Wall clock time and date at job start Tue Mar 31 2020 19:58:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.53005 * 109.47115 * 2 1
4 4 C 1.50700 * 109.46790 * 179.97438 * 3 2 1
5 5 C 1.35368 * 126.38399 * 275.29317 * 4 3 2
6 6 C 1.41505 * 105.49963 * 180.14679 * 5 4 3
7 7 C 1.47712 * 126.51537 * 179.85186 * 6 5 4
8 8 O 1.21572 * 119.99966 * 359.70247 * 7 6 5
9 9 N 1.34776 * 119.99830 * 179.71166 * 7 6 5
10 10 C 1.46501 * 120.00063 * 179.97438 * 9 7 6
11 11 H 1.08999 * 109.47462 * 325.00429 * 10 9 7
12 12 C 1.53004 * 109.46718 * 84.99820 * 10 9 7
13 13 C 1.52999 * 109.47492 * 204.99827 * 10 9 7
14 14 H 1.08999 * 109.49716 * 299.93963 * 13 10 9
15 15 C 1.53042 * 109.52252 * 179.85520 * 13 10 9
16 16 C 1.53040 * 109.53399 * 178.67024 * 15 13 10
17 17 C 1.52757 * 109.38837 * 61.23930 * 16 15 13
18 18 N 1.46933 * 109.00863 * 305.59166 * 17 16 15
19 19 C 1.36935 * 120.62781 * 233.58305 * 18 17 16
20 20 H 1.07995 * 119.99873 * 152.09995 * 19 18 17
21 21 C 1.38811 * 119.99806 * 332.09376 * 19 18 17
22 22 N 1.31615 * 120.00651 * 335.28172 * 21 19 18
23 23 Si 1.86803 * 119.99607 * 155.00135 * 21 19 18
24 24 H 1.48496 * 109.47436 * 60.00138 * 23 21 19
25 25 H 1.48503 * 109.47168 * 180.02562 * 23 21 19
26 26 H 1.48498 * 109.47355 * 300.00110 * 23 21 19
27 27 C 1.46923 * 118.73785 * 53.30252 * 18 17 16
28 28 N 1.31813 * 106.96480 * 359.58076 * 6 5 4
29 29 N 1.28466 * 110.07184 * 0.26442 * 28 6 5
30 30 H 0.96995 * 124.88000 * 179.97438 * 29 28 6
31 31 H 1.09001 * 109.47347 * 300.00669 * 1 2 3
32 32 H 1.09007 * 109.47194 * 59.99984 * 1 2 3
33 33 H 1.08994 * 109.47174 * 179.97438 * 1 2 3
34 34 H 1.08998 * 109.47435 * 240.00101 * 2 1 3
35 35 H 1.09006 * 109.47168 * 119.99461 * 2 1 3
36 36 H 1.08990 * 109.47474 * 60.00009 * 3 2 1
37 37 H 1.09001 * 109.46931 * 299.99367 * 3 2 1
38 38 H 1.07999 * 127.25089 * 359.97438 * 5 4 3
39 39 H 0.96998 * 120.00042 * 359.97438 * 9 7 6
40 40 H 1.09001 * 109.46965 * 179.97438 * 12 10 9
41 41 H 1.08994 * 109.47208 * 300.00119 * 12 10 9
42 42 H 1.08999 * 109.46804 * 60.00651 * 12 10 9
43 43 H 1.08990 * 109.46013 * 298.68790 * 15 13 10
44 44 H 1.09000 * 109.45871 * 58.64982 * 15 13 10
45 45 H 1.09003 * 109.50007 * 181.32125 * 16 15 13
46 46 H 1.09008 * 109.49676 * 301.38120 * 16 15 13
47 47 H 1.08994 * 109.51278 * 185.70471 * 17 16 15
48 48 H 1.09000 * 109.43033 * 65.42089 * 17 16 15
49 49 H 0.97009 * 119.99439 * 353.96783 * 22 21 19
50 50 H 1.09006 * 109.58528 * 66.43409 * 27 18 17
51 51 H 1.09001 * 109.58720 * 186.85700 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5469 1.4425 0.0006
5 6 4.3495 1.3420 1.0861
6 6 5.6718 1.3919 0.5847
7 6 6.9158 1.3229 1.3781
8 8 6.8601 1.2175 2.5880
9 7 8.1126 1.3772 0.7607
10 6 9.3465 1.3093 1.5476
11 1 9.1985 1.8181 2.5002
12 6 9.7088 -0.1552 1.8026
13 6 10.4807 1.9887 0.7775
14 1 10.6298 1.4795 -0.1747
15 6 11.7694 1.9216 1.6001
16 6 12.9115 2.5717 0.8158
17 6 12.5781 4.0399 0.5577
18 7 11.2680 4.1243 -0.1020
19 6 11.1224 4.8088 -1.2790
20 1 10.3496 4.5238 -1.9774
21 6 11.9682 5.8692 -1.5744
22 7 12.5576 6.5316 -0.6018
23 14 12.2758 6.3510 -3.3528
24 1 10.9902 6.7286 -3.9929
25 1 13.2097 7.5048 -3.3986
26 1 12.8727 5.2025 -4.0807
27 6 10.1184 3.4550 0.5219
28 7 5.5822 1.5057 -0.7254
29 7 4.3485 1.5366 -1.0820
30 1 4.0374 1.6164 -1.9973
31 1 -0.3634 0.5139 0.8899
32 1 -0.3634 0.5139 -0.8900
33 1 -0.3633 -1.0276 -0.0005
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5138 0.8901
36 1 1.6767 1.9564 0.8899
37 1 1.6767 1.9563 -0.8901
38 1 4.0447 1.2470 2.1179
39 1 8.1570 1.4611 -0.2046
40 1 10.6271 -0.2057 2.3877
41 1 8.9009 -0.6391 2.3513
42 1 9.8570 -0.6639 0.8500
43 1 11.6273 2.4522 2.5415
44 1 12.0160 0.8797 1.8044
45 1 13.8341 2.5027 1.3922
46 1 13.0383 2.0566 -0.1365
47 1 13.3404 4.4786 -0.0861
48 1 12.5449 4.5763 1.5060
49 1 12.3346 6.3371 0.3221
50 1 9.8805 3.9428 1.4672
51 1 9.2583 3.5080 -0.1456
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001025501181.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:58:45
Heat of formation + Delta-G solvation = 6.494218 kcal
Electronic energy + Delta-G solvation = -29091.758998 eV
Core-core repulsion = 25219.138631 eV
Total energy + Delta-G solvation = -3872.620367 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-43.74132 -40.93453 -39.49877 -36.91624 -36.25512 -34.86505 -33.25146 -32.38100
-32.19417 -31.70360 -29.86762 -27.42533 -27.09232 -25.83867 -24.29108 -23.77402
-22.88718 -21.95498 -21.84991 -21.37019 -20.48236 -19.38704 -18.72026 -17.99037
-17.18137 -16.81481 -16.32640 -16.13965 -15.94395 -15.65268 -15.45781 -15.35197
-15.22238 -14.91004 -14.79276 -14.58625 -14.25391 -14.03602 -13.94306 -13.80224
-13.48287 -13.06730 -12.93799 -12.67553 -12.60958 -12.47399 -12.34390 -12.13715
-11.94818 -11.93170 -11.88745 -11.74183 -11.64074 -11.54582 -11.47648 -11.18829
-11.05949 -10.53488 -10.46788 -10.08389 -9.98214 -8.94196 -8.25206 -5.41046
0.46796 1.07176 1.56346 1.64339 1.83123 1.83222 2.20558 2.32461
2.64440 3.19452 3.33519 3.43914 3.62554 3.79150 3.91112 3.94166
3.97717 4.15794 4.20475 4.23911 4.36575 4.39790 4.44620 4.51205
4.53924 4.63792 4.67788 4.74195 4.77886 4.83983 4.84887 4.92944
4.94762 4.98192 5.01226 5.11808 5.17313 5.21353 5.22017 5.26196
5.29999 5.33945 5.38949 5.47093 5.47598 5.56406 5.81462 6.06429
6.37394 6.41418 6.82546 7.04849 7.11305 7.77361 8.21937 8.98581
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.012820 B = 0.002670 C = 0.002296
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2183.613197 B =10483.582614 C =12190.683746
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.118 4.118
3 C -0.047 4.047
4 C 0.038 3.962
5 C -0.198 4.198
6 C -0.037 4.037
7 C 0.600 3.400
8 O -0.569 6.569
9 N -0.703 5.703
10 C 0.154 3.846
11 H 0.070 0.930
12 C -0.152 4.152
13 C -0.093 4.093
14 H 0.075 0.925
15 C -0.097 4.097
16 C -0.126 4.126
17 C 0.152 3.848
18 N -0.616 5.616
19 C -0.353 4.353
20 H 0.049 0.951
21 C -0.078 4.078
22 N -0.942 5.942
23 Si 1.115 2.885
