Wall clock time and date at job start Tue Mar 31 2020 18:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47281 * 2 1 4 4 N 1.30456 * 125.98658 * 270.20808 * 3 2 1 5 5 N 1.39942 * 108.89551 * 180.26293 * 4 3 2 6 6 C 1.46496 * 125.75317 * 179.69280 * 5 4 3 7 7 C 1.34261 * 108.49074 * 359.71811 * 5 4 3 8 8 C 1.38049 * 107.41734 * 359.97438 * 7 5 4 9 9 C 1.47431 * 126.41356 * 180.02562 * 8 7 5 10 10 O 1.21607 * 120.00019 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00067 * 359.74248 * 9 8 7 12 12 C 1.46497 * 119.99887 * 180.27479 * 11 9 8 13 13 H 1.09002 * 109.46869 * 35.00672 * 12 11 9 14 14 C 1.52995 * 109.47371 * 275.00187 * 12 11 9 15 15 C 1.53005 * 109.46904 * 155.00083 * 12 11 9 16 16 H 1.08999 * 109.49692 * 305.06728 * 15 12 11 17 17 C 1.53038 * 109.49578 * 185.00033 * 15 12 11 18 18 C 1.53051 * 109.53503 * 178.68560 * 17 15 12 19 19 C 1.53187 * 109.31249 * 61.36505 * 18 17 15 20 20 N 1.46928 * 108.77713 * 305.36750 * 19 18 17 21 21 C 1.36939 * 120.62566 * 233.58546 * 20 19 18 22 22 H 1.08003 * 119.99311 * 151.83445 * 21 20 19 23 23 C 1.38808 * 120.00435 * 331.83207 * 21 20 19 24 24 N 1.31623 * 119.99684 * 343.07758 * 23 21 20 25 25 Si 1.86796 * 120.00156 * 163.07607 * 23 21 20 26 26 H 1.48495 * 109.47101 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47118 * 120.00097 * 25 23 21 28 28 H 1.48499 * 109.47103 * 240.00233 * 25 23 21 29 29 C 1.46926 * 118.73869 * 53.60488 * 20 19 18 30 30 H 1.09004 * 109.47308 * 300.00102 * 1 2 3 31 31 H 1.09004 * 109.46923 * 59.99944 * 1 2 3 32 32 H 1.09000 * 109.47583 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46956 * 239.99487 * 2 1 3 34 34 H 1.09004 * 109.46923 * 120.00056 * 2 1 3 35 35 H 1.08994 * 109.47088 * 270.02360 * 6 5 4 36 36 H 1.08990 * 109.47260 * 30.02936 * 6 5 4 37 37 H 1.09007 * 109.46999 * 150.02785 * 6 5 4 38 38 H 1.08000 * 126.28939 * 180.02562 * 7 5 4 39 39 H 0.97001 * 119.99890 * 0.28116 * 11 9 8 40 40 H 1.08994 * 109.47226 * 299.99906 * 14 12 11 41 41 H 1.09000 * 109.47286 * 60.00350 * 14 12 11 42 42 H 1.09005 * 109.47204 * 179.97438 * 14 12 11 43 43 H 1.08999 * 109.46609 * 298.70455 * 17 15 12 44 44 H 1.09003 * 109.46101 * 58.68337 * 17 15 12 45 45 H 1.08995 * 109.49411 * 181.32119 * 18 17 15 46 46 H 1.09000 * 109.49474 * 301.38087 * 18 17 15 47 47 H 1.09005 * 109.58394 * 65.15063 * 19 18 17 48 48 H 1.09000 * 109.58764 * 185.57243 * 19 18 17 49 49 H 0.96998 * 119.99593 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.58468 * 186.60310 * 29 20 19 51 51 H 1.09002 * 109.58486 * 66.18685 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2842 2.1447 -1.0556 5 7 2.7373 3.4033 -0.6443 6 6 3.1313 4.5023 -1.5292 7 6 2.7504 3.4334 0.6979 8 6 2.3086 2.2037 1.1432 9 6 2.1593 1.7838 2.5485 10 8 1.7580 0.6660 2.8097 11 7 2.4730 2.6368 3.5437 12 6 2.3304 2.2174 4.9401 13 1 2.5761 1.1592 5.0285 14 6 0.8881 2.4461 5.3966 15 6 3.2791 3.0362 5.8179 16 1 4.2965 2.9448 5.4377 17 6 3.2223 2.5150 7.2557 18 6 4.1953 3.3121 8.1278 19 6 3.7809 4.7868 8.1314 20 7 3.6922 5.2565 6.7420 21 6 4.3772 6.3711 6.3373 22 1 4.6916 6.4677 5.3086 23 6 4.6673 7.3767 7.2492 24 7 4.0197 7.4342 8.3936 25 14 5.9768 8.6483 6.8521 26 1 6.5521 8.3647 5.5128 27 1 5.3677 10.0026 6.8520 28 1 7.0511 8.5887 7.8756 29 6 2.8544 4.5079 5.7953 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.1959 4.4270 -1.7502 36 1 2.5625 4.4435 -2.4570 37 1 2.9286 5.4544 -1.0385 38 1 3.0506 4.2669 1.3156 39 1 2.7932 3.5285 3.3353 40 1 0.6425 3.5044 5.3082 41 1 0.2123 1.8628 4.7712 42 1 0.7819 2.1337 6.4354 43 1 2.2101 2.6290 7.6436 44 1 3.5007 1.4613 7.2712 45 1 4.1715 2.9249 9.1464 46 1 5.2043 3.2181 7.7263 47 1 2.8100 4.8924 8.6154 48 1 4.5253 5.3742 8.6689 49 1 4.2227 8.1367 9.0309 50 1 2.9874 4.9113 4.7915 51 1 1.8079 4.5908 6.0889 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025452410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:17 Heat of formation + Delta-G solvation = 44.098398 kcal Electronic energy + Delta-G solvation = -29767.726888 eV Core-core repulsion = 25896.737160 eV Total energy + Delta-G solvation = -3870.989727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.57032 -39.46921 -37.84891 -35.27818 -34.64440 -33.07244 -32.04001 -31.29432 -30.47056 -29.92642 -28.03601 -27.07088 -25.32643 -24.40839 -23.47283 -22.50615 -22.06468 -20.80815 -19.91887 -19.63448 -18.61638 -17.67709 -16.70289 -16.11813 -15.92072 -15.51698 -14.92065 -14.82812 -14.67841 -14.30722 -14.27014 -13.94096 -13.76157 -13.49020 -13.30332 -13.09719 -13.03833 -12.84687 -12.45601 -12.35169 -12.24741 -12.11495 -11.78928 -11.59499 -11.56328 -11.22182 -11.01944 -10.93766 -10.83029 -10.55355 -10.46691 -10.18685 -10.10895 -9.89791 -9.72965 -9.55449 -9.50515 -9.39761 -8.93844 -8.65010 -8.49833 -6.68739 -5.82700 -3.25551 1.38100 2.08848 2.15304 3.32300 3.40262 3.41743 3.42807 3.55425 4.14428 4.43708 4.44604 4.67761 4.80820 4.98321 5.05357 5.07148 5.19720 5.25791 5.30673 5.35658 5.39518 5.45769 5.50859 5.56405 5.60402 5.72079 5.75726 5.89014 5.90371 6.04846 6.09682 6.17617 6.19711 6.25662 6.28601 6.37319 6.41533 6.54022 6.58811 6.59931 6.69608 6.73474 6.83003 6.87914 6.99600 7.39022 7.42894 7.65293 7.74469 7.77086 8.41024 8.46719 9.17204 9.81096 10.38189 11.25358 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.003159 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.708917 B = 8861.206458 C =10695.832185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 C 0.135 3.865 4 N -0.304 5.304 5 N -0.363 5.363 6 C 0.097 3.903 7 C 0.101 3.899 8 C -0.286 4.286 9 C 0.594 3.406 10 O -0.546 6.546 11 N -0.720 5.720 12 C 0.153 3.847 13 H 0.082 0.918 14 C -0.164 4.164 15 C -0.113 4.113 16 H 0.071 0.929 17 C -0.100 4.100 18 C -0.142 4.142 19 C 0.170 3.830 20 N -0.591 5.591 21 C -0.253 4.253 22 H 0.064 0.936 23 C 0.003 3.997 24 N -0.900 5.900 25 Si 0.900 3.100 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.289 1.289 29 C 0.152 3.848 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.184 0.816 39 H 0.397 0.603 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.017 0.983 48 H 0.085 0.915 49 H 0.253 0.747 50 H 0.045 0.955 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.759 -9.381 -14.925 18.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.086 4.086 3 C -0.033 4.033 4 N -0.125 5.125 5 N -0.140 5.140 6 C -0.044 4.044 7 C -0.051 4.051 8 C -0.301 4.301 9 C 0.381 3.619 10 O -0.425 6.425 11 N -0.371 5.371 12 C 0.048 3.952 13 H 0.100 0.900 14 C -0.222 4.222 15 C -0.134 4.134 16 H 0.089 0.911 17 C -0.138 4.138 18 C -0.182 4.182 19 C 0.044 3.956 20 N -0.314 5.314 21 C -0.383 4.383 22 H 0.081 0.919 23 C -0.196 4.196 24 N -0.545 5.545 25 Si 0.730 3.270 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.216 1.216 29 C 0.026 3.974 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.201 0.799 39 H 0.232 0.768 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.035 0.965 48 H 0.103 0.897 49 H 0.063 0.937 50 H 0.063 0.937 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.961 -9.847 -15.994 19.195 hybrid contribution 0.980 1.497 0.630 1.897 sum -2.981 -8.350 -15.364 17.739 Atomic orbital electron populations 1.21608 0.94065 1.01934 1.01954 1.20102 0.96456 0.88081 1.03957 1.22447 0.95248 0.96819 0.88765 1.77169 1.22090 0.90549 1.22719 1.48293 1.49180 1.11778 1.04789 1.21999 1.01745 0.86014 0.94683 1.23183 0.97564 0.99055 0.85270 1.20319 1.19495 0.95501 0.94740 1.17215 0.76764 0.84502 0.83402 1.90712 1.47235 1.20270 1.84262 1.46026 1.67700 1.17131 1.06203 1.20991 0.95575 0.99391 0.79249 0.89977 1.22256 0.96187 1.02405 1.01392 1.21949 0.98620 0.97797 0.94987 0.91050 1.21419 1.00044 0.97943 0.94441 1.22180 0.98687 0.99613 0.97681 1.20785 0.99488 0.89235 0.86074 1.44031 1.52529 1.28496 1.06326 1.19175 1.28309 0.94967 0.95808 0.91851 1.25036 0.99665 0.97118 0.97760 1.70046 1.40622 1.34084 1.09708 0.86265 0.81703 0.81270 0.77743 1.20343 1.21764 1.21560 1.20989 0.93781 0.88939 0.93739 0.92103 0.93128 0.92003 0.90874 0.88051 0.90210 0.88968 0.88878 0.79869 0.76821 0.91745 0.92827 0.91549 0.92238 0.93513 0.93256 0.92847 0.96453 0.89667 0.93678 0.93663 0.95623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.89 37.16 0.37 -1.09 16 2 C -0.05 -0.54 5.97 -27.89 -0.17 -0.71 16 3 C 0.13 1.78 6.52 -82.02 -0.53 1.24 16 4 N -0.30 -3.92 12.50 33.89 0.42 -3.50 16 5 N -0.36 -3.76 3.98 -67.60 -0.27 -4.03 16 6 C 0.10 0.56 11.44 59.84 0.68 1.25 16 7 C 0.10 1.05 10.99 -16.56 -0.18 0.87 16 8 C -0.29 -3.73 6.13 -105.06 -0.64 -4.37 16 9 C 0.59 8.60 7.78 -12.52 -0.10 8.50 16 10 O -0.55 -9.20 14.58 5.27 0.08 -9.13 16 11 N -0.72 -9.64 5.00 -54.88 -0.27 -9.92 16 12 C 0.15 2.19 2.35 -67.93 -0.16 2.03 16 13 H 0.08 1.26 7.58 -51.93 -0.39 0.86 16 14 C -0.16 -2.30 8.76 37.16 0.33 -1.97 16 15 C -0.11 -1.82 2.27 -90.50 -0.21 -2.03 16 16 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 17 C -0.10 -1.63 4.89 -26.69 -0.13 -1.76 16 18 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 19 C 0.17 3.92 5.30 -3.71 -0.02 3.90 16 20 N -0.59 -14.03 2.99 -172.32 -0.52 -14.54 16 21 C -0.25 -6.61 9.58 -15.06 -0.14 -6.75 16 22 H 0.06 1.61 7.89 -52.48 -0.41 1.19 16 23 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 24 N -0.90 -25.45 11.20 55.49 0.62 -24.83 16 25 Si 0.90 20.95 29.59 -169.99 -5.03 15.92 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.15 2.90 5.26 -3.71 -0.02 2.88 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.30 6.56 -51.93 -0.34 0.96 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.35 8.14 -51.92 -0.42 -0.08 16 38 H 0.18 1.35 7.46 -52.49 -0.39 0.96 16 39 H 0.40 4.77 6.20 -40.82 -0.25 4.51 16 40 H 0.06 0.93 6.23 -51.93 -0.32 0.60 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.89 6.60 -51.93 -0.34 0.55 16 43 H 0.06 0.95 6.63 -51.93 -0.34 0.61 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 2.22 6.06 -51.93 -0.31 1.91 16 49 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 50 H 0.04 0.81 6.75 -51.93 -0.35 0.46 16 51 H 0.03 0.51 6.06 -51.93 -0.31 0.19 16 LS Contribution 397.46 15.07 5.99 5.99 Total: -1.00 -32.40 397.46 -8.56 -40.97 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.41 Total: 3.88 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.17 Total: -0.80 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.01 Total: -56.82 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.40 -8.56 -40.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025452410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.063 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds