Wall clock time and date at job start Tue Mar 31 2020 19:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47099 * 2 1 4 4 C 1.50702 * 109.47301 * 179.97438 * 3 2 1 5 5 N 1.30442 * 125.99120 * 270.00312 * 4 3 2 6 6 N 1.39933 * 108.89834 * 179.97438 * 5 4 3 7 7 H 0.97009 * 125.75608 * 179.97438 * 6 5 4 8 8 C 1.34261 * 108.49234 * 359.74424 * 6 5 4 9 9 C 1.38041 * 107.41663 * 0.39945 * 8 6 5 10 10 C 1.47422 * 126.41843 * 179.86618 * 9 8 6 11 11 O 1.21602 * 120.00528 * 179.68658 * 10 9 8 12 12 N 1.34780 * 119.99780 * 359.69095 * 10 9 8 13 13 C 1.46498 * 120.00111 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47393 * 34.99295 * 13 12 10 15 15 C 1.53010 * 109.47026 * 274.99749 * 13 12 10 16 16 C 1.52997 * 109.47549 * 155.00047 * 13 12 10 17 17 H 1.08993 * 109.52774 * 60.07492 * 16 13 12 18 18 C 1.53036 * 109.50173 * 180.16380 * 16 13 12 19 19 C 1.53349 * 109.60956 * 181.32364 * 18 16 13 20 20 C 1.53194 * 109.14721 * 298.70862 * 19 18 16 21 21 N 1.46924 * 108.89447 * 54.57940 * 20 19 18 22 22 C 1.36930 * 120.63300 * 126.34039 * 21 20 19 23 23 H 1.07996 * 120.00049 * 331.82927 * 22 21 20 24 24 C 1.38816 * 120.00324 * 151.82723 * 22 21 20 25 25 N 1.31624 * 119.99356 * 343.06571 * 24 22 21 26 26 Si 1.86793 * 120.00395 * 163.06593 * 24 22 21 27 27 H 1.48500 * 109.46960 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47338 * 119.99948 * 26 24 22 29 29 H 1.48503 * 109.47085 * 239.99957 * 26 24 22 30 30 C 1.46929 * 118.73622 * 306.31812 * 21 20 19 31 31 H 1.08995 * 109.46887 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46965 * 300.00248 * 1 2 3 33 33 H 1.09000 * 109.46930 * 60.00127 * 1 2 3 34 34 H 1.09001 * 109.47551 * 239.99667 * 2 1 3 35 35 H 1.09006 * 109.46991 * 119.99426 * 2 1 3 36 36 H 1.09005 * 109.47102 * 60.00199 * 3 2 1 37 37 H 1.09000 * 109.47126 * 299.99753 * 3 2 1 38 38 H 1.07997 * 126.29394 * 180.24381 * 8 6 5 39 39 H 0.97000 * 120.00253 * 359.97438 * 12 10 9 40 40 H 1.08996 * 109.47183 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.46664 * 299.99993 * 15 13 12 42 42 H 1.08996 * 109.46887 * 59.99665 * 15 13 12 43 43 H 1.08998 * 109.45668 * 301.33137 * 18 16 13 44 44 H 1.09000 * 109.46285 * 61.30372 * 18 16 13 45 45 H 1.08999 * 109.68685 * 178.74542 * 19 18 16 46 46 H 1.08997 * 109.47481 * 58.54432 * 19 18 16 47 47 H 1.08999 * 109.58554 * 294.71486 * 20 19 18 48 48 H 1.09001 * 109.58356 * 174.43691 * 20 19 18 49 49 H 0.96997 * 119.99488 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.58736 * 173.39352 * 30 21 20 51 51 H 1.08995 * 109.58640 * 293.68128 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3131 1.4427 1.0564 6 7 5.6508 1.4421 0.6456 7 1 6.4238 1.4424 1.2318 8 6 5.6842 1.4359 -0.6965 9 6 4.3778 1.4417 -1.1423 10 6 3.9326 1.4409 -2.5477 11 8 2.7450 1.4408 -2.8094 12 7 4.8418 1.4402 -3.5426 13 6 4.3995 1.4400 -4.9392 14 1 3.4875 2.0296 -5.0316 15 6 4.1251 0.0028 -5.3870 16 6 5.4920 2.0488 -5.8204 17 1 6.4041 1.4590 -5.7298 18 6 5.0289 2.0526 -7.2790 19 6 6.1353 2.6320 -8.1688 20 6 6.4165 4.0769 -7.7442 21 7 6.7217 4.0996 -6.3072 22 6 7.8734 4.6804 -5.8476 23 1 8.7495 4.7152 -6.4782 24 6 7.9151 5.2244 -4.5712 25 7 6.7954 5.4876 -3.9313 26 14 9.5599 5.5828 -3.7617 27 1 10.6592 5.1987 -4.6833 28 1 9.6549 7.0324 -3.4542 29 1 9.6733 4.8015 -2.5039 30 6 5.7672 3.4878 -5.3726 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 6.5703 1.4302 -1.3140 39 1 5.7891 1.4406 -3.3340 40 1 3.7956 0.0027 -6.4260 41 1 5.0371 -0.5868 -5.2946 42 1 3.3468 -0.4310 -4.7593 43 1 4.8088 1.0322 -7.5927 44 1 