24 H -0.277 1.277
25 H -0.292 1.292
26 H -0.277 1.277
27 C 0.158 3.842
28 N -0.271 5.271
29 N -0.364 5.364
30 H 0.460 0.540
31 H 0.060 0.940
32 H 0.063 0.937
33 H 0.057 0.943
34 H 0.061 0.939
35 H 0.059 0.941
36 H 0.101 0.899
37 H 0.100 0.900
38 H 0.163 0.837
39 H 0.409 0.591
40 H 0.086 0.914
41 H 0.051 0.949
42 H 0.066 0.934
43 H 0.054 0.946
44 H 0.093 0.907
45 H 0.077 0.923
46 H 0.056 0.944
47 H 0.043 0.957
48 H -0.002 1.002
49 H 0.252 0.748
50 H -0.002 1.002
51 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.610 -16.587 -0.082 26.456
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.156 4.156
3 C -0.086 4.086
4 C -0.089 4.089
5 C -0.226 4.226
6 C -0.196 4.196
7 C 0.386 3.614
8 O -0.447 6.447
9 N -0.353 5.353
10 C 0.049 3.951
11 H 0.088 0.912
12 C -0.210 4.210
13 C -0.114 4.114
14 H 0.093 0.907
15 C -0.135 4.135
16 C -0.164 4.164
17 C 0.026 3.974
18 N -0.340 5.340
19 C -0.483 4.483
20 H 0.067 0.933
21 C -0.274 4.274
22 N -0.584 5.584
23 Si 0.940 3.060
24 H -0.203 1.203
25 H -0.218 1.218
26 H -0.204 1.204
27 C 0.032 3.968
28 N -0.108 5.108
29 N -0.080 5.080
30 H 0.308 0.692
31 H 0.079 0.921
32 H 0.082 0.918
33 H 0.076 0.924
34 H 0.080 0.920
35 H 0.078 0.922
36 H 0.119 0.881
37 H 0.118 0.882
38 H 0.180 0.820
39 H 0.245 0.755
40 H 0.105 0.895
41 H 0.070 0.930
42 H 0.085 0.915
43 H 0.073 0.927
44 H 0.112 0.888
45 H 0.095 0.905
46 H 0.074 0.926
47 H 0.062 0.938
48 H 0.016 0.984
49 H 0.062 0.938
50 H 0.016 0.984
51 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -19.085 -15.559 -1.145 24.650
hybrid contribution -1.290 -0.401 1.014 1.689
sum -20.376 -15.959 -0.131 25.882
Atomic orbital electron populations
1.21763 0.94212 1.02272 1.02620 1.21508 0.96791 0.94958 1.02387
1.20389 0.83466 0.98962 1.05779 1.21838 0.96384 1.04499 0.86171
1.21679 0.90044 1.10056 1.00870 1.21858 0.95290 1.11929 0.90565
1.17169 0.82463 0.75616 0.86151 1.90738 1.87386 1.52166 1.14429
1.45957 1.05004 1.72765 1.11537 1.20980 0.82288 0.97467 0.94359
0.91190 1.22132 1.02328 0.93930 1.02635 1.21728 0.94779 0.95627
0.99251 0.90702 1.21453 0.92969 1.01650 0.97413 1.21853 0.98556
0.95869 1.00165 1.20785 0.87525 0.95042 0.94020 1.44345 1.03796
1.60677 1.25207 1.20204 1.20804 1.11636 0.95613 0.93280 1.27237
0.98828 0.92626 1.08750 1.70900 1.47472 1.39603 1.00443 0.82858
0.76582 0.75877 0.70728 1.20275 1.21801 1.20354 1.20924 0.89651
0.91742 0.94441 1.73526 1.03246 1.19478 1.14583 1.43419 1.02087
1.51567 1.10973 0.69196 0.92097 0.91777 0.92421 0.91976 0.92223
0.88079 0.88176 0.81951 0.75478 0.89499 0.93029 0.91460 0.92699
0.88850 0.90450 0.92565 0.93806 0.98366 0.93824 0.98397 0.93782
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.91 9.91 71.98 0.71 -0.20 16
2 C -0.12 -0.97 5.92 30.59 0.18 -0.79 16
3 C -0.05 -0.40 5.77 29.85 0.17 -0.22 16
4 C 0.04 0.62 6.48 41.40 0.27 0.88 16
5 C -0.20 -4.65 10.73 22.41 0.24 -4.41 16
6 C -0.04 -1.06 7.13 42.46 0.30 -0.75 16
7 C 0.60 19.81 7.79 86.75 0.68 20.49 16
8 O -0.57 -21.65 16.59 -3.94 -0.07 -21.71 16
9 N -0.70 -21.50 4.47 -445.52 -1.99 -23.50 16
10 C 0.15 4.62 2.16 44.99 0.10 4.71 16
11 H 0.07 2.38 7.58 -2.39 -0.02 2.36 16
12 C -0.15 -3.69 9.14 71.98 0.66 -3.03 16
13 C -0.09 -3.13 1.97 -10.72 -0.02 -3.15 16
14 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16
15 C -0.10 -3.01 4.86 30.62 0.15 -2.86 16
16 C -0.13 -4.57 6.06 30.53 0.19 -4.39 16
17 C 0.15 7.37 4.66 86.22 0.40 7.77 16
18 N -0.62 -31.93 2.86 -699.93 -2.00 -33.93 16
19 C -0.35 -20.27 9.49 84.03 0.80 -19.47 16
20 H 0.05 2.82 7.94 -2.91 -0.02 2.80 16
21 C -0.08 -4.57 4.69 84.86 0.40 -4.17 16
22 N -0.94 -58.95 12.40 21.65 0.27 -58.68 16
23 Si 1.12 51.79 29.99 68.60 2.06 53.84 16
24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16
25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16
26 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16
27 C 0.16 6.94 5.56 86.36 0.48 7.42 16
28 N -0.27 -6.86 11.92 -48.17 -0.57 -7.43 16
29 N -0.36 -6.19 6.83 -47.93 -0.33 -6.52 16
30 H 0.46 4.25 8.96 -220.00 -1.97 2.28 16
31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16
32 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16
33 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16
34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16
35 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16
36 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16
37 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16
38 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16
39 H 0.41 12.09 8.14 -92.71 -0.75 11.34 16
40 H 0.09 1.80 6.41 -2.39 -0.02 1.79 16
41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16
42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16
43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16
44 H 0.09 2.25 6.37 -2.39 -0.02 2.24 16
45 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16
46 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16
47 H 0.04 2.40 6.30 -2.39 -0.02 2.39 16
48 H 0.00 -0.08 7.87 -2.39 -0.02 -0.10 16
49 H 0.25 16.20 6.71 -92.70 -0.62 15.58 16
50 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16
51 H 0.04 1.97 7.44 -2.39 -0.02 1.96 16
Total: -1.00 -76.47 404.45 1.42 -75.05
By element:
Atomic # 1 Polarization: 26.71 SS G_CDS: -1.65 Total: 25.06 kcal
Atomic # 6 Polarization: -7.88 SS G_CDS: 5.70 Total: -2.18 kcal
Atomic # 7 Polarization: -125.43 SS G_CDS: -4.62 Total: -130.06 kcal
Atomic # 8 Polarization: -21.65 SS G_CDS: -0.07 Total: -21.71 kcal
Atomic # 14 Polarization: 51.79 SS G_CDS: 2.06 Total: 53.84 kcal
Total: -76.47 1.42 -75.05 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025501181.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.540 kcal
(2) G-P(sol) polarization free energy of solvation -76.465 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.075 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.046 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.494 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds