Wall clock time and date at job start Tue Mar 31 2020 19:58:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.53005 * 109.47115 * 2 1
4 4 C 1.50700 * 109.46790 * 179.97438 * 3 2 1
5 5 C 1.35368 * 126.38399 * 275.29317 * 4 3 2
6 6 C 1.41505 * 105.49963 * 180.14679 * 5 4 3
7 7 C 1.47712 * 126.51537 * 179.85186 * 6 5 4
8 8 O 1.21572 * 119.99966 * 359.70247 * 7 6 5
9 9 N 1.34776 * 119.99830 * 179.71166 * 7 6 5
10 10 C 1.46501 * 120.00063 * 179.97438 * 9 7 6
11 11 H 1.08999 * 109.47462 * 325.00429 * 10 9 7
12 12 C 1.53004 * 109.46718 * 84.99820 * 10 9 7
13 13 C 1.52999 * 109.47492 * 204.99827 * 10 9 7
14 14 H 1.08999 * 109.49716 * 299.93963 * 13 10 9
15 15 C 1.53042 * 109.52252 * 179.85520 * 13 10 9
16 16 C 1.53040 * 109.53399 * 178.67024 * 15 13 10
17 17 C 1.52757 * 109.38837 * 61.23930 * 16 15 13
18 18 N 1.46933 * 109.00863 * 305.59166 * 17 16 15
19 19 C 1.36935 * 120.62781 * 233.58305 * 18 17 16
20 20 H 1.07995 * 119.99873 * 152.09995 * 19 18 17
21 21 C 1.38811 * 119.99806 * 332.09376 * 19 18 17
22 22 N 1.31615 * 120.00651 * 335.28172 * 21 19 18
23 23 Si 1.86803 * 119.99607 * 155.00135 * 21 19 18
24 24 H 1.48496 * 109.47436 * 60.00138 * 23 21 19
25 25 H 1.48503 * 109.47168 * 180.02562 * 23 21 19
26 26 H 1.48498 * 109.47355 * 300.00110 * 23 21 19
27 27 C 1.46923 * 118.73785 * 53.30252 * 18 17 16
28 28 N 1.31813 * 106.96480 * 359.58076 * 6 5 4
29 29 N 1.28466 * 110.07184 * 0.26442 * 28 6 5
30 30 H 0.96995 * 124.88000 * 179.97438 * 29 28 6
31 31 H 1.09001 * 109.47347 * 300.00669 * 1 2 3
32 32 H 1.09007 * 109.47194 * 59.99984 * 1 2 3
33 33 H 1.08994 * 109.47174 * 179.97438 * 1 2 3
34 34 H 1.08998 * 109.47435 * 240.00101 * 2 1 3
35 35 H 1.09006 * 109.47168 * 119.99461 * 2 1 3
36 36 H 1.08990 * 109.47474 * 60.00009 * 3 2 1
37 37 H 1.09001 * 109.46931 * 299.99367 * 3 2 1
38 38 H 1.07999 * 127.25089 * 359.97438 * 5 4 3
39 39 H 0.96998 * 120.00042 * 359.97438 * 9 7 6
40 40 H 1.09001 * 109.46965 * 179.97438 * 12 10 9
41 41 H 1.08994 * 109.47208 * 300.00119 * 12 10 9
42 42 H 1.08999 * 109.46804 * 60.00651 * 12 10 9
43 43 H 1.08990 * 109.46013 * 298.68790 * 15 13 10
44 44 H 1.09000 * 109.45871 * 58.64982 * 15 13 10
45 45 H 1.09003 * 109.50007 * 181.32125 * 16 15 13
46 46 H 1.09008 * 109.49676 * 301.38120 * 16 15 13
47 47 H 1.08994 * 109.51278 * 185.70471 * 17 16 15
48 48 H 1.09000 * 109.43033 * 65.42089 * 17 16 15
49 49 H 0.97009 * 119.99439 * 353.96783 * 22 21 19
50 50 H 1.09006 * 109.58528 * 66.43409 * 27 18 17
51 51 H 1.09001 * 109.58720 * 186.85700 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5469 1.4425 0.0006
5 6 4.3495 1.3420 1.0861
6 6 5.6718 1.3919 0.5847
7 6 6.9158 1.3229 1.3781
8 8 6.8601 1.2175 2.5880
9 7 8.1126 1.3772 0.7607
10 6 9.3465 1.3093 1.5476
11 1 9.1985 1.8181 2.5002
12 6 9.7088 -0.1552 1.8026
13 6 10.4807 1.9887 0.7775
14 1 10.6298 1.4795 -0.1747
15 6 11.7694 1.9216 1.6001
16 6 12.9115 2.5717 0.8158
17 6 12.5781 4.0399 0.5577
18 7 11.2680 4.1243 -0.1020
19 6 11.1224 4.8088 -1.2790
20 1 10.3496 4.5238 -1.9774
21 6 11.9682 5.8692 -1.5744
22 7 12.5576 6.5316 -0.6018
23 14 12.2758 6.3510 -3.3528
24 1 10.9902 6.7286 -3.9929
25 1 13.2097 7.5048 -3.3986
26 1 12.8727 5.2025 -4.0807
27 6 10.1184 3.4550 0.5219
28 7 5.5822 1.5057 -0.7254
29 7 4.3485 1.5366 -1.0820
30 1 4.0374 1.6164 -1.9973
31 1 -0.3634 0.5139 0.8899
32 1 -0.3634 0.5139 -0.8900
33 1 -0.3633 -1.0276 -0.0005
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5138 0.8901
36 1 1.6767 1.9564 0.8899
37 1 1.6767 1.9563 -0.8901
38 1 4.0447 1.2470 2.1179
39 1 8.1570 1.4611 -0.2046
40 1 10.6271 -0.2057 2.3877
41 1 8.9009 -0.6391 2.3513
42 1 9.8570 -0.6639 0.8500
43 1 11.6273 2.4522 2.5415
44 1 12.0160 0.8797 1.8044
45 1 13.8341 2.5027 1.3922
46 1 13.0383 2.0566 -0.1365
47 1 13.3404 4.4786 -0.0861
48 1 12.5449 4.5763 1.5060
49 1 12.3346 6.3371 0.3221
50 1 9.8805 3.9428 1.4672
51 1 9.2583 3.5080 -0.1456
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001025501181.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:58:47
Heat of formation + Delta-G solvation = 28.124062 kcal
Electronic energy + Delta-G solvation = -29090.821058 eV
Core-core repulsion = 25219.138631 eV
Total energy + Delta-G solvation = -3871.682427 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.27 seconds
Orbital eigenvalues (eV)
-42.85736 -39.61483 -37.92288 -35.76151 -35.33436 -33.18076 -32.14573 -31.32126
-30.61423 -30.42648 -28.39041 -26.85299 -25.26063 -24.50426 -22.85590 -22.34858
-22.02808 -21.22123 -20.38100 -20.06545 -18.97809 -17.92293 -17.36748 -16.82856
-15.99618 -15.77710 -15.52362 -14.70461 -14.54883 -14.25394 -14.12494 -13.90087
-13.84001 -13.63450 -13.56946 -13.43760 -13.31265 -12.80204 -12.65536 -12.53082
-12.28095 -11.94750 -11.83741 -11.75916 -11.53617 -11.26182 -11.07802 -10.93926
-10.86569 -10.64138 -10.28325 -10.18682 -10.08767 -10.01811 -9.83998 -9.67877
-9.54785 -9.22522 -9.15896 -8.84607 -8.32468 -6.83141 -6.02269 -3.18509
1.50292 1.92674 2.63888 3.29795 3.48904 3.50673 3.54080 3.72186
4.20593 4.32928 4.48182 4.57185 4.60868 4.85492 4.95268 4.97147
5.22997 5.23606 5.26778 5.32231 5.37317 5.39225 5.42908 5.53081
5.56006 5.57483 5.58710 5.74875 5.77760 5.78517 5.82333 6.00367
6.04802 6.11533 6.20680 6.26579 6.27723 6.40455 6.53363 6.54932
6.63771 6.75317 6.77624 6.81626 6.90853 7.16272 7.26490 7.54466
7.81714 8.03813 8.33871 8.62041 9.16857 9.89441 10.34827 11.25768
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.012820 B = 0.002670 C = 0.002296
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2183.613197 B =10483.582614 C =12190.683746
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.121 4.121
3 C -0.050 4.050
4 C 0.013 3.987
5 C -0.175 4.175
6 C -0.008 4.008
7 C 0.603 3.397
8 O -0.538 6.538
9 N -0.705 5.705
10 C 0.148 3.852
11 H 0.087 0.913
12 C -0.161 4.161
13 C -0.111 4.111
14 H 0.072 0.928
15 C -0.101 4.101
16 C -0.136 4.136
17 C 0.149 3.851
18 N -0.598 5.598
19 C -0.347 4.347
20 H 0.054 0.946
21 C -0.026 4.026
22 N -0.916 5.916
23 Si 1.064 2.936
24 H -0.294 1.294
25 H -0.286 1.286
26 H -0.294 1.294
27 C 0.157 3.843
28 N -0.254 5.254
29 N -0.379 5.379
30 H 0.444 0.556
31 H 0.057 0.943
32 H 0.054 0.946
33 H 0.057 0.943
34 H 0.061 0.939
35 H 0.070 0.930
36 H 0.092 0.908
37 H 0.076 0.924
38 H 0.161 0.839
39 H 0.407 0.593
40 H 0.069 0.931
41 H 0.056 0.944
42 H 0.055 0.945
43 H 0.056 0.944
44 H 0.054 0.946
45 H 0.051 0.949
46 H 0.057 0.943
47 H 0.078 0.922
48 H 0.015 0.985
49 H 0.269 0.731
50 H 0.015 0.985
51 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.287 -14.768 1.126 24.318
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.159 4.159
3 C -0.089 4.089
4 C -0.112 4.112
5 C -0.203 4.203
6 C -0.169 4.169
7 C 0.387 3.613
8 O -0.413 6.413
9 N -0.355 5.355
10 C 0.043 3.957
11 H 0.105 0.895
12 C -0.219 4.219
13 C -0.131 4.131
14 H 0.091 0.909
15 C -0.139 4.139
16 C -0.176 4.176
17 C 0.023 3.977
18 N -0.322 5.322
19 C -0.476 4.476
20 H 0.072 0.928
21 C -0.227 4.227
22 N -0.557 5.557
23 Si 0.893 3.107
24 H -0.221 1.221
25 H -0.211 1.211
26 H -0.221 1.221
27 C 0.031 3.969
28 N -0.090 5.090
29 N -0.094 5.094
30 H 0.288 0.712
31 H 0.076 0.924
32 H 0.073 0.927
33 H 0.076 0.924
34 H 0.080 0.920
35 H 0.089 0.911
36 H 0.110 0.890
37 H 0.094 0.906
38 H 0.179 0.821
39 H 0.242 0.758
40 H 0.088 0.912
41 H 0.075 0.925
42 H 0.074 0.926
43 H 0.075 0.925
44 H 0.072 0.928
45 H 0.070 0.930
46 H 0.076 0.924
47 H 0.096 0.904
48 H 0.033 0.967
49 H 0.080 0.920
50 H 0.033 0.967
51 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -17.746 -13.704 0.076 22.421
hybrid contribution -1.582 -0.998 0.636 1.976
sum -19.328 -14.702 0.712 24.295
Atomic orbital electron populations
1.21781 0.95210 1.02032 1.02049 1.21546 0.96011 0.95492 1.02866
1.20224 0.86294 0.98275 1.04135 1.21418 0.95003 1.07417 0.87384
1.21493 0.90435 1.08646 0.99758 1.22001 0.95330 1.09679 0.89889
1.16869 0.81732 0.76349 0.86304 1.90773 1.86854 1.50558 1.13146
1.45959 1.05049 1.73048 1.11480 1.21078 0.82911 0.96094 0.95599
0.89479 1.22205 1.01790 0.96156 1.01798 1.21953 0.93552 0.99030
0.98606 0.90925 1.21442 0.94603 0.99596 0.98274 1.21986 0.96476
0.99750 0.99338 1.20873 0.89048 0.91910 0.95901 1.44094 1.02196
1.60460 1.25415 1.19949 1.21142 1.11746 0.94739 0.92780 1.25816
0.98783 0.92454 1.05696 1.70770 1.45911 1.38045 1.00928 0.83548
0.76126 0.75962 0.75018 1.22095 1.21124 1.22113 1.20861 0.90923
0.89227 0.95909 1.73607 1.01483 1.18735 1.15137 1.43317 1.02951
1.53230 1.09871 0.71196 0.92356 0.92651 0.92436 0.91992 0.91137
0.88966 0.90564 0.82125 0.75764 0.91244 0.92508 0.92635 0.92539
0.92784 0.92993 0.92446 0.90377 0.96709 0.92020 0.96711 0.92824
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.64 9.91 37.15 0.37 -0.27 16
2 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16
3 C -0.05 -0.28 5.77 -27.88 -0.16 -0.44 16
4 C 0.01 0.12 6.48 -82.21 -0.53 -0.41 16
5 C -0.18 -2.08 10.73 -39.36 -0.42 -2.50 16
6 C -0.01 -0.11 7.13 -82.76 -0.59 -0.70 16
7 C 0.60 9.75 7.79 -12.39 -0.10 9.65 16
8 O -0.54 -9.96 16.59 5.30 0.09 -9.87 16
9 N -0.70 -10.74 4.47 -54.79 -0.24 -10.99 16
10 C 0.15 2.27 2.16 -67.93 -0.15 2.12 16
11 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16
12 C -0.16 -2.14 9.14 37.16 0.34 -1.80 16
13 C -0.11 -1.90 1.97 -90.50 -0.18 -2.08 16
14 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
15 C -0.10 -1.68 4.86 -26.69 -0.13 -1.81 16
16 C -0.14 -2.58 6.06 -26.84 -0.16 -2.74 16
17 C 0.15 3.52 4.66 -3.93 -0.02 3.50 16
18 N -0.60 -15.14 2.86 -172.58 -0.49 -15.64 16
19 C -0.35 -9.77 9.49 -15.06 -0.14 -9.91 16
20 H 0.05 1.53 7.94 -52.49 -0.42 1.11 16
21 C -0.03 -0.73 4.69 -17.43 -0.08 -0.82 16
22 N -0.92 -27.79 12.40 55.49 0.69 -27.10 16
23 Si 1.06 25.50 29.99 -169.99 -5.10 20.40 16
24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16
25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16
26 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16
27 C 0.16 3.38 5.56 -3.71 -0.02 3.36 16
28 N -0.25 -3.27 11.92 33.42 0.40 -2.88 16
29 N -0.38 -3.53 6.83 33.50 0.23 -3.30 16
30 H 0.44 2.55 8.96 -190.45 -1.71 0.84 16
31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16
32 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16
33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16
34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16
35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16
37 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16
38 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16
39 H 0.41 5.99 8.14 -40.82 -0.33 5.66 16
40 H 0.07 0.84 6.41 -51.93 -0.33 0.51 16
41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16
42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
43 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16
44 H 0.05 0.77 6.37 -51.93 -0.33 0.43 16
45 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16
46 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16
47 H 0.08 2.07 6.30 -51.93 -0.33 1.75 16
48 H 0.01 0.36 7.87 -51.93 -0.41 -0.05 16
49 H 0.27 8.26 6.71 -40.82 -0.27 7.98 16
50 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16
51 H 0.05 1.17 7.44 -51.93 -0.39 0.78 16
LS Contribution 404.45 15.07 6.10 6.10
Total: -1.00 -33.93 404.45 -10.52 -44.45
By element:
Atomic # 1 Polarization: 14.49 SS G_CDS: -10.05 Total: 4.45 kcal
Atomic # 6 Polarization: -3.48 SS G_CDS: -2.13 Total: -5.61 kcal
Atomic # 7 Polarization: -60.48 SS G_CDS: 0.58 Total: -59.91 kcal
Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal
Atomic # 14 Polarization: 25.50 SS G_CDS: -5.10 Total: 20.40 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -33.93 -10.52 -44.45 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025501181.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.570 kcal
(2) G-P(sol) polarization free energy of solvation -33.929 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.641 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.446 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.124 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.27 seconds