4.1309 2.6632 -7.3734 45 1 5.8155 2.6148 -9.2106 46 1 7.0414 2.0368 -8.0560 47 1 5.5393 4.6930 -7.9414 48 1 7.2678 4.4632 -8.3047 49 1 6.8245 5.8681 -3.0395 50 1 6.1910 3.4832 -4.3683 51 1 4.8379 4.0574 -5.3744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025462234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:14 Heat of formation + Delta-G solvation = 9.851471 kcal Electronic energy + Delta-G solvation = -30218.409625 eV Core-core repulsion = 26345.934840 eV Total energy + Delta-G solvation = -3872.474786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.44142 -40.55147 -39.14920 -36.63083 -36.03601 -34.75322 -33.05358 -32.56115 -31.71554 -30.92590 -29.86457 -28.03844 -27.06806 -25.20217 -23.89696 -23.63410 -22.89435 -21.96275 -21.21789 -20.80054 -20.36672 -19.29178 -18.62721 -17.47849 -16.88485 -16.69768 -16.21942 -16.04685 -15.79491 -15.49055 -15.34316 -15.11884 -14.91165 -14.83683 -14.63456 -14.22980 -14.04923 -13.97423 -13.91874 -13.63186 -13.28984 -12.93873 -12.89990 -12.66730 -12.59186 -12.45330 -12.30182 -12.16054 -12.06039 -12.00111 -11.93126 -11.66362 -11.54729 -11.44464 -11.18681 -11.02166 -10.69787 -10.52643 -10.51772 -10.03716 -9.68249 -8.62401 -7.82151 -5.28908 0.53886 1.09760 1.45049 1.50207 1.59842 1.77761 2.37935 2.53471 2.55024 3.29305 3.44519 3.62755 3.72203 4.01564 4.10892 4.14182 4.16288 4.19568 4.23182 4.34774 4.37653 4.40978 4.55317 4.57634 4.61242 4.73203 4.82948 4.84588 4.89265 4.90784 4.96093 5.02642 5.09933 5.10794 5.13863 5.20469 5.24960 5.33183 5.34935 5.43254 5.43988 5.47635 5.53623 5.61042 5.67222 5.75567 5.86006 6.22681 6.42710 6.48318 6.74860 7.19033 7.41703 7.90628 8.43489 9.22370 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.003995 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.490691 B = 7007.009974 C = 8949.973086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.043 4.043 4 C 0.125 3.875 5 N -0.319 5.319 6 N -0.448 5.448 7 H 0.459 0.541 8 C 0.128 3.872 9 C -0.314 4.314 10 C 0.592 3.408 11 O -0.577 6.577 12 N -0.710 5.710 13 C 0.158 3.842 14 H 0.056 0.944 15 C -0.149 4.149 16 C -0.103 4.103 17 H 0.074 0.926 18 C -0.101 4.101 19 C -0.121 4.121 20 C 0.134 3.866 21 N -0.611 5.611 22 C -0.261 4.261 23 H 0.064 0.936 24 C -0.044 4.044 25 N -0.930 5.930 26 Si 0.961 3.039 27 H -0.269 1.269 28 H -0.301 1.301 29 H -0.281 1.281 30 C 0.193 3.807 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.216 0.784 39 H 0.403 0.597 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.004 0.996 48 H 0.050 0.950 49 H 0.247 0.753 50 H 0.066 0.934 51 H -0.026 1.026 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 -14.360 4.371 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.082 4.082 4 C -0.043 4.043 5 N -0.142 5.142 6 N -0.153 5.153 7 H 0.308 0.692 8 C -0.027 4.027 9 C -0.329 4.329 10 C 0.381 3.619 11 O -0.458 6.458 12 N -0.360 5.360 13 C 0.053 3.947 14 H 0.074 0.926 15 C -0.207 4.207 16 C -0.124 4.124 17 H 0.093 0.907 18 C -0.139 4.139 19 C -0.160 4.160 20 C 0.008 3.992 21 N -0.334 5.334 22 C -0.391 4.391 23 H 0.081 0.919 24 C -0.240 4.240 25 N -0.576 5.576 26 Si 0.790 3.210 27 H -0.194 1.194 28 H -0.229 1.229 29 H -0.207 1.207 30 C 0.067 3.933 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.232 0.768 39 H 0.239 0.761 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.022 0.978 48 H 0.068 0.932 49 H 0.056 0.944 50 H 0.084 0.916 51 H -0.008 1.008 Dipole moment (debyes) X Y Z Total from point charges -4.275 -14.269 5.590 15.910 hybrid contribution 1.643 1.092 0.054 1.973 sum -2.632 -13.177 5.643 14.574 Atomic orbital electron populations 1.21713 0.94055 1.02378 1.02112 1.21277 0.97015 0.94347 1.01325 1.20195 0.85164 0.99374 1.03517 1.22638 0.97634 0.95096 0.88958 1.77047 0.87334 1.27224 1.22560 1.46098 1.07588 1.56012 1.05651 0.69249 1.23597 0.99193 0.93936 0.85951 1.20371 0.93436 1.24975 0.94103 1.17425 0.85375 0.74906 0.84234 1.90674 1.17491 1.52888 1.84794 1.45813 1.09660 1.74685 1.05805 1.20838 0.96894 0.97233 0.79742 0.92559 1.22103 1.01923 0.94618 1.02022 1.21901 0.97341 0.97496 0.95620 0.90737 1.21519 0.97639 1.01449 0.93254 1.21923 0.98759 0.96168 0.99116 1.21120 0.97263 0.95664 0.85104 1.44363 1.22149 1.65250 1.01670 1.19513 0.89604 1.30664 0.99313 0.91854 1.25719 0.99384 0.98825 1.00069 1.70243 1.26583 1.47175 1.13572 0.85305 0.80448 0.76657 0.78594 1.19350 1.22906 1.20693 1.20527 0.89715 0.88679 0.94359 0.91553 0.91691 0.93131 0.93259 0.91869 0.89826 0.90055 0.76763 0.76138 0.90003 0.91287 0.93478 0.89467 0.93486 0.90037 0.92111 0.97824 0.93153 0.94379 0.91587 1.00843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.91 71.98 0.71 -2.14 16 2 C -0.10 -2.42 5.92 30.59 0.18 -2.23 16 3 C -0.04 -1.19 5.25 29.85 0.16 -1.04 16 4 C 0.12 3.74 6.52 43.52 0.28 4.02 16 5 N -0.32 -8.86 12.63 -46.67 -0.59 -9.45 16 6 N -0.45 -9.49 7.29 -56.32 -0.41 -9.90 16 7 H 0.46 6.09 8.96 -213.42 -1.91 4.18 16 8 C 0.13 2.92 11.52 84.27 0.97 3.89 16 9 C -0.31 -9.48 6.13 -20.15 -0.12 -9.60 16 10 C 0.59 20.25 7.78 86.66 0.67 20.93 16 11 O -0.58 -22.78 14.58 -4.04 -0.06 -22.84 16 12 N -0.71 -22.05 4.47 -445.80 -1.99 -24.04 16 13 C 0.16 4.97 2.16 44.99 0.10 5.06 16 14 H 0.06 2.11 7.58 -2.39 -0.02 2.09 16 15 C -0.15 -3.68 9.14 71.99 0.66 -3.02 16 16 C -0.10 -3.48 1.98 -10.72 -0.02 -3.50 16 17 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 18 C -0.10 -2.98 4.86 30.72 0.15 -2.83 16 19 C -0.12 -3.71 6.11 30.78 0.19 -3.53 16 20 C 0.13 5.45 6.50 86.36 0.56 6.01 16 21 N -0.61 -29.73 2.99 -699.08 -2.09 -31.83 16 22 C -0.26 -13.81 9.58 84.04 0.81 -13.01 16 23 H 0.06 3.30 7.88 -2.91 -0.02 3.28 16 24 C -0.04 -2.36 4.92 84.86 0.42 -1.95 16 25 N -0.93 -53.13 11.20 21.65 0.24 -52.89 16 26 Si 0.96 42.45 29.59 68.60 2.03 44.48 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 29 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 30 C 0.19 8.85 4.34 86.37 0.37 9.22 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.08 2.60 6.56 -2.39 -0.02 2.58 16 38 H 0.22 3.45 7.46 -2.91 -0.02 3.43 16 39 H 0.40 11.18 7.34 -92.71 -0.68 10.50 16 40 H 0.08 1.75 6.41 -2.39 -0.02 1.74 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 2.02 6.37 -2.39 -0.02 2.00 16 44 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 48 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 49 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 50 H 0.07 3.30 5.56 -2.39 -0.01 3.28 16 51 H -0.03 -1.42 8.14 -2.39 -0.02 -1.44 16 Total: -1.00 -71.32 401.01 1.56 -69.76 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -1.66 Total: 30.40 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 6.09 Total: 6.30 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -4.84 Total: -128.10 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.06 Total: -22.84 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -71.32 1.56 -69.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025462234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.614 kcal (2) G-P(sol) polarization free energy of solvation -71.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds