Wall clock time and date at job start Tue Mar 31 2020 18:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47281 * 2 1 4 4 N 1.30456 * 125.98658 * 270.20808 * 3 2 1 5 5 N 1.39942 * 108.89551 * 180.26293 * 4 3 2 6 6 C 1.46496 * 125.75317 * 179.69280 * 5 4 3 7 7 C 1.34261 * 108.49074 * 359.71811 * 5 4 3 8 8 C 1.38049 * 107.41734 * 359.97438 * 7 5 4 9 9 C 1.47431 * 126.41356 * 180.02562 * 8 7 5 10 10 O 1.21607 * 120.00019 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00067 * 359.74248 * 9 8 7 12 12 C 1.46497 * 119.99887 * 180.27479 * 11 9 8 13 13 H 1.09002 * 109.46869 * 35.00672 * 12 11 9 14 14 C 1.52995 * 109.47371 * 275.00187 * 12 11 9 15 15 C 1.53005 * 109.46904 * 155.00083 * 12 11 9 16 16 H 1.08999 * 109.49692 * 305.06728 * 15 12 11 17 17 C 1.53038 * 109.49578 * 185.00033 * 15 12 11 18 18 C 1.53051 * 109.53503 * 178.68560 * 17 15 12 19 19 C 1.53187 * 109.31249 * 61.36505 * 18 17 15 20 20 N 1.46928 * 108.77713 * 305.36750 * 19 18 17 21 21 C 1.36939 * 120.62566 * 233.58546 * 20 19 18 22 22 H 1.08003 * 119.99311 * 151.83445 * 21 20 19 23 23 C 1.38808 * 120.00435 * 331.83207 * 21 20 19 24 24 N 1.31623 * 119.99684 * 343.07758 * 23 21 20 25 25 Si 1.86796 * 120.00156 * 163.07607 * 23 21 20 26 26 H 1.48495 * 109.47101 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47118 * 120.00097 * 25 23 21 28 28 H 1.48499 * 109.47103 * 240.00233 * 25 23 21 29 29 C 1.46926 * 118.73869 * 53.60488 * 20 19 18 30 30 H 1.09004 * 109.47308 * 300.00102 * 1 2 3 31 31 H 1.09004 * 109.46923 * 59.99944 * 1 2 3 32 32 H 1.09000 * 109.47583 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46956 * 239.99487 * 2 1 3 34 34 H 1.09004 * 109.46923 * 120.00056 * 2 1 3 35 35 H 1.08994 * 109.47088 * 270.02360 * 6 5 4 36 36 H 1.08990 * 109.47260 * 30.02936 * 6 5 4 37 37 H 1.09007 * 109.46999 * 150.02785 * 6 5 4 38 38 H 1.08000 * 126.28939 * 180.02562 * 7 5 4 39 39 H 0.97001 * 119.99890 * 0.28116 * 11 9 8 40 40 H 1.08994 * 109.47226 * 299.99906 * 14 12 11 41 41 H 1.09000 * 109.47286 * 60.00350 * 14 12 11 42 42 H 1.09005 * 109.47204 * 179.97438 * 14 12 11 43 43 H 1.08999 * 109.46609 * 298.70455 * 17 15 12 44 44 H 1.09003 * 109.46101 * 58.68337 * 17 15 12 45 45 H 1.08995 * 109.49411 * 181.32119 * 18 17 15 46 46 H 1.09000 * 109.49474 * 301.38087 * 18 17 15 47 47 H 1.09005 * 109.58394 * 65.15063 * 19 18 17 48 48 H 1.09000 * 109.58764 * 185.57243 * 19 18 17 49 49 H 0.96998 * 119.99593 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.58468 * 186.60310 * 29 20 19 51 51 H 1.09002 * 109.58486 * 66.18685 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2842 2.1447 -1.0556 5 7 2.7373 3.4033 -0.6443 6 6 3.1313 4.5023 -1.5292 7 6 2.7504 3.4334 0.6979 8 6 2.3086 2.2037 1.1432 9 6 2.1593 1.7838 2.5485 10 8 1.7580 0.6660 2.8097 11 7 2.4730 2.6368 3.5437 12 6 2.3304 2.2174 4.9401 13 1 2.5761 1.1592 5.0285 14 6 0.8881 2.4461 5.3966 15 6 3.2791 3.0362 5.8179 16 1 4.2965 2.9448 5.4377 17 6 3.2223 2.5150 7.2557 18 6 4.1953 3.3121 8.1278 19 6 3.7809 4.7868 8.1314 20 7 3.6922 5.2565 6.7420 21 6 4.3772 6.3711 6.3373 22 1 4.6916 6.4677 5.3086 23 6 4.6673 7.3767 7.2492 24 7 4.0197 7.4342 8.3936 25 14 5.9768 8.6483 6.8521 26 1 6.5521 8.3647 5.5128 27 1 5.3677 10.0026 6.8520 28 1 7.0511 8.5887 7.8756 29 6 2.8544 4.5079 5.7953 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.1959 4.4270 -1.7502 36 1 2.5625 4.4435 -2.4570 37 1 2.9286 5.4544 -1.0385 38 1 3.0506 4.2669 1.3156 39 1 2.7932 3.5285 3.3353 40 1 0.6425 3.5044 5.3082 41 1 0.2123 1.8628 4.7712 42 1 0.7819 2.1337 6.4354 43 1 2.2101 2.6290 7.6436 44 1 3.5007 1.4613 7.2712 45 1 4.1715 2.9249 9.1464 46 1 5.2043 3.2181 7.7263 47 1 2.8100 4.8924 8.6154 48 1 4.5253 5.3742 8.6689 49 1 4.2227 8.1367 9.0309 50 1 2.9874 4.9113 4.7915 51 1 1.8079 4.5908 6.0889 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025452410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:15 Heat of formation + Delta-G solvation = 24.476829 kcal Electronic energy + Delta-G solvation = -29768.577743 eV Core-core repulsion = 25896.737160 eV Total energy + Delta-G solvation = -3871.840582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -42.44439 -40.66833 -39.24491 -36.63585 -35.58776 -34.62619 -33.05418 -32.39255 -32.21788 -30.99269 -29.36526 -27.78280 -27.18303 -25.55068 -24.54476 -23.86837 -23.30709 -22.13679 -21.05268 -20.65755 -19.96452 -18.79754 -18.39642 -17.13847 -16.81245 -16.74254 -16.51646 -15.98902 -15.64751 -15.63676 -15.47118 -15.17742 -15.01342 -14.82272 -14.64023 -14.13890 -13.98996 -13.90868 -13.75719 -13.55243 -13.49023 -13.25778 -12.99666 -12.87976 -12.76704 -12.66312 -12.42700 -12.22038 -12.09135 -11.99554 -11.90838 -11.74844 -11.61916 -11.45546 -11.21210 -11.02578 -10.71749 -10.49114 -10.38484 -10.03785 -9.58484 -8.60871 -7.82652 -5.27685 0.53269 1.11980 1.45912 1.47779 1.50770 1.59776 2.34577 2.50613 2.54100 3.32418 3.36563 3.63631 3.70531 3.96716 4.02590 4.05620 4.10804 4.23051 4.27081 4.40160 4.41448 4.43261 4.48673 4.51093 4.53933 4.65436 4.70288 4.71954 4.73896 4.75451 4.90587 4.95827 5.04106 5.05418 5.11124 5.18691 5.20350 5.27224 5.31382 5.34822 5.39735 5.51510 5.53604 5.60263 5.66362 5.73007 5.83213 5.89489 6.43498 6.52736 6.73129 7.19350 7.38742 7.91691 8.43800 9.23547 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.003159 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.708917 B = 8861.206458 C =10695.832185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.046 4.046 3 C 0.121 3.879 4 N -0.327 5.327 5 N -0.359 5.359 6 C 0.086 3.914 7 C 0.116 3.884 8 C -0.316 4.316 9 C 0.595 3.405 10 O -0.575 6.575 11 N -0.714 5.714 12 C 0.163 3.837 13 H 0.079 0.921 14 C -0.158 4.158 15 C -0.096 4.096 16 H 0.066 0.934 17 C -0.098 4.098 18 C -0.131 4.131 19 C 0.174 3.826 20 N -0.609 5.609 21 C -0.256 4.256 22 H 0.072 0.928 23 C -0.052 4.052 24 N -0.936 5.936 25 Si 0.962 3.038 26 H -0.262 1.262 27 H -0.295 1.295 28 H -0.296 1.296 29 C 0.151 3.849 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.216 0.784 39 H 0.405 0.595 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.048 0.952 47 H -0.005 1.005 48 H 0.049 0.951 49 H 0.247 0.753 50 H 0.056 0.944 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.225 -9.466 -16.623 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.086 4.086 3 C -0.046 4.046 4 N -0.148 5.148 5 N -0.136 5.136 6 C -0.053 4.053 7 C -0.037 4.037 8 C -0.331 4.331 9 C 0.384 3.616 10 O -0.456 6.456 11 N -0.365 5.365 12 C 0.058 3.942 13 H 0.097 0.903 14 C -0.216 4.216 15 C -0.117 4.117 16 H 0.084 0.916 17 C -0.136 4.136 18 C -0.170 4.170 19 C 0.049 3.951 20 N -0.332 5.332 21 C -0.386 4.386 22 H 0.090 0.910 23 C -0.248 4.248 24 N -0.582 5.582 25 Si 0.791 3.209 26 H -0.186 1.186 27 H -0.222 1.222 28 H -0.223 1.223 29 C 0.026 3.974 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.233 0.767 39 H 0.241 0.759 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.013 0.987 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.075 0.925 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.423 -9.936 -17.746 20.624 hybrid contribution 0.798 1.559 1.095 2.066 sum -2.625 -8.377 -16.651 18.823 Atomic orbital electron populations 1.21541 0.93447 1.02743 1.01059 1.20092 0.96961 0.87788 1.03713 1.22665 0.95485 0.97414 0.89057 1.77108 1.22929 0.91810 1.22986 1.48684 1.47810 1.11716 1.05385 1.22405 1.02654 0.85627 0.94647 1.23610 0.95644 0.98858 0.85610 1.20303 1.21915 0.96959 0.93898 1.17410 0.76094 0.84074 0.84065 1.90692 1.48664 1.21515 1.84763 1.45914 1.67560 1.17389 1.05633 1.20794 0.95215 0.98711 0.79481 0.90300 1.22194 0.95749 1.01953 1.01723 1.21725 0.98591 0.95864 0.95516 0.91566 1.21415 0.99557 0.98921 0.93706 1.22013 0.98893 0.96652 0.99467 1.20598 0.97229 0.91674 0.85638 1.44295 1.53349 1.28515 1.07042 1.19570 1.27696 0.95286 0.96080 0.91025 1.25764 1.01735 0.99338 0.97919 1.70201 1.42353 1.34904 1.10775 0.85281 0.79051 0.78659 0.77905 1.18641 1.22230 1.22295 1.21123 0.92845 0.90220 0.93192 0.93992 0.92829 0.90379 0.89708 0.89556 0.88842 0.88426 0.86230 0.76726 0.75905 0.92225 0.93174 0.90896 0.91885 0.90910 0.91482 0.93281 0.98685 0.93269 0.94350 0.92530 0.95988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.89 71.98 0.71 -2.00 16 2 C -0.05 -1.07 5.97 29.84 0.18 -0.89 16 3 C 0.12 3.11 6.52 43.51 0.28 3.40 16 4 N -0.33 -8.02 12.50 -46.68 -0.58 -8.60 16 5 N -0.36 -6.62 3.98 -367.79 -1.46 -8.08 16 6 C 0.09 0.74 11.44 127.77 1.46 2.21 16 7 C 0.12 2.14 10.99 84.28 0.93 3.07 16 8 C -0.32 -7.88 6.13 -20.15 -0.12 -8.00 16 9 C 0.59 16.68 7.78 86.66 0.67 17.35 16 10 O -0.58 -19.26 14.58 -4.05 -0.06 -19.32 16 11 N -0.71 -17.91 5.00 -445.80 -2.23 -20.14 16 12 C 0.16 4.39 2.35 44.99 0.11 4.50 16 13 H 0.08 2.26 7.58 -2.39 -0.02 2.24 16 14 C -0.16 -4.18 8.76 71.98 0.63 -3.55 16 15 C -0.10 -2.92 2.27 -10.72 -0.02 -2.95 16 16 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 17 C -0.10 -2.96 4.89 30.62 0.15 -2.81 16 18 C -0.13 -4.71 6.08 30.67 0.19 -4.53 16 19 C 0.17 8.15 5.30 86.36 0.46 8.60 16 20 N -0.61 -28.67 2.99 -699.09 -2.09 -30.76 16 21 C -0.26 -13.24 9.58 84.03 0.81 -12.44 16 22 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 23 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 24 N -0.94 -54.16 11.20 21.65 0.24 -53.92 16 25 Si 0.96 43.14 29.59 68.60 2.03 45.17 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 28 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 29 C 0.15 5.56 5.26 86.36 0.45 6.02 16 30 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.09 2.25 6.56 -2.38 -0.02 2.23 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 38 H 0.22 2.38 7.46 -2.91 -0.02 2.36 16 39 H 0.40 8.77 6.20 -92.71 -0.58 8.20 16 40 H 0.06 1.63 6.23 -2.39 -0.01 1.61 16 41 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.82 6.60 -2.38 -0.02 1.81 16 43 H 0.06 1.88 6.63 -2.39 -0.02 1.87 16 44 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 48 H 0.05 2.64 6.06 -2.39 -0.01 2.63 16 49 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 50 H 0.06 1.92 6.75 -2.39 -0.02 1.90 16 51 H 0.02 0.85 6.06 -2.39 -0.01 0.83 16 Total: -1.00 -71.10 397.46 3.49 -67.61 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.35 Total: 22.47 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 7.30 Total: 5.57 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -6.13 Total: -121.50 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.06 Total: -19.32 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -71.10 3.49 -67.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025452410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.090 kcal (2) G-P(sol) polarization free energy of solvation -71.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds