Wall clock time and date at job start Tue Mar 31 2020 19:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47308 * 2 1 4 4 C 1.50700 * 109.47073 * 180.02562 * 3 2 1 5 5 N 1.30445 * 125.99177 * 270.04012 * 4 3 2 6 6 N 1.39932 * 108.89678 * 179.97438 * 5 4 3 7 7 H 0.97001 * 125.74982 * 180.02562 * 6 5 4 8 8 C 1.34255 * 108.49177 * 359.75634 * 6 5 4 9 9 C 1.38042 * 107.42076 * 0.39115 * 8 6 5 10 10 C 1.47429 * 126.41902 * 179.87058 * 9 8 6 11 11 O 1.21595 * 119.99955 * 179.68512 * 10 9 8 12 12 N 1.34769 * 119.99555 * 359.69013 * 10 9 8 13 13 C 1.46504 * 119.99988 * 179.97438 * 12 10 9 14 14 H 1.09009 * 109.46868 * 325.00107 * 13 12 10 15 15 C 1.53006 * 109.47168 * 84.99697 * 13 12 10 16 16 C 1.52996 * 109.47658 * 204.99952 * 13 12 10 17 17 H 1.09008 * 109.52458 * 59.91480 * 16 13 12 18 18 C 1.53032 * 109.50284 * 179.97438 * 16 13 12 19 19 C 1.53036 * 109.54377 * 181.31688 * 18 16 13 20 20 C 1.53193 * 109.31010 * 298.64027 * 19 18 16 21 21 N 1.46918 * 108.89691 * 54.56088 * 20 19 18 22 22 C 1.36934 * 120.63246 * 126.46826 * 21 20 19 23 23 H 1.07998 * 119.99994 * 331.91164 * 22 21 20 24 24 C 1.38810 * 120.00388 * 151.91331 * 22 21 20 25 25 N 1.31626 * 119.99638 * 343.17136 * 24 22 21 26 26 Si 1.86793 * 120.00463 * 163.16956 * 24 22 21 27 27 H 1.48501 * 109.47077 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47046 * 119.99803 * 26 24 22 29 29 H 1.48496 * 109.47392 * 239.99957 * 26 24 22 30 30 C 1.46962 * 118.71629 * 306.64210 * 21 20 19 31 31 H 1.08992 * 109.47515 * 59.99395 * 1 2 3 32 32 H 1.09000 * 109.47169 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46584 * 299.99302 * 1 2 3 34 34 H 1.09008 * 109.46812 * 240.00457 * 2 1 3 35 35 H 1.08995 * 109.47836 * 120.01015 * 2 1 3 36 36 H 1.09000 * 109.46729 * 60.00787 * 3 2 1 37 37 H 1.08999 * 109.46952 * 300.00740 * 3 2 1 38 38 H 1.08002 * 126.29091 * 180.24242 * 8 6 5 39 39 H 0.96999 * 120.00782 * 0.02562 * 12 10 9 40 40 H 1.09002 * 109.47005 * 300.00551 * 15 13 12 41 41 H 1.09002 * 109.46606 * 60.00158 * 15 13 12 42 42 H 1.09001 * 109.46964 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.46038 * 61.29238 * 18 16 13 44 44 H 1.09000 * 109.46265 * 301.34033 * 18 16 13 45 45 H 1.08998 * 109.49983 * 178.68458 * 19 18 16 46 46 H 1.09002 * 109.52122 * 58.60233 * 19 18 16 47 47 H 1.09005 * 109.58538 * 174.42044 * 20 19 18 48 48 H 1.09006 * 109.58252 * 294.69757 * 20 19 18 49 49 H 0.97000 * 119.99586 * 180.02562 * 25 24 22 50 50 H 1.09007 * 109.46655 * 293.57470 * 30 21 20 51 51 H 1.08995 * 109.60064 * 173.21451 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3141 1.4415 1.0545 6 7 5.6514 1.4412 0.6426 7 1 6.4247 1.4402 1.2281 8 6 5.6835 1.4366 -0.6996 9 6 4.3767 1.4429 -1.1443 10 6 3.9304 1.4436 -2.5494 11 8 2.7427 1.4437 -2.8100 12 7 4.8388 1.4440 -3.5449 13 6 4.3953 1.4441 -4.9413 14 1 3.4830 0.8544 -5.0328 15 6 4.1206 2.8812 -5.3890 16 6 5.4869 0.8349 -5.8233 17 1 5.6843 -0.1885 -5.5040 18 6 5.0241 0.8342 -7.2819 19 6 6.1017 0.1951 -8.1607 20 6 7.3896 1.0188 -8.0625 21 7 7.7641 1.1496 -6.6478 22 6 9.0159 0.7941 -6.2217 23 1 9.5697 0.0317 -6.7493 24 6 9.5731 1.4134 -5.1114 25 7 9.0705 2.5464 -4.6684 26 14 11.0362 0.6392 -4.2459 27 1 11.4078 -0.6229 -4.9348 28 1 12.1855 1.5790 -4.2797 29 1 10.6782 0.3455 -2.8350 30 6 6.7679 1.6658 -5.6986 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5137 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8898 36 1 1.6768 1.9562 0.8901 37 1 1.6766 1.9564 -0.8899 38 1 6.5691 1.4315 -1.3178 39 1 5.7862 1.4434 -3.3371 40 1 3.3429 3.3152 -4.7607 41 1 5.0328 3.4708 -5.2975 42 1 3.7903 2.8812 -6.4278 43 1 4.8503 1.8595 -7.6083 44 1 4.0992 0.2640 -7.3691 45 1 5.7615 0.1737 -9.1960 46 1 6.2937 -0.8223 -7.8197 47 1 8.1882 0.5146 -8.6067 48 1 7.2242 2.0079 -8.4898 49 1 9.4601 2.9794 -3.8928 50 1 6.5511 2.7085 -5.9308 51 1 7.1562 1.5885 -4.6831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025462236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:29 Heat of formation + Delta-G solvation = 30.394274 kcal Electronic energy + Delta-G solvation = -30167.697614 eV Core-core repulsion = 26296.113631 eV Total energy + Delta-G solvation = -3871.583983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.41702 -39.30628 -37.76866 -35.38340 -34.79720 -33.12259 -31.68900 -31.57667 -30.16091 -29.63833 -28.07316 -27.10104 -25.35376 -24.16446 -22.84712 -22.19289 -21.93613 -20.70012 -19.83029 -19.50445 -18.76394 -18.09201 -16.85859 -16.17028 -15.54133 -15.18763 -15.04656 -14.87677 -14.43106 -14.26763 -14.00496 -13.98683 -13.71214 -13.59997 -13.20081 -13.02664 -12.97522 -12.53901 -12.36937 -12.16083 -11.97935 -11.73448 -11.53580 -11.47341 -11.28057 -11.09097 -10.98034 -10.91256 -10.64141 -10.58597 -10.44190 -10.19307 -10.13364 -9.95164 -9.61825 -9.54582 -9.44465 -9.40070 -8.87189 -8.56632 -8.53434 -6.72035 -5.88512 -3.29975 1.54514 2.19117 2.66882 3.24981 3.35668 3.38574 3.62013 3.69965 4.39951 4.45956 4.68701 5.04242 5.09757 5.12900 5.19452 5.25823 5.33354 5.41476 5.51930 5.55746 5.58166 5.60552 5.71762 5.75625 5.80717 5.84602 5.88309 5.94259 6.02942 6.10404 6.24865 6.27731 6.29755 6.32050 6.33115 6.46525 6.49162 6.50360 6.57431 6.68674 6.79892 6.87495 6.97476 7.00183 7.05934 7.27257 7.50750 7.53507 7.70884 7.97250 8.35449 8.63488 9.12728 9.75935 10.33817 11.19401 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.003800 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.093953 B = 7367.355217 C = 9258.529006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.043 4.043 4 C 0.136 3.864 5 N -0.304 5.304 6 N -0.463 5.463 7 H 0.443 0.557 8 C 0.110 3.890 9 C -0.285 4.285 10 C 0.592 3.408 11 O -0.550 6.550 12 N -0.716 5.716 13 C 0.156 3.844 14 H 0.078 0.922 15 C -0.165 4.165 16 C -0.123 4.123 17 H 0.067 0.933 18 C -0.102 4.102 19 C -0.134 4.134 20 C 0.144 3.856 21 N -0.593 5.593 22 C -0.245 4.245 23 H 0.065 0.935 24 C 0.000 4.000 25 N -0.903 5.903 26 Si 0.898 3.102 27 H -0.278 1.278 28 H -0.291 1.291 29 H -0.290 1.290 30 C 0.178 3.822 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.189 0.811 39 H 0.402 0.598 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.017 0.983 49 H 0.251 0.749 50 H 0.026 0.974 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 -2.352 6.374 12.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.082 4.082 4 C -0.032 4.032 5 N -0.126 5.126 6 N -0.167 5.167 7 H 0.288 0.712 8 C -0.043 4.043 9 C -0.300 4.300 10 C 0.380 3.620 11 O -0.429 6.429 12 N -0.367 5.367 13 C 0.051 3.949 14 H 0.096 0.904 15 C -0.223 4.223 16 C -0.144 4.144 17 H 0.086 0.914 18 C -0.140 4.140 19 C -0.173 4.173 20 C 0.017 3.983 21 N -0.315 5.315 22 C -0.375 4.375 23 H 0.083 0.917 24 C -0.197 4.197 25 N -0.549 5.549 26 Si 0.729 3.271 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.217 1.217 30 C 0.052 3.948 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.206 0.794 39 H 0.239 0.761 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.035 0.965 49 H 0.061 0.939 50 H 0.044 0.956 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.341 -2.250 7.569 13.819 hybrid contribution 2.030 -0.314 0.028 2.055 sum -9.310 -2.564 7.596 12.287 Atomic orbital electron populations 1.21730 0.95471 1.01509 1.01871 1.21361 0.95820 0.95577 1.02147 1.20199 0.85434 0.98557 1.04034 1.22430 0.96954 0.95055 0.88757 1.77108 0.86305 1.26628 1.22571 1.46090 1.07731 1.57326 1.05548 0.71227 1.23346 0.99455 0.95873 0.85614 1.20369 0.91956 1.22786 0.94902 1.17205 0.85701 0.75674 0.83456 1.90692 1.16250 1.51639 1.84332 1.46065 1.09934 1.74694 1.06037 1.20903 0.97620 0.96783 0.79558 0.90380 1.22261 1.02163 0.96882 1.00973 1.22128 0.97178 1.01000 0.94110 0.91441 1.21427 0.97231 1.00496 0.94818 1.21996 0.97348 1.00112 0.97846 1.20923 0.93945 0.96146 0.87238 1.44040 1.10260 1.75929 1.01286 1.19259 0.92603 1.14419 1.11201 0.91737 1.25005 0.98017 0.95463 1.01260 1.70068 1.43080 1.15420 1.26297 0.86277 0.82584 0.78886 0.79394 1.20297 1.21759 1.21732 1.20856 0.84822 0.93170 0.95923 0.92241 0.92855 0.92955 0.91398 0.92447 0.90876 0.87964 0.79413 0.76148 0.92963 0.91374 0.91868 0.92143 0.93470 0.93112 0.92514 0.93014 0.96474 0.93852 0.95609 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.11 -1.29 5.92 -26.73 -0.16 -1.45 16 3 C -0.04 -0.54 5.25 -27.88 -0.15 -0.69 16 4 C 0.14 1.94 6.52 -82.02 -0.53 1.41 16 5 N -0.30 -4.18 12.63 33.90 0.43 -3.75 16 6 N -0.46 -5.20 7.29 30.85 0.22 -4.98 16 7 H 0.44 3.44 8.96 -182.72 -1.64 1.80 16 8 C 0.11 1.34 11.52 -16.56 -0.19 1.15 16 9 C -0.29 -4.16 6.13 -105.06 -0.64 -4.81 16 10 C 0.59 9.60 7.78 -12.52 -0.10 9.50 16 11 O -0.55 -9.92 14.58 5.28 0.08 -9.84 16 12 N -0.72 -11.30 4.99 -54.88 -0.27 -11.57 16 13 C 0.16 2.50 2.41 -67.93 -0.16 2.34 16 14 H 0.08 1.29 7.58 -51.92 -0.39 0.89 16 15 C -0.16 -2.56 8.79 37.16 0.33 -2.24 16 16 C -0.12 -2.15 2.33 -90.50 -0.21 -2.36 16 17 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 18 C -0.10 -1.62 4.78 -26.70 -0.13 -1.74 16 19 C -0.13 -2.22 6.08 -26.61 -0.16 -2.38 16 20 C 0.14 2.88 6.51 -3.71 -0.02 2.85 16 21 N -0.59 -13.85 3.00 -172.29 -0.52 -14.37 16 22 C -0.25 -6.31 9.58 -15.06 -0.14 -6.45 16 23 H 0.06 1.66 7.88 -52.49 -0.41 1.25 16 24 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 25 N -0.90 -23.74 11.20 55.49 0.62 -23.11 16 26 Si 0.90 20.17 29.59 -169.99 -5.03 15.14 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 30 C 0.18 3.77 4.08 -3.69 -0.02 3.75 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.41 6.55 -51.93 -0.34 1.07 16 38 H 0.19 1.95 7.46 -52.49 -0.39 1.56 16 39 H 0.40 6.32 5.90 -40.82 -0.24 6.08 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 1.15 6.32 -51.93 -0.33 0.82 16 42 H 0.06 0.90 6.46 -51.93 -0.34 0.57 16 43 H 0.06 0.95 6.50 -51.93 -0.34 0.61 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.25 6.37 8.31 -40.82 -0.34 6.03 16 50 H 0.03 0.59 6.18 -51.92 -0.32 0.27 16 51 H 0.08 1.88 4.66 -51.93 -0.24 1.64 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -29.95 395.49 -10.12 -40.07 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -9.60 Total: 8.71 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.01 Total: -2.26 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.48 Total: -57.78 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.95 -10.12 -40.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025462236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.466 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds