1 4.3596 -3.9845 1.1346 41 1 5.2611 -3.7314 -1.5302 42 1 3.8121 -4.7652 -1.5236 43 1 6.5858 -5.6430 -2.3291 44 1 5.2240 -6.7861 -2.2386 45 1 7.3762 -7.9899 -2.0739 46 1 6.4713 -8.1186 -0.5468 47 1 8.6958 -6.1076 -1.1183 48 1 8.8702 -7.5886 -0.1458 49 1 8.4734 -5.5287 1.2506 50 1 7.2167 -6.7718 1.4707 51 1 8.1534 -1.9159 2.8895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024798597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:52 Heat of formation + Delta-G solvation = 52.245488 kcal Electronic energy + Delta-G solvation = -30693.333661 eV Core-core repulsion = 26822.697218 eV Total energy + Delta-G solvation = -3870.636443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.11941 -38.88008 -37.72278 -35.57358 -34.08949 -33.04818 -32.28867 -31.11345 -30.72755 -29.68111 -26.90587 -26.88272 -26.02851 -24.63205 -22.68777 -22.45132 -21.91344 -20.76600 -19.70215 -19.25426 -18.76200 -17.36808 -16.45485 -15.75779 -15.53103 -15.40134 -14.97995 -14.88710 -14.42972 -14.21453 -13.82234 -13.73161 -13.70711 -13.40990 -13.26216 -13.13304 -12.79971 -12.67669 -12.45782 -12.29033 -12.14239 -11.95268 -11.84009 -11.64464 -11.29109 -11.13935 -10.92371 -10.86243 -10.76252 -10.63539 -10.46071 -10.40164 -10.20655 -9.98099 -9.59583 -9.50318 -9.06484 -9.02406 -8.71625 -8.38956 -8.02921 -6.96322 -5.99548 -3.41030 1.90014 2.55757 2.59902 3.21249 3.35246 3.37702 3.96570 4.18438 4.42647 4.54650 4.80327 4.89609 5.02392 5.15172 5.21121 5.27078 5.33714 5.39275 5.40849 5.46748 5.49060 5.55098 5.74930 5.76476 5.83221 5.86521 5.92185 5.95255 5.97867 6.06588 6.11046 6.17395 6.21008 6.23740 6.29028 6.38451 6.44135 6.46879 6.51628 6.56899 6.60445 6.67677 6.75860 6.89829 6.98880 7.07311 7.30009 7.89444 7.91985 8.32514 8.41105 8.88490 9.05732 9.64762 10.03668 11.14745 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.004290 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.932408 B = 6525.434796 C = 7835.363626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C -0.139 4.139 4 C 0.139 3.861 5 N -0.305 5.305 6 N -0.367 5.367 7 C 0.100 3.900 8 C 0.109 3.891 9 C -0.275 4.275 10 C 0.593 3.407 11 O -0.564 6.564 12 N -0.694 5.694 13 C 0.138 3.862 14 C 0.163 3.837 15 H 0.036 0.964 16 C -0.128 4.128 17 C -0.108 4.108 18 C -0.136 4.136 19 C 0.125 3.875 20 N -0.604 5.604 21 C -0.259 4.259 22 H 0.096 0.904 23 C 0.028 3.972 24 N -0.902 5.902 25 Si 0.875 3.125 26 H -0.287 1.287 27 H -0.306 1.306 28 H -0.272 1.272 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.119 0.881 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.181 0.819 40 H 0.406 0.594 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.063 0.937 48 H 0.050 0.950 49 H 0.072 0.928 50 H 0.023 0.977 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.870 -3.427 1.114 10.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.050 4.050 3 C -0.197 4.197 4 C -0.029 4.029 5 N -0.126 5.126 6 N -0.145 5.145 7 C -0.041 4.041 8 C -0.042 4.042 9 C -0.290 4.290 10 C 0.381 3.619 11 O -0.446 6.446 12 N -0.343 5.343 13 C 0.014 3.986 14 C 0.056 3.944 15 H 0.054 0.946 16 C -0.168 4.168 17 C -0.146 4.146 18 C -0.175 4.175 19 C 0.000 4.000 20 N -0.330 5.330 21 C -0.387 4.387 22 H 0.113 0.887 23 C -0.172 4.172 24 N -0.544 5.544 25 Si 0.706 3.294 26 H -0.215 1.215 27 H -0.235 1.235 28 H -0.197 1.197 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.198 0.802 40 H 0.242 0.758 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.069 0.931 49 H 0.090 0.910 50 H 0.040 0.960 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.581 -2.201 1.403 10.898 hybrid contribution 1.220 -1.516 1.169 2.270 sum -9.361 -3.718 2.571 10.395 Atomic orbital electron populations 1.21761 0.94413 1.01670 1.01596 1.19941 0.95438 0.95634 0.93946 1.21767 1.01550 0.94847 1.01499 1.22289 0.94429 0.93037 0.93160 1.77023 1.20866 1.14517 1.00193 1.48182 1.38230 1.21356 1.06767 1.21902 1.04237 1.03916 0.74055 1.23106 0.95127 0.94820 0.91172 1.20261 1.12542 1.03479 0.92700 1.17136 0.77790 0.79738 0.87276 1.90615 1.61099 1.67732 1.25113 1.45730 1.49451 1.28527 1.10602 1.21214 0.96030 0.93341 0.88037 1.20850 0.88623 0.93185 0.91714 0.94624 1.22006 0.98627 0.97896 0.98250 1.21366 0.96848 0.97275 0.99097 1.21999 0.97120 0.99130 0.99230 1.21374 0.92347 0.92058 0.94245 1.44439 1.20758 1.05845 1.61916 1.19045 1.36577 0.81439 1.01663 0.88698 1.25346 0.99315 0.95148 0.97364 1.69829 1.41457 1.17206 1.25947 0.87111 0.78424 0.81634 0.82256 1.21498 1.23472 1.19714 0.92671 0.92299 0.92872 0.86340 0.92437 0.92293 0.92691 0.90409 0.89290 0.89362 0.80237 0.75779 0.91239 0.92443 0.91561 0.92565 0.93087 0.92818 0.91782 0.93138 0.91020 0.95955 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.18 37.16 0.34 -1.47 16 2 C -0.03 -0.47 3.26 -91.77 -0.30 -0.77 16 3 C -0.14 -2.01 9.17 37.15 0.34 -1.67 16 4 C 0.14 2.48 5.77 -82.02 -0.47 2.00 16 5 N -0.31 -5.22 12.50 33.89 0.42 -4.80 16 6 N -0.37 -5.61 3.98 -67.60 -0.27 -5.88 16 7 C 0.10 1.03 11.44 59.85 0.68 1.71 16 8 C 0.11 1.79 10.99 -16.56 -0.18 1.61 16 9 C -0.28 -5.16 6.13 -105.06 -0.64 -5.81 16 10 C 0.59 12.00 7.81 -12.51 -0.10 11.91 16 11 O -0.56 -12.45 14.56 5.28 0.08 -12.37 16 12 N -0.69 -13.30 3.84 -61.38 -0.24 -13.53 16 13 C 0.14 2.53 4.44 -4.04 -0.02 2.51 16 14 C 0.16 2.89 3.03 -67.38 -0.20 2.69 16 15 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 16 C -0.13 -1.96 5.40 -26.39 -0.14 -2.10 16 17 C -0.11 -1.57 5.88 -26.69 -0.16 -1.73 16 18 C -0.14 -2.26 6.08 -26.62 -0.16 -2.42 16 19 C 0.12 2.51 4.19 -3.72 -0.02 2.50 16 20 N -0.60 -12.78 2.71 -164.53 -0.45 -13.23 16 21 C -0.26 -6.42 7.42 -15.06 -0.11 -6.53 16 22 H 0.10 2.64 6.07 -52.49 -0.32 2.32 16 23 C 0.03 0.72 5.27 -17.43 -0.09 0.63 16 24 N -0.90 -25.87 13.97 55.49 0.78 -25.10 16 25 Si 0.88 20.29 24.32 -169.99 -4.13 16.16 16 26 H -0.29 -6.68 6.52 56.52 0.37 -6.31 16 27 H -0.31 -7.31 7.11 56.52 0.40 -6.90 16 28 H -0.27 -6.04 6.75 56.52 0.38 -5.66 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.12 2.12 5.60 -51.93 -0.29 1.83 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.18 2.63 7.46 -52.49 -0.39 2.24 16 40 H 0.41 7.74 6.31 -40.82 -0.26 7.49 16 41 H 0.07 1.45 7.42 -51.93 -0.39 1.06 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.07 1.61 4.64 -51.93 -0.24 1.37 16 50 H 0.02 0.45 7.05 -51.93 -0.37 0.08 16 51 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -31.41 392.98 -7.75 -39.16 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -8.63 Total: 10.61 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.23 Total: 3.06 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 0.25 Total: -62.54 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.37 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.13 Total: 16.16 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.41 -7.75 -39.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024798597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.401 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds