Wall clock time and date at job start Tue Mar 31 2020 19:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47032 * 2 1 4 4 C 1.50698 * 109.46697 * 119.99518 * 2 1 3 5 5 N 1.30446 * 125.99483 * 300.17156 * 4 2 1 6 6 N 1.39936 * 108.89916 * 180.26313 * 5 4 2 7 7 C 1.46500 * 125.75335 * 179.73689 * 6 5 4 8 8 C 1.34258 * 108.49318 * 359.73940 * 6 5 4 9 9 C 1.38047 * 107.41330 * 359.97438 * 8 6 5 10 10 C 1.47432 * 126.41311 * 179.97438 * 9 8 6 11 11 O 1.21601 * 120.00157 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99664 * 0.02562 * 10 9 8 13 13 C 1.46507 * 119.99836 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.46980 * 180.02562 * 13 12 10 15 15 H 1.09008 * 109.70169 * 60.13700 * 14 13 12 16 16 C 1.53622 * 109.66379 * 180.72593 * 14 13 12 17 17 C 1.53045 * 109.24341 * 174.55061 * 16 14 13 18 18 C 1.53035 * 109.53749 * 298.51301 * 17 16 14 19 19 C 1.53189 * 109.31263 * 61.36394 * 18 17 16 20 20 N 1.46921 * 108.77765 * 305.36193 * 19 18 17 21 21 C 1.36939 * 120.63686 * 233.58768 * 20 19 18 22 22 H 1.07994 * 120.00390 * 148.86598 * 21 20 19 23 23 C 1.38809 * 119.99340 * 329.14595 * 21 20 19 24 24 N 1.31625 * 119.99839 * 162.65761 * 23 21 20 25 25 Si 1.86802 * 120.00423 * 342.64802 * 23 21 20 26 26 H 1.48501 * 109.46886 * 89.02400 * 25 23 21 27 27 H 1.48497 * 109.47447 * 209.02743 * 25 23 21 28 28 H 1.48496 * 109.46875 * 329.02968 * 25 23 21 29 29 H 1.08996 * 109.47366 * 300.00479 * 1 2 3 30 30 H 1.09001 * 109.46837 * 60.00346 * 1 2 3 31 31 H 1.08997 * 109.47107 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46995 * 239.99374 * 2 1 3 33 33 H 1.08997 * 109.46879 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47027 * 299.99537 * 3 2 1 35 35 H 1.08996 * 109.47436 * 59.99564 * 3 2 1 36 36 H 1.09002 * 109.46752 * 270.00111 * 7 6 5 37 37 H 1.08996 * 109.46993 * 29.99785 * 7 6 5 38 38 H 1.08993 * 109.47271 * 150.00374 * 7 6 5 39 39 H 1.07999 * 126.29346 * 179.97438 * 8 6 5 40 40 H 0.96993 * 120.00037 * 0.02562 * 12 10 9 41 41 H 1.09007 * 109.46607 * 60.00069 * 13 12 10 42 42 H 1.08998 * 109.47044 * 300.00775 * 13 12 10 43 43 H 1.09000 * 109.63450 * 54.55744 * 16 14 13 44 44 H 1.09001 * 109.45681 * 294.43748 * 16 14 13 45 45 H 1.08995 * 109.46075 * 178.48841 * 17 16 14 46 46 H 1.08999 * 109.44362 * 58.52810 * 17 16 14 47 47 H 1.09001 * 109.49951 * 301.41033 * 18 17 16 48 48 H 1.09002 * 109.52387 * 181.33046 * 18 17 16 49 49 H 1.09006 * 109.58311 * 185.58038 * 19 18 17 50 50 H 1.09004 * 109.70475 * 65.22346 * 19 18 17 51 51 H 0.97003 * 119.99870 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7877 -0.3698 2.4658 6 7 2.4333 -1.2703 3.3205 7 6 2.4092 -1.2280 4.7847 8 6 3.0786 -2.1795 2.5725 9 6 2.8475 -1.8642 1.2485 10 6 3.3614 -2.5910 0.0732 11 8 3.0840 -2.2087 -1.0473 12 7 4.1387 -3.6793 0.2408 13 6 4.6489 -4.4020 -0.9271 14 6 5.4964 -5.5880 -0.4626 15 1 4.8867 -6.2622 0.1389 16 6 6.0487 -6.3384 -1.6840 17 6 7.0029 -7.4377 -1.2115 18 6 8.1787 -6.8074 -0.4617 19 6 7.6535 -6.0613 0.7688 20 7 6.6283 -5.1012 0.3378 21 6 6.7229 -3.7787 0.6803 22 1 6.3294 -3.0203 0.0198 23 6 7.3298 -3.4126 1.8738 24 7 7.7296 -2.1718 2.0553 25 14 7.5790 -4.6809 3.2225 26 1 8.8862 -5.3585 3.0293 27 1 7.5615 -4.0067 4.5454 28 1 6.4873 -5.6859 3.1646 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.2400 -0.6209 5.1443 37 1 1.4684 -0.7916 5.1201 38 1 2.5014 -2.2399 5.1790 39 1 3.6697 -3.0056 2.9391 40 1 4.3596 -3.9845 1.1346 41 1 5.2611 -3.7314 -1.5302 42 1 3.8121 -4.7652 -1.5236 43 1 6.5858 -5.6430 -2.3291 44 1 5.2240 -6.7861 -2.2386 45 1 7.3762 -7.9899 -2.0739 46 1 6.4713 -8.1186 -0.5468 47 1 8.6958 -6.1076 -1.1183 48 1 8.8702 -7.5886 -0.1458 49 1 8.4734 -5.5287 1.2506 50 1 7.2167 -6.7718 1.4707 51 1 8.1534 -1.9159 2.8895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024798597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:50 Heat of formation + Delta-G solvation = 32.226178 kcal Electronic energy + Delta-G solvation = -30694.201763 eV Core-core repulsion = 26822.697218 eV Total energy + Delta-G solvation = -3871.504545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.42456 -40.41687 -39.24971 -36.79084 -35.60001 -34.81939 -33.44534 -32.62936 -32.39291 -31.04166 -28.08593 -28.00921 -27.51464 -26.25210 -24.26958 -23.79721 -23.14870 -22.20596 -21.20746 -20.71043 -20.07316 -18.85827 -18.11981 -17.35817 -16.99339 -16.73091 -16.47395 -16.38813 -15.62930 -15.45972 -15.30467 -15.24567 -15.12929 -14.81159 -14.75901 -14.30073 -14.26599 -14.03111 -13.69505 -13.56278 -13.51981 -13.29731 -13.17270 -12.95918 -12.85826 -12.49678 -12.36641 -12.26072 -12.10013 -11.96144 -11.92148 -11.72938 -11.65890 -11.52890 -11.18116 -11.17319 -10.59405 -10.55547 -10.32366 -9.90081 -9.47806 -8.74453 -8.02394 -5.40166 0.56595 1.16945 1.36833 1.44159 1.47906 1.54414 2.44411 2.49975 2.68096 3.13582 3.36010 3.38820 3.66377 3.94645 3.98807 4.10532 4.11974 4.20021 4.28363 4.31366 4.36288 4.37481 4.44854 4.50114 4.55747 4.62304 4.64221 4.65088 4.67738 4.80467 4.84025 4.90128 4.94812 4.98362 4.98831 5.09608 5.12061 5.19084 5.28097 5.33360 5.34000 5.35952 5.36316 5.59906 5.65016 5.75315 5.92137 6.00142 6.32207 6.56859 6.85178 7.01126 7.49074 7.72399 8.13271 9.15993 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.004290 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.932408 B = 6525.434796 C = 7835.363626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.034 4.034 3 C -0.132 4.132 4 C 0.126 3.874 5 N -0.314 5.314 6 N -0.361 5.361 7 C 0.088 3.912 8 C 0.114 3.886 9 C -0.312 4.312 10 C 0.587 3.413 11 O -0.592 6.592 12 N -0.691 5.691 13 C 0.141 3.859 14 C 0.163 3.837 15 H 0.057 0.943 16 C -0.124 4.124 17 C -0.103 4.103 18 C -0.132 4.132 19 C 0.119 3.881 20 N -0.615 5.615 21 C -0.227 4.227 22 H 0.055 0.945 23 C -0.026 4.026 24 N -0.957 5.957 25 Si 0.938 3.062 26 H -0.289 1.289 27 H -0.317 1.317 28 H -0.249 1.249 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.197 0.803 40 H 0.406 0.594 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.046 0.954 48 H 0.075 0.925 49 H 0.044 0.956 50 H 0.036 0.964 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.059 -6.132 1.869 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.054 4.054 3 C -0.190 4.190 4 C -0.041 4.041 5 N -0.136 5.136 6 N -0.138 5.138 7 C -0.051 4.051 8 C -0.038 4.038 9 C -0.327 4.327 10 C 0.376 3.624 11 O -0.475 6.475 12 N -0.340 5.340 13 C 0.017 3.983 14 C 0.057 3.943 15 H 0.074 0.926 16 C -0.164 4.164 17 C -0.140 4.140 18 C -0.171 4.171 19 C -0.006 4.006 20 N -0.341 5.341 21 C -0.356 4.356 22 H 0.073 0.927 23 C -0.221 4.221 24 N -0.603 5.603 25 Si 0.768 3.232 26 H -0.216 1.216 27 H -0.246 1.246 28 H -0.173 1.173 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.214 0.786 40 H 0.242 0.758 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.093 0.907 49 H 0.062 0.938 50 H 0.054 0.946 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.791 -4.960 2.158 12.973 hybrid contribution 1.602 -0.662 0.886 1.946 sum -10.189 -5.622 3.044 12.029 Atomic orbital electron populations 1.21686 0.92153 1.01709 1.02873 1.19970 0.97307 0.95769 0.92357 1.21719 0.99889 0.94417 1.02956 1.22589 0.94455 0.93030 0.94026 1.76959 1.21411 1.15114 1.00076 1.48620 1.36738 1.20113 1.08362 1.22364 1.05479 1.06222 0.71084 1.23317 0.94646 0.95191 0.90691 1.20352 1.14407 1.04700 0.93204 1.17449 0.77627 0.79790 0.87530 1.90584 1.62269 1.68430 1.26258 1.45710 1.49086 1.28424 1.10761 1.21229 0.96361 0.92967 0.87737 1.21059 0.87617 0.93042 0.92553 0.92585 1.21979 0.99757 0.97763 0.96861 1.21362 0.95623 0.96937 1.00086 1.21937 0.98441 0.99176 0.97508 1.21440 0.91264 0.91852 0.96038 1.44545 1.22546 1.04737 1.62319 1.18744 1.34020 0.82594 1.00275 0.92731 1.25844 1.00086 0.96561 0.99560 1.69994 1.44247 1.19767 1.26315 0.86083 0.78810 0.79564 0.78756 1.21619 1.24625 1.17302 0.92210 0.90102 0.93439 0.88774 0.94910 0.89843 0.92147 0.89906 0.87468 0.86406 0.78580 0.75760 0.94674 0.90453 0.93289 0.89469 0.90469 0.91264 0.93528 0.90681 0.93813 0.94588 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.18 71.98 0.66 -2.61 16 2 C -0.03 -1.10 3.26 -11.54 -0.04 -1.14 16 3 C -0.13 -3.89 9.17 71.98 0.66 -3.23 16 4 C 0.13 4.62 5.77 43.52 0.25 4.87 16 5 N -0.31 -10.69 12.50 -46.68 -0.58 -11.27 16 6 N -0.36 -10.71 3.98 -367.79 -1.46 -12.18 16 7 C 0.09 1.61 11.44 127.77 1.46 3.07 16 8 C 0.11 3.76 10.99 84.28 0.93 4.69 16 9 C -0.31 -12.05 6.13 -20.15 -0.12 -12.18 16 10 C 0.59 24.78 7.81 86.66 0.68 25.45 16 11 O -0.59 -27.48 14.56 -4.03 -0.06 -27.53 16 12 N -0.69 -27.06 3.84 -466.35 -1.79 -28.85 16 13 C 0.14 5.21 4.44 86.38 0.38 5.60 16 14 C 0.16 5.48 3.03 45.12 0.14 5.62 16 15 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 16 C -0.12 -3.45 5.40 30.82 0.17 -3.28 16 17 C -0.10 -2.55 5.88 30.62 0.18 -2.37 16 18 C -0.13 -4.02 6.08 30.67 0.19 -3.84 16 19 C 0.12 4.53 4.19 86.36 0.36 4.89 16 20 N -0.62 -25.51 2.71 -674.44 -1.83 -27.34 16 21 C -0.23 -11.50 7.42 84.03 0.62 -10.88 16 22 H 0.06 3.21 6.07 -2.91 -0.02 3.19 16 23 C -0.03 -1.38 5.27 84.86 0.45 -0.93 16 24 N -0.96 -57.14 13.97 21.65 0.30 -56.83 16 25 Si 0.94 42.05 24.32 68.60 1.67 43.72 16 26 H -0.29 -12.89 6.52 99.48 0.65 -12.24 16 27 H -0.32 -14.66 7.11 99.48 0.71 -13.95 16 28 H -0.25 -10.10 6.75 99.48 0.67 -9.43 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 3.55 5.60 -2.39 -0.01 3.54 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.20 5.61 7.46 -2.91 -0.02 5.58 16 40 H 0.41 15.56 6.31 -92.71 -0.59 14.98 16 41 H 0.03 1.53 7.42 -2.38 -0.02 1.51 16 42 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.04 1.92 4.64 -2.38 -0.01 1.90 16 50 H 0.04 1.30 7.05 -2.39 -0.02 1.28 16 51 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -71.81 392.98 3.45 -68.36 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: 0.24 Total: 38.20 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.96 Total: 13.73 kcal Atomic # 7 Polarization: -131.12 SS G_CDS: -5.36 Total: -136.48 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.06 Total: -27.53 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.67 Total: 43.72 kcal Total: -71.81 3.45 -68.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024798597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.586 kcal (2) G-P(sol) polarization free energy of solvation -71.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds