Wall clock time and date at job start Tue Mar 31 2020 19:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47308 * 2 1 4 4 C 1.50700 * 109.47073 * 180.02562 * 3 2 1 5 5 N 1.30445 * 125.99177 * 270.04012 * 4 3 2 6 6 N 1.39932 * 108.89678 * 179.97438 * 5 4 3 7 7 H 0.97001 * 125.74982 * 180.02562 * 6 5 4 8 8 C 1.34255 * 108.49177 * 359.75634 * 6 5 4 9 9 C 1.38042 * 107.42076 * 0.39115 * 8 6 5 10 10 C 1.47429 * 126.41902 * 179.87058 * 9 8 6 11 11 O 1.21595 * 119.99955 * 179.68512 * 10 9 8 12 12 N 1.34769 * 119.99555 * 359.69013 * 10 9 8 13 13 C 1.46504 * 119.99988 * 179.97438 * 12 10 9 14 14 H 1.09009 * 109.46868 * 325.00107 * 13 12 10 15 15 C 1.53006 * 109.47168 * 84.99697 * 13 12 10 16 16 C 1.52996 * 109.47658 * 204.99952 * 13 12 10 17 17 H 1.09008 * 109.52458 * 59.91480 * 16 13 12 18 18 C 1.53032 * 109.50284 * 179.97438 * 16 13 12 19 19 C 1.53036 * 109.54377 * 181.31688 * 18 16 13 20 20 C 1.53193 * 109.31010 * 298.64027 * 19 18 16 21 21 N 1.46918 * 108.89691 * 54.56088 * 20 19 18 22 22 C 1.36934 * 120.63246 * 126.46826 * 21 20 19 23 23 H 1.07998 * 119.99994 * 331.91164 * 22 21 20 24 24 C 1.38810 * 120.00388 * 151.91331 * 22 21 20 25 25 N 1.31626 * 119.99638 * 343.17136 * 24 22 21 26 26 Si 1.86793 * 120.00463 * 163.16956 * 24 22 21 27 27 H 1.48501 * 109.47077 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47046 * 119.99803 * 26 24 22 29 29 H 1.48496 * 109.47392 * 239.99957 * 26 24 22 30 30 C 1.46962 * 118.71629 * 306.64210 * 21 20 19 31 31 H 1.08992 * 109.47515 * 59.99395 * 1 2 3 32 32 H 1.09000 * 109.47169 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46584 * 299.99302 * 1 2 3 34 34 H 1.09008 * 109.46812 * 240.00457 * 2 1 3 35 35 H 1.08995 * 109.47836 * 120.01015 * 2 1 3 36 36 H 1.09000 * 109.46729 * 60.00787 * 3 2 1 37 37 H 1.08999 * 109.46952 * 300.00740 * 3 2 1 38 38 H 1.08002 * 126.29091 * 180.24242 * 8 6 5 39 39 H 0.96999 * 120.00782 * 0.02562 * 12 10 9 40 40 H 1.09002 * 109.47005 * 300.00551 * 15 13 12 41 41 H 1.09002 * 109.46606 * 60.00158 * 15 13 12 42 42 H 1.09001 * 109.46964 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.46038 * 61.29238 * 18 16 13 44 44 H 1.09000 * 109.46265 * 301.34033 * 18 16 13 45 45 H 1.08998 * 109.49983 * 178.68458 * 19 18 16 46 46 H 1.09002 * 109.52122 * 58.60233 * 19 18 16 47 47 H 1.09005 * 109.58538 * 174.42044 * 20 19 18 48 48 H 1.09006 * 109.58252 * 294.69757 * 20 19 18 49 49 H 0.97000 * 119.99586 * 180.02562 * 25 24 22 50 50 H 1.09007 * 109.46655 * 293.57470 * 30 21 20 51 51 H 1.08995 * 109.60064 * 173.21451 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3141 1.4415 1.0545 6 7 5.6514 1.4412 0.6426 7 1 6.4247 1.4402 1.2281 8 6 5.6835 1.4366 -0.6996 9 6 4.3767 1.4429 -1.1443 10 6 3.9304 1.4436 -2.5494 11 8 2.7427 1.4437 -2.8100 12 7 4.8388 1.4440 -3.5449 13 6 4.3953 1.4441 -4.9413 14 1 3.4830 0.8544 -5.0328 15 6 4.1206 2.8812 -5.3890 16 6 5.4869 0.8349 -5.8233 17 1 5.6843 -0.1885 -5.5040 18 6 5.0241 0.8342 -7.2819 19 6 6.1017 0.1951 -8.1607 20 6 7.3896 1.0188 -8.0625 21 7 7.7641 1.1496 -6.6478 22 6 9.0159 0.7941 -6.2217 23 1 9.5697 0.0317 -6.7493 24 6 9.5731 1.4134 -5.1114 25 7 9.0705 2.5464 -4.6684 26 14 11.0362 0.6392 -4.2459 27 1 11.4078 -0.6229 -4.9348 28 1 12.1855 1.5790 -4.2797 29 1 10.6782 0.3455 -2.8350 30 6 6.7679 1.6658 -5.6986 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5137 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8898 36 1 1.6768 1.9562 0.8901 37 1 1.6766 1.9564 -0.8899 38 1 6.5691 1.4315 -1.3178 39 1 5.7862 1.4434 -3.3371 40 1 3.3429 3.3152 -4.7607 41 1 5.0328 3.4708 -5.2975 42 1 3.7903 2.8812 -6.4278 43 1 4.8503 1.8595 -7.6083 44 1 4.0992 0.2640 -7.3691 45 1 5.7615 0.1737 -9.1960 46 1 6.2937 -0.8223 -7.8197 47 1 8.1882 0.5146 -8.6067 48 1 7.2242 2.0079 -8.4898 49 1 9.4601 2.9794 -3.8928 50 1 6.5511 2.7085 -5.9308 51 1 7.1562 1.5885 -4.6831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025462236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:26 Heat of formation + Delta-G solvation = 13.019400 kcal Electronic energy + Delta-G solvation = -30168.451045 eV Core-core repulsion = 26296.113631 eV Total energy + Delta-G solvation = -3872.337414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.46677 -40.63728 -39.21246 -36.59331 -36.02379 -34.76660 -33.06701 -32.56732 -31.75117 -30.93227 -29.46001 -28.02829 -27.15356 -25.49028 -24.16337 -23.70754 -22.89546 -22.03497 -21.05715 -20.65310 -20.13530 -19.26833 -18.59624 -17.43156 -17.00222 -16.48447 -16.28335 -16.02385 -15.80586 -15.56397 -15.37310 -15.24697 -15.12630 -14.87638 -14.60318 -14.22678 -14.07401 -13.92494 -13.91099 -13.57210 -13.21229 -12.93119 -12.88505 -12.72860 -12.63538 -12.45885 -12.32310 -12.15361 -12.04959 -12.01121 -11.80279 -11.65813 -11.55042 -11.44372 -11.12735 -10.99986 -10.72350 -10.53885 -10.47078 -10.07303 -9.72629 -8.57334 -7.81080 -5.25666 0.50064 1.08238 1.46580 1.52229 1.60650 1.75303 2.38094 2.48597 2.55023 3.30633 3.43104 3.66938 3.71115 3.99771 4.09142 4.11168 4.17201 4.21071 4.22938 4.36368 4.36737 4.39171 4.51739 4.56726 4.60983 4.71218 4.81249 4.85059 4.89701 4.90804 4.95556 5.02827 5.08697 5.10675 5.14577 5.21487 5.26506 5.33495 5.35526 5.43596 5.45998 5.48170 5.52127 5.61309 5.68368 5.74087 5.86792 6.19481 6.45805 6.46871 6.71488 7.22361 7.36908 7.92599 8.45227 9.24286 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.003800 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.093953 B = 7367.355217 C = 9258.529006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C -0.041 4.041 4 C 0.127 3.873 5 N -0.317 5.317 6 N -0.447 5.447 7 H 0.459 0.541 8 C 0.125 3.875 9 C -0.313 4.313 10 C 0.592 3.408 11 O -0.572 6.572 12 N -0.715 5.715 13 C 0.162 3.838 14 H 0.080 0.920 15 C -0.155 4.155 16 C -0.109 4.109 17 H 0.057 0.943 18 C -0.100 4.100 19 C -0.123 4.123 20 C 0.137 3.863 21 N -0.612 5.612 22 C -0.262 4.262 23 H 0.057 0.943 24 C -0.039 4.039 25 N -0.925 5.925 26 Si 0.957 3.043 27 H -0.277 1.277 28 H -0.298 1.298 29 H -0.280 1.280 30 C 0.189 3.811 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.207 0.793 39 H 0.402 0.598 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.051 0.949 47 H 0.047 0.953 48 H 0.013 0.987 49 H 0.251 0.749 50 H 0.006 0.994 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.134 -3.104 6.766 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.080 4.080 4 C -0.041 4.041 5 N -0.139 5.139 6 N -0.153 5.153 7 H 0.307 0.693 8 C -0.029 4.029 9 C -0.328 4.328 10 C 0.381 3.619 11 O -0.453 6.453 12 N -0.366 5.366 13 C 0.057 3.943 14 H 0.098 0.902 15 C -0.213 4.213 16 C -0.129 4.129 17 H 0.075 0.925 18 C -0.138 4.138 19 C -0.162 4.162 20 C 0.012 3.988 21 N -0.335 5.335 22 C -0.392 4.392 23 H 0.075 0.925 24 C -0.235 4.235 25 N -0.571 5.571 26 Si 0.786 3.214 27 H -0.202 1.202 28 H -0.225 1.225 29 H -0.206 1.206 30 C 0.064 3.936 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.223 0.777 39 H 0.238 0.762 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.031 0.969 49 H 0.060 0.940 50 H 0.024 0.976 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.846 -3.011 7.970 14.591 hybrid contribution 2.260 -0.051 -0.124 2.264 sum -9.586 -3.061 7.846 12.760 Atomic orbital electron populations 1.21705 0.93895 1.02304 1.02273 1.21300 0.97160 0.94701 1.01164 1.20204 0.84821 0.99113 1.03903 1.22671 0.97712 0.94993 0.88723 1.77064 0.87175 1.27094 1.22589 1.46119 1.07699 1.55946 1.05528 0.69289 1.23550 0.99217 0.94135 0.86034 1.20366 0.93178 1.25070 0.94219 1.17413 0.85361 0.75048 0.84088 1.90671 1.17083 1.52806 1.84770 1.46054 1.09887 1.74663 1.06009 1.20830 0.97008 0.96939 0.79542 0.90177 1.22170 1.01138 0.96137 1.01894 1.21913 0.95707 0.99495 0.95814 0.92467 1.21447 0.98007 1.01210 0.93165 1.21882 0.95565 0.98905 0.99868 1.21079 0.95704 0.96524 0.85538 1.44318 1.10113 1.76101 1.02970 1.19461 0.93747 1.14394 1.11632 0.92506 1.25595 1.00305 0.95852 1.01771 1.70182 1.44126 1.16224 1.26526 0.85385 0.79544 0.77760 0.78756 1.20240 1.22533 1.20641 1.20661 0.85888 0.92604 0.94451 0.92847 0.91877 0.91523 0.93538 0.92135 0.89474 0.89465 0.77663 0.76156 0.93273 0.93084 0.90280 0.91740 0.90840 0.90050 0.93017 0.93453 0.96910 0.93956 0.97644 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.91 71.98 0.71 -1.94 16 2 C -0.10 -2.40 5.92 30.59 0.18 -2.22 16 3 C -0.04 -1.03 5.25 29.85 0.16 -0.87 16 4 C 0.13 3.56 6.52 43.52 0.28 3.85 16 5 N -0.32 -8.36 12.63 -46.67 -0.59 -8.94 16 6 N -0.45 -9.38 7.29 -56.32 -0.41 -9.79 16 7 H 0.46 6.22 8.96 -213.43 -1.91 4.30 16 8 C 0.13 2.92 11.52 84.28 0.97 3.89 16 9 C -0.31 -9.06 6.13 -20.15 -0.12 -9.19 16 10 C 0.59 19.25 7.78 86.67 0.67 19.93 16 11 O -0.57 -20.81 14.58 -4.02 -0.06 -20.87 16 12 N -0.72 -22.57 4.99 -445.80 -2.22 -24.80 16 13 C 0.16 5.09 2.41 44.99 0.11 5.20 16 14 H 0.08 2.55 7.58 -2.38 -0.02 2.53 16 15 C -0.16 -4.75 8.79 71.98 0.63 -4.12 16 16 C -0.11 -3.70 2.33 -10.72 -0.02 -3.72 16 17 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 18 C -0.10 -2.97 4.78 30.62 0.15 -2.83 16 19 C -0.12 -3.83 6.08 30.67 0.19 -3.65 16 20 C 0.14 5.41 6.51 86.36 0.56 5.97 16 21 N -0.61 -28.74 3.00 -699.01 -2.10 -30.83 16 22 C -0.26 -13.60 9.58 84.03 0.81 -12.79 16 23 H 0.06 2.96 7.88 -2.91 -0.02 2.94 16 24 C -0.04 -2.01 4.92 84.86 0.42 -1.59 16 25 N -0.92 -48.95 11.20 21.65 0.24 -48.71 16 26 Si 0.96 41.36 29.59 68.60 2.03 43.39 16 27 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 28 H -0.30 -13.18 7.11 99.48 0.71 -12.48 16 29 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 30 C 0.19 8.07 4.08 86.36 0.35 8.42 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.09 2.45 6.55 -2.39 -0.02 2.43 16 38 H 0.21 4.01 7.46 -2.91 -0.02 3.98 16 39 H 0.40 12.71 5.90 -92.71 -0.55 12.17 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.73 6.32 -2.39 -0.02 1.72 16 42 H 0.08 2.14 6.46 -2.39 -0.02 2.12 16 43 H 0.06 1.88 6.50 -2.39 -0.02 1.87 16 44 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.05 1.86 7.93 -2.38 -0.02 1.84 16 48 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 49 H 0.25 12.77 8.31 -92.71 -0.77 12.00 16 50 H 0.01 0.26 6.18 -2.38 -0.01 0.24 16 51 H 0.06 2.91 4.66 -2.39 -0.01 2.90 16 Total: -1.00 -64.03 395.49 1.42 -62.61 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -1.51 Total: 33.59 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 6.04 Total: 4.35 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -5.08 Total: -123.07 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.06 Total: -20.87 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -64.03 1.42 -62.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025462236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.628 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds